Ggra9377.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9377.t1
Unique Name	Ggra9377.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	343

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:134212..135240 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ33933
PFAMs	WD40
Max annot lvl	35493\|Streptophyta
Evalue	1.88e-06
EggNOG OGs	2CY5Q@1\|root,2S27C@2759\|Eukaryota,37UCR@33090\|Viridiplantae,3GNZC@35493\|Streptophyta

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9377	Ggra9377	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 134212..135240 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9377.t1.start1	Ggra9377.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 134212..134214 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9377.t1.CDS1	Ggra9377.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 134212..135240 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9377.t1.exon1	Ggra9377.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 134212..135240 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9377.t1.stop1	Ggra9377.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 135238..135240 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9377.t1	Ggra9377.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 134212..135240 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:134212..135240+
coding sequence from alignment at tig00000883_pilon:134212..135240+

mRNA sequence

>Ggra9377.t1 ID=Ggra9377.t1|Name=Ggra9377.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MKVRVEFDIDAAEAPRVTPLLHAFQHLVDSLNRVHVSPPQASTASPSPRR
ASDAPASPSQNASPSQSASPPQQRAPQAATSAASEPRVSEPKPSPSPSPS
HEAASPSTTLPRARPHRSNGAARARTKKRQPALDTCERVFDAVAQARVSV
KRAAALLRQMLHRTHAAVLDDDIIAAAATELLDPTKVCNHPSRAANIVLT
VAAMGQPILHTFRTRFMADVVEQLSKPRHIRCDRAQFLGYSEGLATMVNA
RIIPADNAIEMVQNLLRTGQSCTAAVSTLCRIADTCEQSIDALVEHRHML
EGVKSLLANVATIPEYAYDIQYLNGVTGWAIPLSPTAQAKQL*

spliced messenger RNA

>Ggra9377.t1 ID=Ggra9377.t1|Name=Ggra9377.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000883_pilon:134212..135240+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGTGCGCGTGGAGTTTGACATCGACGCCGCGGAGGCGCCGCGCGT
CACGCCGTTGCTGCACGCCTTCCAGCACCTTGTGGACTCGCTCAATCGGG
TGCATGTCTCCCCGCCACAGGCTTCTACCGCTTCGCCCTCGCCGCGTCGC
GCTTCCGACGCGCCCGCTTCTCCCTCGCAGAATGCGTCGCCCTCGCAGAG
TGCGTCGCCGCCGCAGCAGCGCGCTCCCCAAGCAGCCACTTCGGCCGCTT
CTGAGCCCCGGGTGAGCGAGCCCAAgccgtcgccgtcgccgtcgccgtcg
cACGAAGCCGCCTCGCCCTCCACCACGCTTCCTCGCGCGCGGCCACACAG
GTCCAATGGCGCCGCTCGTGCACGCACCAAGAAGAGACAGCCGGCGCTTG
ATACTTGTGAGCGTGTGTTCGACGCCGTCGCGCAGGCGCGCGTGTCGGTC
AAACGCGCCGCGGCGCTTTTGAGACAGATGTTGCATCGCACTCATGCTGC
TGTGCTTGATGATGATATTATTGCCGCTGCCGCTACCGAGTTGCTGGACC
CGACAAAGGTATGTAATCATCCTTCGCGAGCGGCCAATATCGTGTTGACC
GTTGCTGCTATGGGACAGCCTATCCTGCACACATTTCGCACGCGTTTCAT
GGCAGATGTTGTGGAGCAGCTAAGTAAACCACGTCACATCCGTTGCGATA
GAGCCCAGTTTTTGGGTTATTCAGAAGGATTGGCCACCATGGTCAACGCT
CGCATCATCCCTGCGGATAATGCTATTGAGATGGTTCAAAATCTGTTGCG
CACCGGACAGTCGTGCACCGCCGCTGTTTCCACGCTTTGTAGAATAGCTG
ACACCTGTGAACAGTCGATTGATGCATTGGTGGAACATCGCCATATGCTG
GAAGGCGTGAAAAGCTTGCTTGCTAATGTGGCTACTATACCTGAGTATGC
GTATGATATTCAGTACCTTAACGGAGTTACTGGTTGGGCTATACCGCTTT
CCCCAACTGCACAAGCTAAACAACTCTAA

protein sequence of Ggra9377.t1

>Ggra9377.t1 ID=Ggra9377.t1|Name=Ggra9377.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MKVRVEFDIDAAEAPRVTPLLHAFQHLVDSLNRVHVSPPQASTASPSPRR
ASDAPASPSQNASPSQSASPPQQRAPQAATSAASEPRVSEPKPSPSPSPS
HEAASPSTTLPRARPHRSNGAARARTKKRQPALDTCERVFDAVAQARVSV
KRAAALLRQMLHRTHAAVLDDDIIAAAATELLDPTKVCNHPSRAANIVLT
VAAMGQPILHTFRTRFMADVVEQLSKPRHIRCDRAQFLGYSEGLATMVNA
RIIPADNAIEMVQNLLRTGQSCTAAVSTLCRIADTCEQSIDALVEHRHML
EGVKSLLANVATIPEYAYDIQYLNGVTGWAIPLSPTAQAKQL*

