Ggra9342.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9342.t1
Unique NameGgra9342.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length117
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:36871..37221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9342Ggra9342Gracilaria gracilis GNS1m malegenetig00000883_pilon 36871..37221 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9342.t1.start1Ggra9342.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 36871..36873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9342.t1.CDS1Ggra9342.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 36871..37221 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9342.t1.exon1Ggra9342.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 36871..37221 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9342.t1.stop1Ggra9342.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 37219..37221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9342.t1Ggra9342.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 36871..37221 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9342.t1 ID=Ggra9342.t1|Name=Ggra9342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=117bp
MIDRVLPPLLRLFQPPSLTAVSHKRGETETIFNDPSNENKAASADAVTRA
VYTTVALCVVSGVLLLAWWYHGNKRVDRDRLFRHDAWTAADEQAARSAAG
AAQIEATDGDDVTRSA*
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spliced messenger RNA

>Ggra9342.t1 ID=Ggra9342.t1|Name=Ggra9342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000883_pilon:36871..37221+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTGATCGCGTGCTCCCACCGTTGCTGCGCCTTTTCCAGCCGCCTTC
TCTGACAGCGGTGTCGCACAAACGCGGCGAGACGGAGACAATCTTCAATG
ACCCCAGCAACGAGAACAAAGCGGCGTCAGCCGACGCGGTGACGCGCGCG
GTGTACACGACGGTGGCGCTGTGCGTGGTGTCCGGCGTGCTGCTGCTGGC
GTGGTGGTACCACGGCAACAAGCGCGTCGACAGAGATCGGCTGTTCCGAC
ATGACGCGTGGACGGCGGCCGATGAGCAGGCGGCGCGTTCCGCCGCAGGC
GCCGCACAGATCGAAGCGACGGACGGCGACGACGTGACGCGCAGCGCTTA
G
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protein sequence of Ggra9342.t1

>Ggra9342.t1 ID=Ggra9342.t1|Name=Ggra9342.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=117bp
MIDRVLPPLLRLFQPPSLTAVSHKRGETETIFNDPSNENKAASADAVTRA
VYTTVALCVVSGVLLLAWWYHGNKRVDRDRLFRHDAWTAADEQAARSAAG
AAQIEATDGDDVTRSA*
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mRNA from alignment at tig00000883_pilon:36871..37221+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9342.t1 ID=Ggra9342.t1|Name=Ggra9342.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=351bp|location=Sequence derived from alignment at tig00000883_pilon:36871..37221+ (Gracilaria gracilis GNS1m male)
ATGATTGATCGCGTGCTCCCACCGTTGCTGCGCCTTTTCCAGCCGCCTTC
TCTGACAGCGGTGTCGCACAAACGCGGCGAGACGGAGACAATCTTCAATG
ACCCCAGCAACGAGAACAAAGCGGCGTCAGCCGACGCGGTGACGCGCGCG
GTGTACACGACGGTGGCGCTGTGCGTGGTGTCCGGCGTGCTGCTGCTGGC
GTGGTGGTACCACGGCAACAAGCGCGTCGACAGAGATCGGCTGTTCCGAC
ATGACGCGTGGACGGCGGCCGATGAGCAGGCGGCGCGTTCCGCCGCAGGC
GCCGCACAGATCGAAGCGACGGACGGCGACGACGTGACGCGCAGCGCTTA
G
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Coding sequence (CDS) from alignment at tig00000883_pilon:36871..37221+

>Ggra9342.t1 ID=Ggra9342.t1|Name=Ggra9342.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=351bp|location=Sequence derived from alignment at tig00000883_pilon:36871..37221+ (Gracilaria gracilis GNS1m male)
ATGATTGATCGCGTGCTCCCACCGTTGCTGCGCCTTTTCCAGCCGCCTTC
TCTGACAGCGGTGTCGCACAAACGCGGCGAGACGGAGACAATCTTCAATG
ACCCCAGCAACGAGAACAAAGCGGCGTCAGCCGACGCGGTGACGCGCGCG
GTGTACACGACGGTGGCGCTGTGCGTGGTGTCCGGCGTGCTGCTGCTGGC
GTGGTGGTACCACGGCAACAAGCGCGTCGACAGAGATCGGCTGTTCCGAC
ATGACGCGTGGACGGCGGCCGATGAGCAGGCGGCGCGTTCCGCCGCAGGC
GCCGCACAGATCGAAGCGACGGACGGCGACGACGTGACGCGCAGCGCTTA
G
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