Ggra9350.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9350.t1
Unique NameGgra9350.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Homology
The following BLAST results are available for this feature:
BLAST of Ggra9350.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 154..177
e-value: 0.0019
score: 27.5
coord: 183..208
e-value: 0.0055
score: 25.9
coord: 125..148
e-value: 0.27
score: 20.3
coord: 214..239
e-value: 0.059
score: 22.5
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 183..208
e-value: 0.0058
score: 17.0
coord: 126..148
e-value: 0.0021
score: 18.4
coord: 154..177
e-value: 6.9E-4
score: 19.9
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 216..239
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 156..177
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 127..148
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 185..208
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 183..213
score: 11.884092
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 214..244
score: 10.283794
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 125..153
score: 11.426865
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 154..182
score: 10.990419
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 209..249
e-value: 2.2E-8
score: 35.6
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 182..208
e-value: 4.0E-6
score: 28.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 105..181
e-value: 9.1E-14
score: 53.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..71
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 27..51
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..123
NoneNo IPR availablePANTHERPTHR24388ZINC FINGER PROTEINcoord: 125..236
NoneNo IPR availablePANTHERPTHR24388:SF77CHORION TRANSCRIPTION FACTOR CF2-RELATEDcoord: 125..236
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 124..175
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 212..239
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 163..217

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:54418..55472 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1Ggra9350.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 54418..55472 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9350.t1 ID=Ggra9350.t1|Name=Ggra9350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MDLSQIVHGPLPKSDNSHRRARYERQNSNRNFPAPQRTSRAAGSSGNGAH
NFETPVLRPGHSLLPVPAGASPDLQLGGGNASVVGGASSSAIGGGGGAPI
SALLRNDPRPTTQSTPRTRPDTKRKKCSICGKSFYSSTHVEIHENTVHRG
IKNHQCQICPARFGQSGTLTRHLRTVHEKRRDHECKEPFCGKRFSSAWSL
KVHTQNVHEKLRPYVCRAPGCSRSFGNLWNRRKHERNIHGIDDPTPRQPR
R*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf