Ggra9361.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9361.t1
Unique NameGgra9361.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length556
Homology
BLAST of Ggra9361.t1 vs. uniprot
Match: A0A2V3IV81 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IV81_9FLOR)

HSP 1 Score: 598 bits (1541), Expect = 1.410e-206
Identity = 301/534 (56.37%), Postives = 383/534 (71.72%), Query Frame = 0
Query:    1 MDSEKTTECSELSKFSPPIALDSSQVSGWKSPNRLSLFKSRTLPDNGGVAFAGGRISVLKWHPQVEGILATAAHRSDQPVHEVLESYTGTGHIQIWCIGKGKAVCLGVVPHNGDCTWDLKWRPTIGDPESGNGWNGTFAAALGDGTILICCFKGISRHSNGCNTESRRIPVLPCSQTILRANTDGSLQRPVRVVQWSLDGKRLLVGCVTGSLEVYESSPSESVWPKWSVPAQESIVTDIRWVNRYLFCCLGTSCALRLRDIRDPIATIEQNAEGLAGSLSMCMAEPNVAVVGGDTGHLRVVRLCGTDNFKAKDPVRRVYVQGNSFRTMQSVSAPHNGLSRSLVFTGGCEGILHEIAFPRPLWLGYEQSSISKTKIGQLLRWRVHDSSPNKSDNHLTLLLTIGTSGTSTIDSAPKSAQGNERQAVDETQNSVQRVQKSTTQQRTRKISGPSGDDKPLFGTAYHQSVTITRVDVSIPDRRVAVGIDGGIITWLQLNHKLFESSLVR-------TKPPSTKKGKRSSSKTME--VKT 525
            MDSE+T++CSELSK+S P+ L    +   K   RL LF+S  LP  GG+AF GGR+SVLKWHP   GILATAAH+S+Q  HEVL +Y+G  HIQIW +    A CLGV+PHNGDCTWDLKWRP     E  N W+GTFAAALGDG ILI  F+ +++ S+G ++ + ++ VLPCS+T+LR +    L+RPVRV++WSLDG RLLVG V G +EVYE+S   S+WPKW++PAQESIV+D++W+N  LFC LG SC LRLRDIRDP+ATIEQNAEGLAGSLSM MAEPNVAVVGGDTG+LRVVRL GTDNF AK PVRRVYVQG+SFRTMQS+S P    SR++++TGGCEGI+HEI+FPRPLW   +Q +IS+T++GQLLRW V        +    + LT+G S     D        ++R+ VD      +  +  +  ++  K+ GP G DKPLFG +YHQ++ +TRVDVSI D  +AVGIDGGI+TWL L+H+  +SSL         TKP ++ K +  + KT +  VKT
Sbjct:    1 MDSEQTSQCSELSKYSHPLLLSHRDLPKEKVLGRLKLFESLPLPGKGGIAFTGGRVSVLKWHPTARGILATAAHKSEQLFHEVLRTYSGPAHIQIWRMSGTSAACLGVIPHNGDCTWDLKWRPGRVKAEPANRWSGTFAAALGDGCILISTFENVTQTSSGYDSLTGKVRVLPCSKTLLRVHKKPFLRRPVRVLEWSLDGTRLLVGSVNGFVEVYEASSDSSIWPKWTIPAQESIVSDMKWLNPSLFCTLGISCVLRLRDIRDPVATIEQNAEGLAGSLSMSMAEPNVAVVGGDTGYLRVVRLRGTDNFNAKHPVRRVYVQGSSFRTMQSISVPSPKGSRTILYTGGCEGIVHEISFPRPLWPDQDQCTISRTRVGQLLRWCVEKCPAKAKEKGDIMHLTLGGSFEDAQDR--NKGTSSDREGVD-----PRNGRSHSGFRKKTKVVGPHGTDKPLFGDSYHQAIVVTRVDVSIQDNMIAVGIDGGIVTWLPLDHESIDSSLAEDMDSEWVTKPSASSKKRMKTKKTRKPNVKT 527          
BLAST of Ggra9361.t1 vs. uniprot
Match: R7QHN9 (ANAPC4_WD40 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHN9_CHOCR)

