Ggra9378.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9378.t1
Unique NameGgra9378.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length161
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:199963..200797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog33178.CADATEAP00002648
PFAMsNACHT,zf-C2H2
Max annot lvl4751|Fungi
Evalue0.000461
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,39YRZ@33154|Opisthokonta,3P15N@4751|Fungi,3QPME@4890|Ascomycota,20FEN@147545|Eurotiomycetes
DescriptionNACHT domain
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9378Ggra9378Gracilaria gracilis GNS1m malegenetig00000883_pilon 199963..200797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1Ggra9378.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 199963..200797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1.stop1Ggra9378.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 199963..199965 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1.CDS1Ggra9378.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 199963..200162 -
Ggra9378.t1.CDS2Ggra9378.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 200276..200319 -
Ggra9378.t1.CDS3Ggra9378.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000883_pilon 200456..200541 -
Ggra9378.t1.CDS4Ggra9378.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000883_pilon 200645..200797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1.exon1Ggra9378.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 199963..200162 -
Ggra9378.t1.exon2Ggra9378.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 200276..200319 -
Ggra9378.t1.exon3Ggra9378.t1.exon3Gracilaria gracilis GNS1m maleexontig00000883_pilon 200456..200541 -
Ggra9378.t1.exon4Ggra9378.t1.exon4Gracilaria gracilis GNS1m maleexontig00000883_pilon 200645..200797 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1.intron1Ggra9378.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 200163..200275 -
Ggra9378.t1.intron2Ggra9378.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000883_pilon 200320..200455 -
Ggra9378.t1.intron3Ggra9378.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000883_pilon 200542..200644 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9378.t1.start1Ggra9378.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 200795..200797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9378.t1 ID=Ggra9378.t1|Name=Ggra9378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=161bp
MDSQKSSRKRRSPDGEVNSEGHSERKSLKIGNQVICRKCGLRFNYEYELG
KHNRNAHSNLPSECPVCFLTFKRASYFRRHFRTIHEGKPRLIPLSCDTCK
QQFSEARILSQHIMELHDKVGDFQCDHCGQKYKQKSHLEVHIVVDHTPMA
GSSTTPSKKV*
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spliced messenger RNA

>Ggra9378.t1 ID=Ggra9378.t1|Name=Ggra9378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=483bp|location=Sequence derived from alignment at tig00000883_pilon:199963..200797- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATTCACAAAAAAGCAGCCGTAAGCGCCGCTCGCCCGATGGAGAAGT
AAACTCAGAGGGCCATTCAGAACGGAAATCCTTGAAAATAGGAAACCAAG
TAATTTGTCGGAAGTGTGGCTTGAGATTTAATTACGAATATGAGCTCGGA
AAGCACAACAGAAACGCCCATAGCAACCTTCCAAGTGAATGTCCAGTCTG
TTTTTTAACCTTTAAGAGAGCCTCTTATTTTAGAAGACATTTTCGAACTA
TTCACGAGGGAAAACCAAGATTGATACCTCTCTCGTGCGATACTTGCAAA
CAGCAGTTCTCTGAGGCACGAATTTTGAGTCAGCATATAATGGAACTTCA
TGACAAAGTAGGAGATTTTCAATGTGATCACTGCGGTCAGAAGTACAAGC
AAAAATCCCATTTGGAAGTACACATTGTCGTCGACCATACCCCTATGGCG
GGTTCCAGTACCACTCCGTCCAAGAAAGTTTAA
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protein sequence of Ggra9378.t1

>Ggra9378.t1 ID=Ggra9378.t1|Name=Ggra9378.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=161bp
MDSQKSSRKRRSPDGEVNSEGHSERKSLKIGNQVICRKCGLRFNYEYELG
KHNRNAHSNLPSECPVCFLTFKRASYFRRHFRTIHEGKPRLIPLSCDTCK
QQFSEARILSQHIMELHDKVGDFQCDHCGQKYKQKSHLEVHIVVDHTPMA
GSSTTPSKKV*
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mRNA from alignment at tig00000883_pilon:199963..200797-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9378.t1 ID=Ggra9378.t1|Name=Ggra9378.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=835bp|location=Sequence derived from alignment at tig00000883_pilon:199963..200797- (Gracilaria gracilis GNS1m male)
ATGGATTCACAAAAAAGCAGCCGTAAGCGCCGCTCGCCCGATGGAGAAGT
AAACTCAGAGGGCCATTCAGAACGGAAATCCTTGAAAATAGGAAACCAAG
TAATTTGTCGGAAGTGTGGCTTGAGATTTAATTACGAATATGAGCTCGGA
AAGGTAAGCTATAAACTTCTACTTTGCCGCTTTTGACATTAGCACTTTTG
AAAAGGACTGACAGAGAACGTTTTTCTCGGTATGAAACATCTTGAACAAA
ATCAAGCACAACAGAAACGCCCATAGCAACCTTCCAAGTGAATGTCCAGT
CTGTTTTTTAACCTTTAAGAGAGCCTCTTATTTTAGAAGACAGTATGTCG
AACATCCTTACTAATGGTTACCGAGGCCTTAACATCGGATGCAGATTAAC
TAACAGAAGAAATTCTACATATTTTCATTTCAACCCTCATGCTCAAAACC
CCATAAAATCAACTAAAACGGAAAAAAGTTTTCGAACTATTCACGAGGGA
AAACCAAGATTGATACCTCTCTGTAAGTGAAGCTCTCCAAATGAGTTTTC
CCTTGATTTGGAGAACCTGAACCTGAACCAAGACTGATTTTAACGTTAAT
GTGCTCTTTTGTTATGTGCGGAACTAATTTCTCAGCGTGCGATACTTGCA
AACAGCAGTTCTCTGAGGCACGAATTTTGAGTCAGCATATAATGGAACTT
CATGACAAAGTAGGAGATTTTCAATGTGATCACTGCGGTCAGAAGTACAA
GCAAAAATCCCATTTGGAAGTACACATTGTCGTCGACCATACCCCTATGG
CGGGTTCCAGTACCACTCCGTCCAAGAAAGTTTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:199963..200797-

>Ggra9378.t1 ID=Ggra9378.t1|Name=Ggra9378.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=483bp|location=Sequence derived from alignment at tig00000883_pilon:199963..200797- (Gracilaria gracilis GNS1m male)
ATGGATTCACAAAAAAGCAGCCGTAAGCGCCGCTCGCCCGATGGAGAAGT
AAACTCAGAGGGCCATTCAGAACGGAAATCCTTGAAAATAGGAAACCAAG
TAATTTGTCGGAAGTGTGGCTTGAGATTTAATTACGAATATGAGCTCGGA
AAGCACAACAGAAACGCCCATAGCAACCTTCCAAGTGAATGTCCAGTCTG
TTTTTTAACCTTTAAGAGAGCCTCTTATTTTAGAAGACATTTTCGAACTA
TTCACGAGGGAAAACCAAGATTGATACCTCTCTCGTGCGATACTTGCAAA
CAGCAGTTCTCTGAGGCACGAATTTTGAGTCAGCATATAATGGAACTTCA
TGACAAAGTAGGAGATTTTCAATGTGATCACTGCGGTCAGAAGTACAAGC
AAAAATCCCATTTGGAAGTACACATTGTCGTCGACCATACCCCTATGGCG
GGTTCCAGTACCACTCCGTCCAAGAAAGTTTAA
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