Ggra9396.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9396.t1
Unique NameGgra9396.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length562
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:308113..309798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMJ240CT
Preferred nameSPTLC2
PFAMsAminotran_1_2
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC02725,RC02849
KEGG koko:K00654
KEGG ReactionR01281
KEGG Pathwayko00600,ko01100,ko04071,ko04138,map00600,map01100,map04071,map04138
KEGG ModuleM00094,M00099
GOsGO:0002178,GO:0003674,GO:0003824,GO:0004758,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005789,GO:0005886,GO:0006066,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007444,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009314,GO:0009416,GO:0009555,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0009888,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010506,GO:0010508,GO:0010941,GO:0012505,GO:0016020,GO:0016239,GO:0016241,GO:0016408,GO:0016409,GO:0016454,GO:0016740,GO:0016746,GO:0016747,GO:0017059,GO:0019222,GO:0019637,GO:0019751,GO:0030148,GO:0031211,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0034311,GO:0034312,GO:0034641,GO:0035295,GO:0035339,GO:0042175,GO:0043067,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048229,GO:0048513,GO:0048518,GO:0048522,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0060429,GO:0065007,GO:0071704,GO:0071944,GO:0090407,GO:0097164,GO:0098796,GO:0098827,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617,GO:1902494,GO:1904502,GO:1904504,GO:1905961,GO:1990234
Evalue2.47e-201
EggNOG OGsCOG0156@1|root,KOG1357@2759|Eukaryota
EC2.3.1.50
Descriptionserine C-palmitoyltransferase activity
COG categoryH
BiGG ReactioniMM904.YDR062W,iND750.YDR062W
BRITEko00000,ko00001,ko00002,ko01000,ko01007
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9396Ggra9396Gracilaria gracilis GNS1m malegenetig00000883_pilon 308113..309798 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9396.t1.start1Ggra9396.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 308113..308115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9396.t1.CDS1Ggra9396.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 308113..309798 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9396.t1.exon1Ggra9396.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 308113..309798 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9396.t1.stop1Ggra9396.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 309796..309798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9396.t1Ggra9396.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 308113..309798 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9396.t1 ID=Ggra9396.t1|Name=Ggra9396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=562bp
MAEKGVAPHSTYGELPYLTALTTYLGYAVLIVFGYVRDACGRLLNAGSYA
ARQAGQSQGRAPLLSDFDDFYTRRLYQRINDCWGRPIRGTAGAWIDVLER
VKEQQWCPLGRLVDRLYVPTDAVVSRAASQRSLPSDPTGRVTRCLNLGSY
NYLGYAEVPGGVHSSVTNALDECGVASCDVSVSTGRSAIVRKLESTVAAF
LGKEDAIVVGMGFATNSQIIPAIVGKGDLLISDALNHASIVVGARSSGAK
IRVFEHNSADSLESTIHDAIAAGQPGTGAPWNRIMIVVEGMYSMEGQTCN
LREIVAVKKKYGAYLYLDEAHSIGALGPTGRGVSEHHGVDTRDIDIMMGT
FTKSFGAVGGYIASDSALIEHIRALSPASLYASAMSPPCAQHINWAFEQL
MGKDGTDVGKNKIRQLRENAIYFRKQLNKMGVQTLGDWDSPVIPIMLYNP
AKIAAFSRECYSRGLAVVVAGFPATPLLLSRARICLSAAHSREDLDWALC
VIDEVADIIQIKYDRSFATKCLPRSWANFFTGNQRSQECLSNFEGHEYCK
GRHCLMRTHSM*
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spliced messenger RNA

>Ggra9396.t1 ID=Ggra9396.t1|Name=Ggra9396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000883_pilon:308113..309798+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGAGAAGGGCGTTGCGCCGCATTCGACGTATGGCGAGTTGCCGTA
CCTCACCGCGCTCACGACGTACCTTGGGTACGCCGTGCTCATTGTGTTCG
GCTATGTGCGCGATGCGTGTGGCCGCTTGTTGAATGCCGGCTCGTACGCC
GCCAGACAGGCCGGACAATCGCAAGGGCGCGCCCCCTTGCTCAGCGACTT
TGACGACTTTTACACGCGCCGCCTGTACCAGAGGATTAACGACTGTTGGG
GACGTCCCATCCGCGGCACGGCCGGCGCGTGGATCGACGTGTTGGAGAGA
GTCAAGGAGCAGCAGTGGTGCCCGCTTGGTCGACTGGTTGATCGTCTTTA
CGTGCCTACTGACGCTGTTGTCAGCCGTGCGGCCTCTCAGCGTTCGTTGC
CGTCCGATCCTACCGGCAGGGTCACGCGCTGTCTCAATTTGGGTAGTTAC
AACTATCTCGGGTACGCTGAGGTGCCTGGCGGCGTGCATTCGTCCGTCAC
GAATGCGTTGGATGAATGTGGCGTTGCTTCGTGCGATGTGTCCGTGTCGA
CGGGGCGCTCTGCGATTGTTCGCAAGTTGGAGAGCACCGTCGCGGCCTTT
TTGGGCAAGGAGGATGCCATTGTGGTGGGAATGGGCTTTGCGACCAACTC
GCAGATCATCCCGGCCATTGTGGGTAAGGGCGATCTCCTCATCTCCGATG
CTCTCAATCATGCGTCTATTGTGGTGGGCGCTCGCTCGTCCGGCGCGAAG
ATTCGCGTGTTTGAACATAATTCGGCAGACTCGTTGGAGAGCACCATTCA
TGACGCCATTGCCGCGGGACAGCCGGGCACAGGCGCTCCGTGGAATCGCA
TCATGATCGTGGTGGAGGGGATGTACTCTATGGAGGGTCAGACGTGTAAT
CTAAGGGAGATTGTCGCCGTGAAGAAGAAGTATGGCGCGTACTTGTACTT
GGATGAGGCGCATTCAATTGGGGCGCTTGGACCTACGGGACGAGGTGTGT
CTGAGCATCATGGTGTGGACACTCGGGATATTGATATCATGATGGGTACC
TTCACCAAATCGTTTGGTGCGGTTGGAGGTTACATTGCCTCTGATTCTGC
CCTCATTGAACATATTCGTGCGCTTTCACCGGCTTCTTTGTACGCTTCTG
CTATGTCTCCTCCGTGCGCGCAGCACATTAACTGGGCTTTCGAGCAGCTG
ATGGGGAAGGATGGTACTGATGTGGGGAAGAATAAGATTCGCCAACTGCG
AGAGAATGCCATCTATTTCCGGAAACAGCTGAACAAGATGGGTGTGCAAA
CTCTTGGAGACTGGGACTCGCCCGTCATTCCAATCATGTTGTACAACCCC
GCGAAGATCGCGGCGTTCTCTAGAGAGTGCTACTCGAGGGGTTTGGCTGT
GGTGGTTGCTGGATTCCCGGCGACGCCGTTGCTTTTGTCAAGGGCTAGGA
TTTGTTTAAGCGCGGCTCATAGCCGTGAGGACTTGGACTGGGCTCTTTGT
GTCATTGATGAGGTGGCCGATATTATTCAGATCAAGTACGATCGTTCGTT
TGCGACCAAGTGTTTGCCGAGGTCGTGGGCTAACTTTTTCACGGGGAACC
AACGTTCGCAGGAGTGTCTGTCTAACTTTGAGGGTCATGAGTATTGCAAG
GGACGTCATTGCCTGATGCGTACTCATTCAATGTAG
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protein sequence of Ggra9396.t1

>Ggra9396.t1 ID=Ggra9396.t1|Name=Ggra9396.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=562bp
MAEKGVAPHSTYGELPYLTALTTYLGYAVLIVFGYVRDACGRLLNAGSYA
ARQAGQSQGRAPLLSDFDDFYTRRLYQRINDCWGRPIRGTAGAWIDVLER
VKEQQWCPLGRLVDRLYVPTDAVVSRAASQRSLPSDPTGRVTRCLNLGSY
NYLGYAEVPGGVHSSVTNALDECGVASCDVSVSTGRSAIVRKLESTVAAF
LGKEDAIVVGMGFATNSQIIPAIVGKGDLLISDALNHASIVVGARSSGAK
IRVFEHNSADSLESTIHDAIAAGQPGTGAPWNRIMIVVEGMYSMEGQTCN
LREIVAVKKKYGAYLYLDEAHSIGALGPTGRGVSEHHGVDTRDIDIMMGT
FTKSFGAVGGYIASDSALIEHIRALSPASLYASAMSPPCAQHINWAFEQL
MGKDGTDVGKNKIRQLRENAIYFRKQLNKMGVQTLGDWDSPVIPIMLYNP
AKIAAFSRECYSRGLAVVVAGFPATPLLLSRARICLSAAHSREDLDWALC
VIDEVADIIQIKYDRSFATKCLPRSWANFFTGNQRSQECLSNFEGHEYCK
GRHCLMRTHSM*
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mRNA from alignment at tig00000883_pilon:308113..309798+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9396.t1 ID=Ggra9396.t1|Name=Ggra9396.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1686bp|location=Sequence derived from alignment at tig00000883_pilon:308113..309798+ (Gracilaria gracilis GNS1m male)
ATGGCGGAGAAGGGCGTTGCGCCGCATTCGACGTATGGCGAGTTGCCGTA
CCTCACCGCGCTCACGACGTACCTTGGGTACGCCGTGCTCATTGTGTTCG
GCTATGTGCGCGATGCGTGTGGCCGCTTGTTGAATGCCGGCTCGTACGCC
GCCAGACAGGCCGGACAATCGCAAGGGCGCGCCCCCTTGCTCAGCGACTT
TGACGACTTTTACACGCGCCGCCTGTACCAGAGGATTAACGACTGTTGGG
GACGTCCCATCCGCGGCACGGCCGGCGCGTGGATCGACGTGTTGGAGAGA
GTCAAGGAGCAGCAGTGGTGCCCGCTTGGTCGACTGGTTGATCGTCTTTA
CGTGCCTACTGACGCTGTTGTCAGCCGTGCGGCCTCTCAGCGTTCGTTGC
CGTCCGATCCTACCGGCAGGGTCACGCGCTGTCTCAATTTGGGTAGTTAC
AACTATCTCGGGTACGCTGAGGTGCCTGGCGGCGTGCATTCGTCCGTCAC
GAATGCGTTGGATGAATGTGGCGTTGCTTCGTGCGATGTGTCCGTGTCGA
CGGGGCGCTCTGCGATTGTTCGCAAGTTGGAGAGCACCGTCGCGGCCTTT
TTGGGCAAGGAGGATGCCATTGTGGTGGGAATGGGCTTTGCGACCAACTC
GCAGATCATCCCGGCCATTGTGGGTAAGGGCGATCTCCTCATCTCCGATG
CTCTCAATCATGCGTCTATTGTGGTGGGCGCTCGCTCGTCCGGCGCGAAG
ATTCGCGTGTTTGAACATAATTCGGCAGACTCGTTGGAGAGCACCATTCA
TGACGCCATTGCCGCGGGACAGCCGGGCACAGGCGCTCCGTGGAATCGCA
TCATGATCGTGGTGGAGGGGATGTACTCTATGGAGGGTCAGACGTGTAAT
CTAAGGGAGATTGTCGCCGTGAAGAAGAAGTATGGCGCGTACTTGTACTT
GGATGAGGCGCATTCAATTGGGGCGCTTGGACCTACGGGACGAGGTGTGT
CTGAGCATCATGGTGTGGACACTCGGGATATTGATATCATGATGGGTACC
TTCACCAAATCGTTTGGTGCGGTTGGAGGTTACATTGCCTCTGATTCTGC
CCTCATTGAACATATTCGTGCGCTTTCACCGGCTTCTTTGTACGCTTCTG
CTATGTCTCCTCCGTGCGCGCAGCACATTAACTGGGCTTTCGAGCAGCTG
ATGGGGAAGGATGGTACTGATGTGGGGAAGAATAAGATTCGCCAACTGCG
AGAGAATGCCATCTATTTCCGGAAACAGCTGAACAAGATGGGTGTGCAAA
CTCTTGGAGACTGGGACTCGCCCGTCATTCCAATCATGTTGTACAACCCC
GCGAAGATCGCGGCGTTCTCTAGAGAGTGCTACTCGAGGGGTTTGGCTGT
GGTGGTTGCTGGATTCCCGGCGACGCCGTTGCTTTTGTCAAGGGCTAGGA
TTTGTTTAAGCGCGGCTCATAGCCGTGAGGACTTGGACTGGGCTCTTTGT
GTCATTGATGAGGTGGCCGATATTATTCAGATCAAGTACGATCGTTCGTT
TGCGACCAAGTGTTTGCCGAGGTCGTGGGCTAACTTTTTCACGGGGAACC
AACGTTCGCAGGAGTGTCTGTCTAACTTTGAGGGTCATGAGTATTGCAAG
GGACGTCATTGCCTGATGCGTACTCATTCAATGTAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:308113..309798+

>Ggra9396.t1 ID=Ggra9396.t1|Name=Ggra9396.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1686bp|location=Sequence derived from alignment at tig00000883_pilon:308113..309798+ (Gracilaria gracilis GNS1m male)
ATGGCGGAGAAGGGCGTTGCGCCGCATTCGACGTATGGCGAGTTGCCGTA
CCTCACCGCGCTCACGACGTACCTTGGGTACGCCGTGCTCATTGTGTTCG
GCTATGTGCGCGATGCGTGTGGCCGCTTGTTGAATGCCGGCTCGTACGCC
GCCAGACAGGCCGGACAATCGCAAGGGCGCGCCCCCTTGCTCAGCGACTT
TGACGACTTTTACACGCGCCGCCTGTACCAGAGGATTAACGACTGTTGGG
GACGTCCCATCCGCGGCACGGCCGGCGCGTGGATCGACGTGTTGGAGAGA
GTCAAGGAGCAGCAGTGGTGCCCGCTTGGTCGACTGGTTGATCGTCTTTA
CGTGCCTACTGACGCTGTTGTCAGCCGTGCGGCCTCTCAGCGTTCGTTGC
CGTCCGATCCTACCGGCAGGGTCACGCGCTGTCTCAATTTGGGTAGTTAC
AACTATCTCGGGTACGCTGAGGTGCCTGGCGGCGTGCATTCGTCCGTCAC
GAATGCGTTGGATGAATGTGGCGTTGCTTCGTGCGATGTGTCCGTGTCGA
CGGGGCGCTCTGCGATTGTTCGCAAGTTGGAGAGCACCGTCGCGGCCTTT
TTGGGCAAGGAGGATGCCATTGTGGTGGGAATGGGCTTTGCGACCAACTC
GCAGATCATCCCGGCCATTGTGGGTAAGGGCGATCTCCTCATCTCCGATG
CTCTCAATCATGCGTCTATTGTGGTGGGCGCTCGCTCGTCCGGCGCGAAG
ATTCGCGTGTTTGAACATAATTCGGCAGACTCGTTGGAGAGCACCATTCA
TGACGCCATTGCCGCGGGACAGCCGGGCACAGGCGCTCCGTGGAATCGCA
TCATGATCGTGGTGGAGGGGATGTACTCTATGGAGGGTCAGACGTGTAAT
CTAAGGGAGATTGTCGCCGTGAAGAAGAAGTATGGCGCGTACTTGTACTT
GGATGAGGCGCATTCAATTGGGGCGCTTGGACCTACGGGACGAGGTGTGT
CTGAGCATCATGGTGTGGACACTCGGGATATTGATATCATGATGGGTACC
TTCACCAAATCGTTTGGTGCGGTTGGAGGTTACATTGCCTCTGATTCTGC
CCTCATTGAACATATTCGTGCGCTTTCACCGGCTTCTTTGTACGCTTCTG
CTATGTCTCCTCCGTGCGCGCAGCACATTAACTGGGCTTTCGAGCAGCTG
ATGGGGAAGGATGGTACTGATGTGGGGAAGAATAAGATTCGCCAACTGCG
AGAGAATGCCATCTATTTCCGGAAACAGCTGAACAAGATGGGTGTGCAAA
CTCTTGGAGACTGGGACTCGCCCGTCATTCCAATCATGTTGTACAACCCC
GCGAAGATCGCGGCGTTCTCTAGAGAGTGCTACTCGAGGGGTTTGGCTGT
GGTGGTTGCTGGATTCCCGGCGACGCCGTTGCTTTTGTCAAGGGCTAGGA
TTTGTTTAAGCGCGGCTCATAGCCGTGAGGACTTGGACTGGGCTCTTTGT
GTCATTGATGAGGTGGCCGATATTATTCAGATCAAGTACGATCGTTCGTT
TGCGACCAAGTGTTTGCCGAGGTCGTGGGCTAACTTTTTCACGGGGAACC
AACGTTCGCAGGAGTGTCTGTCTAACTTTGAGGGTCATGAGTATTGCAAG
GGACGTCATTGCCTGATGCGTACTCATTCAATGTAG
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