Ggra9350.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9350.t1
Unique NameGgra9350.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:54418..55472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9350Ggra9350Gracilaria gracilis GNS1m malegenetig00000883_pilon 54418..55472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1Ggra9350.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 54418..55472 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1.stop1Ggra9350.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 54418..54420 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1.CDS1Ggra9350.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 54418..54561 -
Ggra9350.t1.CDS2Ggra9350.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 54659..54832 -
Ggra9350.t1.CDS3Ggra9350.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000883_pilon 54923..55201 -
Ggra9350.t1.CDS4Ggra9350.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000883_pilon 55314..55472 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1.exon1Ggra9350.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 54418..54561 -
Ggra9350.t1.exon2Ggra9350.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 54659..54832 -
Ggra9350.t1.exon3Ggra9350.t1.exon3Gracilaria gracilis GNS1m maleexontig00000883_pilon 54923..55201 -
Ggra9350.t1.exon4Ggra9350.t1.exon4Gracilaria gracilis GNS1m maleexontig00000883_pilon 55314..55472 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1.intron1Ggra9350.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 54562..54658 -
Ggra9350.t1.intron2Ggra9350.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000883_pilon 54833..54922 -
Ggra9350.t1.intron3Ggra9350.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000883_pilon 55202..55313 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9350.t1.start1Ggra9350.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 55470..55472 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9350.t1 ID=Ggra9350.t1|Name=Ggra9350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MDLSQIVHGPLPKSDNSHRRARYERQNSNRNFPAPQRTSRAAGSSGNGAH
NFETPVLRPGHSLLPVPAGASPDLQLGGGNASVVGGASSSAIGGGGGAPI
SALLRNDPRPTTQSTPRTRPDTKRKKCSICGKSFYSSTHVEIHENTVHRG
IKNHQCQICPARFGQSGTLTRHLRTVHEKRRDHECKEPFCGKRFSSAWSL
KVHTQNVHEKLRPYVCRAPGCSRSFGNLWNRRKHERNIHGIDDPTPRQPR
R*
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spliced messenger RNA

>Ggra9350.t1 ID=Ggra9350.t1|Name=Ggra9350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000883_pilon:54418..55472- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTGTCTCAAATCGTTCACGGACCACTTCCCAAGTCGGACAATTC
GCATCGTCGAGCCCGCTACGAGCGACAAAACAGCAACCGAAACTTCCCAG
CACCGCAACGTACCTCACGCGCCGCAGGTAGTAGCGGAAATGGCGCACAT
AACTTCGAGACGCCCGTGTTAAGACCGGGGCATTCTCTTCTTCCAGTGCC
CGCGGGTGCAAGCCCAGACCTTCAGCTCGGCGGCGGCAACGCGAGCGTGG
TTGGCGGTGCAAGTAGTAGCGCGATTGGCGGCGGTGGCGGAGCTCCGATA
TCGGCTTTGCTTCGCAACGACCCTCGGCCGACGACTCAGTCGACCCCTCG
CACTCGCCCTGACACGAAACGGAAGAAGTGTTCCATCTGCGGCAAGTCGT
TCTACTCCAGTACGCACGTCGAAATCCATGAGAACACGGTTCATCGCGGT
ATTAAGAACCATCAATGCCAAATCTGCCCGGCGCGATTTGGACAGAGCGG
AACGCTAACGCGTCATCTACGCACGGTGCACGAAAAGCGACGCGATCACG
AATGCAAGGAGCCGTTTTGCGGCAAGCGTTTCAGCTCCGCATGGAGTCTC
AAAGTTCACACCCAAAACGTGCACGAAAAACTTCGACCTTACGTGTGCCG
AGCCCCGGGGTGTTCACGAAGCTTTGGCAACTTGTGGAACCGCCGCAAAC
ACGAACGTAATATCCACGGCATCGACGATCCGACGCCGCGCCAGCCGCGC
CGCTGA
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protein sequence of Ggra9350.t1

>Ggra9350.t1 ID=Ggra9350.t1|Name=Ggra9350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MDLSQIVHGPLPKSDNSHRRARYERQNSNRNFPAPQRTSRAAGSSGNGAH
NFETPVLRPGHSLLPVPAGASPDLQLGGGNASVVGGASSSAIGGGGGAPI
SALLRNDPRPTTQSTPRTRPDTKRKKCSICGKSFYSSTHVEIHENTVHRG
IKNHQCQICPARFGQSGTLTRHLRTVHEKRRDHECKEPFCGKRFSSAWSL
KVHTQNVHEKLRPYVCRAPGCSRSFGNLWNRRKHERNIHGIDDPTPRQPR
R*
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mRNA from alignment at tig00000883_pilon:54418..55472-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9350.t1 ID=Ggra9350.t1|Name=Ggra9350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1055bp|location=Sequence derived from alignment at tig00000883_pilon:54418..55472- (Gracilaria gracilis GNS1m male)
ATGGACTTGTCTCAAATCGTTCACGGACCACTTCCCAAGTCGGACAATTC
GCATCGTCGAGCCCGCTACGAGCGACAAAACAGCAACCGAAACTTCCCAG
CACCGCAACGTACCTCACGCGCCGCAGGTAGTAGCGGAAATGGCGCACAT
AACTTCGAGGTACGTTTTTGAGTTTCTGCACACGTCTCTGCACGAGAACG
ATGCGAAAGATTGTACGACCACTTGAACCTGAAACTCTGACCGTGGGCAT
TGTTGCGTTGCTTCCATATAGACGCCCGTGTTAAGACCGGGGCATTCTCT
TCTTCCAGTGCCCGCGGGTGCAAGCCCAGACCTTCAGCTCGGCGGCGGCA
ACGCGAGCGTGGTTGGCGGTGCAAGTAGTAGCGCGATTGGCGGCGGTGGC
GGAGCTCCGATATCGGCTTTGCTTCGCAACGACCCTCGGCCGACGACTCA
GTCGACCCCTCGCACTCGCCCTGACACGAAACGGAAGAAGTGTTCCATCT
GCGGCAAGTCGTTCTACTCCAGTACGCACGTCGAAATCCATGAGAACACG
GTACGTTGTGTGACACGATTCACTGTTATTGTGTTTCCATGCTTGTGTTT
CATCTGACTGACTTGTTTCGACTTTTGGACTTGGGCGCAGGTTCATCGCG
GTATTAAGAACCATCAATGCCAAATCTGCCCGGCGCGATTTGGACAGAGC
GGAACGCTAACGCGTCATCTACGCACGGTGCACGAAAAGCGACGCGATCA
CGAATGCAAGGAGCCGTTTTGCGGCAAGCGTTTCAGCTCCGCATGGAGTC
TCAAAGTTCACACCGTAAGTTCAGATGCTTCAGCCTCCTCTTGCTCTCCA
TTCACAGACGGGCGGCAGTTTGTGCGAACATACAACTAACATTATTGTTC
CCCATCTGTAGCAAAACGTGCACGAAAAACTTCGACCTTACGTGTGCCGA
GCCCCGGGGTGTTCACGAAGCTTTGGCAACTTGTGGAACCGCCGCAAACA
CGAACGTAATATCCACGGCATCGACGATCCGACGCCGCGCCAGCCGCGCC
GCTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:54418..55472-

>Ggra9350.t1 ID=Ggra9350.t1|Name=Ggra9350.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000883_pilon:54418..55472- (Gracilaria gracilis GNS1m male)
ATGGACTTGTCTCAAATCGTTCACGGACCACTTCCCAAGTCGGACAATTC
GCATCGTCGAGCCCGCTACGAGCGACAAAACAGCAACCGAAACTTCCCAG
CACCGCAACGTACCTCACGCGCCGCAGGTAGTAGCGGAAATGGCGCACAT
AACTTCGAGACGCCCGTGTTAAGACCGGGGCATTCTCTTCTTCCAGTGCC
CGCGGGTGCAAGCCCAGACCTTCAGCTCGGCGGCGGCAACGCGAGCGTGG
TTGGCGGTGCAAGTAGTAGCGCGATTGGCGGCGGTGGCGGAGCTCCGATA
TCGGCTTTGCTTCGCAACGACCCTCGGCCGACGACTCAGTCGACCCCTCG
CACTCGCCCTGACACGAAACGGAAGAAGTGTTCCATCTGCGGCAAGTCGT
TCTACTCCAGTACGCACGTCGAAATCCATGAGAACACGGTTCATCGCGGT
ATTAAGAACCATCAATGCCAAATCTGCCCGGCGCGATTTGGACAGAGCGG
AACGCTAACGCGTCATCTACGCACGGTGCACGAAAAGCGACGCGATCACG
AATGCAAGGAGCCGTTTTGCGGCAAGCGTTTCAGCTCCGCATGGAGTCTC
AAAGTTCACACCCAAAACGTGCACGAAAAACTTCGACCTTACGTGTGCCG
AGCCCCGGGGTGTTCACGAAGCTTTGGCAACTTGTGGAACCGCCGCAAAC
ACGAACGTAATATCCACGGCATCGACGATCCGACGCCGCGCCAGCCGCGC
CGCTGA
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