Ggra9344.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9344.t1
Unique NameGgra9344.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length480
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:38395..39834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD16012
Max annot lvl2903.EOD16012|-
Evalue3.38e-08
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9344Ggra9344Gracilaria gracilis GNS1m malegenetig00000883_pilon 38395..39834 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9344.t1.start1Ggra9344.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 38395..38397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9344.t1.CDS1Ggra9344.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 38395..39834 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9344.t1.exon1Ggra9344.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 38395..39834 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9344.t1.stop1Ggra9344.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 39832..39834 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9344.t1Ggra9344.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 38395..39834 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9344.t1 ID=Ggra9344.t1|Name=Ggra9344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp
MVEIIDLLSDTELTPRVRRSRPRPVLNDPELAIVSEHIRPLHRSPTQRTS
PHPSTPPANALDQPSSSTAPGSSRRAVDDDSSPPEVVALRKGVNPLQDYA
HPRFSCTREPFSAESAAKYCPKCFCFVCDIKADKCTAWSEHCGAIDDDAW
RRKRRDVRKASRRYDRGVDRLAKDARRREKRARHEQERRLVLEALGEDRD
YAAVMAEQAEIVSQYHTAVGTHASPNPLSTANHSSASPPFALAAAQQRLQ
ALRQTAPAHRGLRSILPFRPPIGVSERCAPLPTSLMRTPSNRLHASHAAN
PAAGAAPSISAHPSVALLGSPARTDTDENSEDSDVVREPPNPLDTNHLPK
NPILSPLQLEQVLAMQSSLFRGQFGGTEPTSREKTEITPDEEAPTARNIS
RRRNVLDNSDAGKASRPSFGIRYGDRRPPFVEETVNDRSRSKKRRRGRTE
DRGSRRDRSSSGPPSRLRKVARSRRSGPH*
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spliced messenger RNA

>Ggra9344.t1 ID=Ggra9344.t1|Name=Ggra9344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000883_pilon:38395..39834+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGAAATCATCGACCTTTTGTCGGACACCGAGCTCACCCCTCGCGT
CCGTCGCAGTCGACCACGGCCTGTGCTCAACGATCCTGAGCTCGCCATCG
TGAGCGAGCACATCCGACCCCTGCATCGCTCGCCCACACAGCGCACGTCA
CCACACCCTTCCACACCGCCGGCCAACGCCCTGGACCAGCCGTCGTCATC
CACCGCCCCCGGCAGCAGCAGACGCGCCGTTGACGATGATTCTTCGCCAC
CAGAGGTGGTGGCGCTCAGGAAGGGCGTCAATCCTCTGCAGGATTATGCA
CATCCCAGGTTCTCATGCACTCGTGAGCCATTCAGCGCCGAGTCGGCCGC
CAAGTATTGCCCCAAGTGTTTCTGTTTCGTGTGTGATATCAAAGCCGACA
AGTGCACCGCGTGGAGTGAGCATTGTGGCGCCATTGACGATGACGCGTGG
AGGCGAAAGAGGAGGGATGTCAGGAAGGCCTCCAGGCGCTATGACAGAGG
TGTCGACCGTCTGGCAAAGGACGCTCGTCGCCGAGAGAAGAGAGCCAGGC
ACGAGCAAGAGCGCAGGTTGGTGCTGGAAGCCCTAGGTGAAGACAGGGAT
TATGCCGCCGTCATGGCCGAACAGGCTGAGATTGTCTCTCAGTATCATAC
CGCCGTAGGCACACACGCTTCCCCCAATCCCCTTTCCACCGCCAACCACT
CCTCAGCAAGCCCTCCTTTCGCTTTGGCCGCCGCGCAGCAGCGTTTGCAA
GCCCTTCGACAAACTGCCCCTGCCCACCGCGGCCTACGCTCCATCCTCCC
TTTCAGGCCACCAATAGGCGTTTCCGAGCGGTGCGCACCGTTGCCAACGA
GCTTGATGCGCACGCCCTCCAACCGTTTGCACGCGTCTCATGCCGCGAAT
CCAGCTGCGGGCGCCGCCCCCAGCATCAGTGCACATCCGTCCGTTGCACT
GCTGGGATCCCCTGCGAGGACGGACACTGACGAAAATTCAGAAGACAGTG
ACGTCGTCCGAGAACCGCCCAACCCGCTAGACACCAACCACCTCCCGAAG
AATCCGATTCTCAGTCCTCTCCAGCTGGAGCAGGTGCTGGCTATGCAATC
CAGTCTCTTTCGCGGTCAGTTCGGCGGAACGGAGCCCACATCGCGGGAGA
AAACAGAGATCACACCGGATGAGGAGGCGCCAACTGCGCGCAATATAAGT
AGGCGCCGCAACGTTTTGGATAACAGCGATGCTGGAAAGGCTTCCCGGCC
TTCTTTCGGCATCCGCTATGGCGATCGCCGCCCTCCTTTTGTGGAAGAGA
CCGTTAATGATAGGTCTAGGTCAAAGAAGCGCCGCAGAGGAAGAACGGAA
GACAGGGGTAGTCGGAGAGACCGCTCGTCCTCTGGCCCACCTTCTCGCCT
GAGGAAGGTGGCGAGATCGAGGCGTTCGGGTCCCCACTAG
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protein sequence of Ggra9344.t1