HSP 1 Score: 399 bits (1026), Expect = 1.330e-122
Identity = 212/509 (41.65%), Postives = 291/509 (57.17%), Query Frame = 0
Query:    1 MDSEKTTECSELSKFSPPIALDSSQVSGWKSPNRLSLFKSRTLPDNGG-VAFAGGRISVLKWHPQVEGILATAAHRSDQPVHEVLESYTGTGHIQIWCIGKGKAVCLGVVPHNGDCTWDLKWRPTIGDPESGNGWNGTFAAALGDGTILICCFKGISRHSNGCNTESRRIPVLPCSQTILRANTDGSLQRPVRVVQWSLDGKRLLVGCVTGSLEVYESSPSESVWPKWSVPAQESIVTDIRWVNRYLFCCLGTSCALRLRDIRDPIATIEQNAEGLAGSLSMCMAEPNVAVVGGDTGHLRVVRLCGTDNFKAKDPVRRVYVQGNSFRTMQSV---SAPHNGLSRSLVFTGGCEGILHEIAFPRPLWLGYEQSSISKTKIGQLLRWRVHDSSPNKSDNHLTLLLTIGTSGTS---------TIDSAPKSAQGNERQAVDETQNSVQRVQKSTTQQRTRKISGPSG--DDKPLFGTAYHQSVTITRVDVSIPDRRVAVGIDGGIITWLQLN 494
            M+      C EL  FS  + +  +         RLSLF+SR LP   G +A+ GG +S L +HP  +GI A AAHRSDQP H +L+ Y G+GHIQ+W   +    CLG+V HNG+C WDLKWRP     +   GW GT AAALGDGT+L+      ++ S+G   E   I  L  + T+LR N   + + PVRVV+WS +G  L+VGC  GS+EVY+++  +  WP+WS+P  ES+V D+RW++    C LG SC LRLRDIRDP++T+EQN EGL+GS+SM   EPNVA++GGD G+LRVVRL G D    +  V+RV +Q  SFR M SV       +  S++L +TGG +G+LHE  FPRP+W    +  I KT++G+ LRW          +   TL L +  S  S          +D+      G     VD           S   +R+R + G  G  D    FG  Y +   +TR  +S+P   +AVGI GG++TW+ L+
Sbjct:    6 MEKNSKAVCPELRAFSDCVDVAEAGHEQLHKHGRLSLFESRVLPSGRGRIAYVGGSVSALSFHPWAKGICAVAAHRSDQPTHRILKCYAGSGHIQLWRFAENDTRCLGLVEHNGECVWDLKWRPEQSQRDGSTGWEGTLAAALGDGTVLVSKIDSFTKVSHG--AEKDAIKTLYPTSTLLRVNKSIASRSPVRVVEWSKEGNLLVVGCADGSIEVYDATSVDRTWPRWSIPGHESVVVDLRWLSETHLCSLGLSCVLRLRDIRDPVSTLEQNMEGLSGSMSMDAPEPNVAIIGGDYGYLRVVRLSGVDGMMPQRSVKRVRLQSGSFRDMCSVPISGQEADSCSQTLFYTGGADGMLHECKFPRPIWTSANECEIGKTQVGERLRWTQTTEIKEGGEEIRTLRLQLRNSLASGGQELSHGSLLDTENGGLGGT---LVDTLLQETSTSSASRKPKRSRTV-GREGLADAYSRFGAQYKELAGVTRTSLSVPSDILAVGISGGLVTWVPLS 508          
The following BLAST results are available for this feature:
BLAST of Ggra9361.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IV811.410e-20656.37Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QHN91.330e-12241.65ANAPC4_WD40 domain-containing protein n=1 Tax=Chon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 26..363
e-value: 2.4E-13
score: 51.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 504..555
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..456
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 409..446
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 515..547
NoneNo IPR availablePANTHERPTHR15052RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNITcoord: 44..505
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 55..330

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:91645..93312 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9361.t1Ggra9361.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 91645..93312 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9361.t1 ID=Ggra9361.t1|Name=Ggra9361.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=556bp
MDSEKTTECSELSKFSPPIALDSSQVSGWKSPNRLSLFKSRTLPDNGGVA
FAGGRISVLKWHPQVEGILATAAHRSDQPVHEVLESYTGTGHIQIWCIGK
GKAVCLGVVPHNGDCTWDLKWRPTIGDPESGNGWNGTFAAALGDGTILIC
CFKGISRHSNGCNTESRRIPVLPCSQTILRANTDGSLQRPVRVVQWSLDG
KRLLVGCVTGSLEVYESSPSESVWPKWSVPAQESIVTDIRWVNRYLFCCL
GTSCALRLRDIRDPIATIEQNAEGLAGSLSMCMAEPNVAVVGGDTGHLRV
VRLCGTDNFKAKDPVRRVYVQGNSFRTMQSVSAPHNGLSRSLVFTGGCEG
ILHEIAFPRPLWLGYEQSSISKTKIGQLLRWRVHDSSPNKSDNHLTLLLT
IGTSGTSTIDSAPKSAQGNERQAVDETQNSVQRVQKSTTQQRTRKISGPS
GDDKPLFGTAYHQSVTITRVDVSIPDRRVAVGIDGGIITWLQLNHKLFES
SLVRTKPPSTKKGKRSSSKTMEVKTEDNTVPNELHGEADHEYNDGPLADE
NAPES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf