Ggra9385.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9385.t1
Unique NameGgra9385.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length269
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:281504..282310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3827.XP_004499207.1
PFAMsCLTH
Max annot lvl35493|Streptophyta
Evalue8.95e-21
EggNOG OGsKOG2659@1|root,KOG2659@2759|Eukaryota,37M57@33090|Viridiplantae,3GFIM@35493|Streptophyta,4JJ1H@91835|fabids
DescriptionGlucose-induced degradation protein 8 homolog
COG categoryZ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9385Ggra9385Gracilaria gracilis GNS1m malegenetig00000883_pilon 281504..282310 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9385.t1.start1Ggra9385.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 281504..281506 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9385.t1.CDS1Ggra9385.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 281504..282310 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9385.t1.exon1Ggra9385.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 281504..282310 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9385.t1.stop1Ggra9385.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 282308..282310 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9385.t1Ggra9385.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 281504..282310 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9385.t1 ID=Ggra9385.t1|Name=Ggra9385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=269bp
MEVEREDGEKKRVSDARQQQQQQQQSWSDSIENVNLSDAVVRKHVMNYLL
HNFYEQTASAFLREQVQRHETQLKHTLSNMMSELRQRRKMTEKLRQGNVL
ESIQQADQLIQNTRKTTIQKQYPMLYARLLCQHFTELIRDKQTVRALNFA
QTDIVPVGKRHKDAMNLLRRYFALLAYKQPELSPLFELVDVRQRELLAEE
LNGRVCRLTRSETHLNDVHSDLERTLRQLTLVMRRVGGEKKDAADDDWCV
AHVFEERNKSDSDVRNDK*
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spliced messenger RNA

>Ggra9385.t1 ID=Ggra9385.t1|Name=Ggra9385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000883_pilon:281504..282310+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTGGAGCGAGAAGATGGGGAGAAGAAGCGTGTGTCGGACGCGCG
GcagcagcagcaacaacaacaacaaTCGTGGAGTGATAGCATTGAGAACG
TCAACTTGTCGGACGCGGTGGTTCGAAAACACGTGATGAATTACTTGTTA
CACAACTTTTATGAACAGACGGCCAGCGCCTTTCTGCGCGAGCAGGTGCA
ACGACATGAGACGCAGCTCAAACACACGCTCAGCAACATGATGAGTGAAC
TGAGACAGCGACGAAAGATGACCGAGAAGCTGCGACAAGGCAACGTTTTG
GAATCCATTCAGCAAGCAGACCAATTGATACAAAATACAAGAAAGACAAC
CATACAGAAACAATACCCCATGTTATACGCGCGGCTGCTGTGTCAACATT
TCACCGAGTTAATCCGCGACAAACAGACGGTGCGCGCGCTCAACTTTGCG
CAGACGGATATCGTGCCGGTTGGAAAACGACATAAGGACGCGATGAACCT
GCTAAGAAGGTACTTTGCGTTGCTGGCGTACAAACAACCGGAGCTGAGTC
CGTTGTTCGAGCTGGTGGATGTGCGACAACGCGAGTTGTTGGCGGAGGAG
TTGAACGGAAGAGTATGTCGATTGACTCGCAGTGAAACGCACTTGAACGA
CGTTCACAGTGACCTGGAGCGTACACTGAGGCAATTAACGCTGGTGATGA
GACGAGTGGGCGGCGAGAAGAAGGACGCAGCTGACGATGATTGGTGCGTA
GCGCACGTTTTTGAAGAGCGCAACAAGAGTGACAGTGATGTGCGGAACGA
CAAATGA
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protein sequence of Ggra9385.t1

>Ggra9385.t1 ID=Ggra9385.t1|Name=Ggra9385.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=269bp
MEVEREDGEKKRVSDARQQQQQQQQSWSDSIENVNLSDAVVRKHVMNYLL
HNFYEQTASAFLREQVQRHETQLKHTLSNMMSELRQRRKMTEKLRQGNVL
ESIQQADQLIQNTRKTTIQKQYPMLYARLLCQHFTELIRDKQTVRALNFA
QTDIVPVGKRHKDAMNLLRRYFALLAYKQPELSPLFELVDVRQRELLAEE
LNGRVCRLTRSETHLNDVHSDLERTLRQLTLVMRRVGGEKKDAADDDWCV
AHVFEERNKSDSDVRNDK*
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mRNA from alignment at tig00000883_pilon:281504..282310+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9385.t1 ID=Ggra9385.t1|Name=Ggra9385.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=807bp|location=Sequence derived from alignment at tig00000883_pilon:281504..282310+ (Gracilaria gracilis GNS1m male)
ATGGAGGTGGAGCGAGAAGATGGGGAGAAGAAGCGTGTGTCGGACGCGCG
GcagcagcagcaacaacaacaacaaTCGTGGAGTGATAGCATTGAGAACG
TCAACTTGTCGGACGCGGTGGTTCGAAAACACGTGATGAATTACTTGTTA
CACAACTTTTATGAACAGACGGCCAGCGCCTTTCTGCGCGAGCAGGTGCA
ACGACATGAGACGCAGCTCAAACACACGCTCAGCAACATGATGAGTGAAC
TGAGACAGCGACGAAAGATGACCGAGAAGCTGCGACAAGGCAACGTTTTG
GAATCCATTCAGCAAGCAGACCAATTGATACAAAATACAAGAAAGACAAC
CATACAGAAACAATACCCCATGTTATACGCGCGGCTGCTGTGTCAACATT
TCACCGAGTTAATCCGCGACAAACAGACGGTGCGCGCGCTCAACTTTGCG
CAGACGGATATCGTGCCGGTTGGAAAACGACATAAGGACGCGATGAACCT
GCTAAGAAGGTACTTTGCGTTGCTGGCGTACAAACAACCGGAGCTGAGTC
CGTTGTTCGAGCTGGTGGATGTGCGACAACGCGAGTTGTTGGCGGAGGAG
TTGAACGGAAGAGTATGTCGATTGACTCGCAGTGAAACGCACTTGAACGA
CGTTCACAGTGACCTGGAGCGTACACTGAGGCAATTAACGCTGGTGATGA
GACGAGTGGGCGGCGAGAAGAAGGACGCAGCTGACGATGATTGGTGCGTA
GCGCACGTTTTTGAAGAGCGCAACAAGAGTGACAGTGATGTGCGGAACGA
CAAATGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:281504..282310+

>Ggra9385.t1 ID=Ggra9385.t1|Name=Ggra9385.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=807bp|location=Sequence derived from alignment at tig00000883_pilon:281504..282310+ (Gracilaria gracilis GNS1m male)
ATGGAGGTGGAGCGAGAAGATGGGGAGAAGAAGCGTGTGTCGGACGCGCG
GcagcagcagcaacaacaacaacaaTCGTGGAGTGATAGCATTGAGAACG
TCAACTTGTCGGACGCGGTGGTTCGAAAACACGTGATGAATTACTTGTTA
CACAACTTTTATGAACAGACGGCCAGCGCCTTTCTGCGCGAGCAGGTGCA
ACGACATGAGACGCAGCTCAAACACACGCTCAGCAACATGATGAGTGAAC
TGAGACAGCGACGAAAGATGACCGAGAAGCTGCGACAAGGCAACGTTTTG
GAATCCATTCAGCAAGCAGACCAATTGATACAAAATACAAGAAAGACAAC
CATACAGAAACAATACCCCATGTTATACGCGCGGCTGCTGTGTCAACATT
TCACCGAGTTAATCCGCGACAAACAGACGGTGCGCGCGCTCAACTTTGCG
CAGACGGATATCGTGCCGGTTGGAAAACGACATAAGGACGCGATGAACCT
GCTAAGAAGGTACTTTGCGTTGCTGGCGTACAAACAACCGGAGCTGAGTC
CGTTGTTCGAGCTGGTGGATGTGCGACAACGCGAGTTGTTGGCGGAGGAG
TTGAACGGAAGAGTATGTCGATTGACTCGCAGTGAAACGCACTTGAACGA
CGTTCACAGTGACCTGGAGCGTACACTGAGGCAATTAACGCTGGTGATGA
GACGAGTGGGCGGCGAGAAGAAGGACGCAGCTGACGATGATTGGTGCGTA
GCGCACGTTTTTGAAGAGCGCAACAAGAGTGACAGTGATGTGCGGAACGA
CAAATGA
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