mRNA from alignment at tig00000883_pilon:134212..135240+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9377.t1 ID=Ggra9377.t1|Name=Ggra9377.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000883_pilon:134212..135240+ (Gracilaria gracilis GNS1m male)
ATGAAGGTGCGCGTGGAGTTTGACATCGACGCCGCGGAGGCGCCGCGCGT
CACGCCGTTGCTGCACGCCTTCCAGCACCTTGTGGACTCGCTCAATCGGG
TGCATGTCTCCCCGCCACAGGCTTCTACCGCTTCGCCCTCGCCGCGTCGC
GCTTCCGACGCGCCCGCTTCTCCCTCGCAGAATGCGTCGCCCTCGCAGAG
TGCGTCGCCGCCGCAGCAGCGCGCTCCCCAAGCAGCCACTTCGGCCGCTT
CTGAGCCCCGGGTGAGCGAGCCCAAgccgtcgccgtcgccgtcgccgtcg
cACGAAGCCGCCTCGCCCTCCACCACGCTTCCTCGCGCGCGGCCACACAG
GTCCAATGGCGCCGCTCGTGCACGCACCAAGAAGAGACAGCCGGCGCTTG
ATACTTGTGAGCGTGTGTTCGACGCCGTCGCGCAGGCGCGCGTGTCGGTC
AAACGCGCCGCGGCGCTTTTGAGACAGATGTTGCATCGCACTCATGCTGC
TGTGCTTGATGATGATATTATTGCCGCTGCCGCTACCGAGTTGCTGGACC
CGACAAAGGTATGTAATCATCCTTCGCGAGCGGCCAATATCGTGTTGACC
GTTGCTGCTATGGGACAGCCTATCCTGCACACATTTCGCACGCGTTTCAT
GGCAGATGTTGTGGAGCAGCTAAGTAAACCACGTCACATCCGTTGCGATA
GAGCCCAGTTTTTGGGTTATTCAGAAGGATTGGCCACCATGGTCAACGCT
CGCATCATCCCTGCGGATAATGCTATTGAGATGGTTCAAAATCTGTTGCG
CACCGGACAGTCGTGCACCGCCGCTGTTTCCACGCTTTGTAGAATAGCTG
ACACCTGTGAACAGTCGATTGATGCATTGGTGGAACATCGCCATATGCTG
GAAGGCGTGAAAAGCTTGCTTGCTAATGTGGCTACTATACCTGAGTATGC
GTATGATATTCAGTACCTTAACGGAGTTACTGGTTGGGCTATACCGCTTT
CCCCAACTGCACAAGCTAAACAACTCTAA

Coding sequence (CDS) from alignment at tig00000883_pilon:134212..135240+

>Ggra9377.t1 ID=Ggra9377.t1|Name=Ggra9377.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000883_pilon:134212..135240+ (Gracilaria gracilis GNS1m male)
ATGAAGGTGCGCGTGGAGTTTGACATCGACGCCGCGGAGGCGCCGCGCGT
CACGCCGTTGCTGCACGCCTTCCAGCACCTTGTGGACTCGCTCAATCGGG
TGCATGTCTCCCCGCCACAGGCTTCTACCGCTTCGCCCTCGCCGCGTCGC
GCTTCCGACGCGCCCGCTTCTCCCTCGCAGAATGCGTCGCCCTCGCAGAG
TGCGTCGCCGCCGCAGCAGCGCGCTCCCCAAGCAGCCACTTCGGCCGCTT
CTGAGCCCCGGGTGAGCGAGCCCAAgccgtcgccgtcgccgtcgccgtcg
cACGAAGCCGCCTCGCCCTCCACCACGCTTCCTCGCGCGCGGCCACACAG
GTCCAATGGCGCCGCTCGTGCACGCACCAAGAAGAGACAGCCGGCGCTTG
ATACTTGTGAGCGTGTGTTCGACGCCGTCGCGCAGGCGCGCGTGTCGGTC
AAACGCGCCGCGGCGCTTTTGAGACAGATGTTGCATCGCACTCATGCTGC
TGTGCTTGATGATGATATTATTGCCGCTGCCGCTACCGAGTTGCTGGACC
CGACAAAGGTATGTAATCATCCTTCGCGAGCGGCCAATATCGTGTTGACC
GTTGCTGCTATGGGACAGCCTATCCTGCACACATTTCGCACGCGTTTCAT
GGCAGATGTTGTGGAGCAGCTAAGTAAACCACGTCACATCCGTTGCGATA
GAGCCCAGTTTTTGGGTTATTCAGAAGGATTGGCCACCATGGTCAACGCT
CGCATCATCCCTGCGGATAATGCTATTGAGATGGTTCAAAATCTGTTGCG
CACCGGACAGTCGTGCACCGCCGCTGTTTCCACGCTTTGTAGAATAGCTG
ACACCTGTGAACAGTCGATTGATGCATTGGTGGAACATCGCCATATGCTG
GAAGGCGTGAAAAGCTTGCTTGCTAATGTGGCTACTATACCTGAGTATGC
GTATGATATTCAGTACCTTAACGGAGTTACTGGTTGGGCTATACCGCTTT
CCCCAACTGCACAAGCTAAACAACTCTAA