>Ggra9344.t1 ID=Ggra9344.t1|Name=Ggra9344.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=480bp
MVEIIDLLSDTELTPRVRRSRPRPVLNDPELAIVSEHIRPLHRSPTQRTS
PHPSTPPANALDQPSSSTAPGSSRRAVDDDSSPPEVVALRKGVNPLQDYA
HPRFSCTREPFSAESAAKYCPKCFCFVCDIKADKCTAWSEHCGAIDDDAW
RRKRRDVRKASRRYDRGVDRLAKDARRREKRARHEQERRLVLEALGEDRD
YAAVMAEQAEIVSQYHTAVGTHASPNPLSTANHSSASPPFALAAAQQRLQ
ALRQTAPAHRGLRSILPFRPPIGVSERCAPLPTSLMRTPSNRLHASHAAN
PAAGAAPSISAHPSVALLGSPARTDTDENSEDSDVVREPPNPLDTNHLPK
NPILSPLQLEQVLAMQSSLFRGQFGGTEPTSREKTEITPDEEAPTARNIS
RRRNVLDNSDAGKASRPSFGIRYGDRRPPFVEETVNDRSRSKKRRRGRTE
DRGSRRDRSSSGPPSRLRKVARSRRSGPH*
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mRNA from alignment at tig00000883_pilon:38395..39834+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9344.t1 ID=Ggra9344.t1|Name=Ggra9344.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1440bp|location=Sequence derived from alignment at tig00000883_pilon:38395..39834+ (Gracilaria gracilis GNS1m male)
ATGGTTGAAATCATCGACCTTTTGTCGGACACCGAGCTCACCCCTCGCGT
CCGTCGCAGTCGACCACGGCCTGTGCTCAACGATCCTGAGCTCGCCATCG
TGAGCGAGCACATCCGACCCCTGCATCGCTCGCCCACACAGCGCACGTCA
CCACACCCTTCCACACCGCCGGCCAACGCCCTGGACCAGCCGTCGTCATC
CACCGCCCCCGGCAGCAGCAGACGCGCCGTTGACGATGATTCTTCGCCAC
CAGAGGTGGTGGCGCTCAGGAAGGGCGTCAATCCTCTGCAGGATTATGCA
CATCCCAGGTTCTCATGCACTCGTGAGCCATTCAGCGCCGAGTCGGCCGC
CAAGTATTGCCCCAAGTGTTTCTGTTTCGTGTGTGATATCAAAGCCGACA
AGTGCACCGCGTGGAGTGAGCATTGTGGCGCCATTGACGATGACGCGTGG
AGGCGAAAGAGGAGGGATGTCAGGAAGGCCTCCAGGCGCTATGACAGAGG
TGTCGACCGTCTGGCAAAGGACGCTCGTCGCCGAGAGAAGAGAGCCAGGC
ACGAGCAAGAGCGCAGGTTGGTGCTGGAAGCCCTAGGTGAAGACAGGGAT
TATGCCGCCGTCATGGCCGAACAGGCTGAGATTGTCTCTCAGTATCATAC
CGCCGTAGGCACACACGCTTCCCCCAATCCCCTTTCCACCGCCAACCACT
CCTCAGCAAGCCCTCCTTTCGCTTTGGCCGCCGCGCAGCAGCGTTTGCAA
GCCCTTCGACAAACTGCCCCTGCCCACCGCGGCCTACGCTCCATCCTCCC
TTTCAGGCCACCAATAGGCGTTTCCGAGCGGTGCGCACCGTTGCCAACGA
GCTTGATGCGCACGCCCTCCAACCGTTTGCACGCGTCTCATGCCGCGAAT
CCAGCTGCGGGCGCCGCCCCCAGCATCAGTGCACATCCGTCCGTTGCACT
GCTGGGATCCCCTGCGAGGACGGACACTGACGAAAATTCAGAAGACAGTG
ACGTCGTCCGAGAACCGCCCAACCCGCTAGACACCAACCACCTCCCGAAG
AATCCGATTCTCAGTCCTCTCCAGCTGGAGCAGGTGCTGGCTATGCAATC
CAGTCTCTTTCGCGGTCAGTTCGGCGGAACGGAGCCCACATCGCGGGAGA
AAACAGAGATCACACCGGATGAGGAGGCGCCAACTGCGCGCAATATAAGT
AGGCGCCGCAACGTTTTGGATAACAGCGATGCTGGAAAGGCTTCCCGGCC
TTCTTTCGGCATCCGCTATGGCGATCGCCGCCCTCCTTTTGTGGAAGAGA
CCGTTAATGATAGGTCTAGGTCAAAGAAGCGCCGCAGAGGAAGAACGGAA
GACAGGGGTAGTCGGAGAGACCGCTCGTCCTCTGGCCCACCTTCTCGCCT
GAGGAAGGTGGCGAGATCGAGGCGTTCGGGTCCCCACTAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:38395..39834+

>Ggra9344.t1 ID=Ggra9344.t1|Name=Ggra9344.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1440bp|location=Sequence derived from alignment at tig00000883_pilon:38395..39834+ (Gracilaria gracilis GNS1m male)
ATGGTTGAAATCATCGACCTTTTGTCGGACACCGAGCTCACCCCTCGCGT
CCGTCGCAGTCGACCACGGCCTGTGCTCAACGATCCTGAGCTCGCCATCG
TGAGCGAGCACATCCGACCCCTGCATCGCTCGCCCACACAGCGCACGTCA
CCACACCCTTCCACACCGCCGGCCAACGCCCTGGACCAGCCGTCGTCATC
CACCGCCCCCGGCAGCAGCAGACGCGCCGTTGACGATGATTCTTCGCCAC
CAGAGGTGGTGGCGCTCAGGAAGGGCGTCAATCCTCTGCAGGATTATGCA
CATCCCAGGTTCTCATGCACTCGTGAGCCATTCAGCGCCGAGTCGGCCGC
CAAGTATTGCCCCAAGTGTTTCTGTTTCGTGTGTGATATCAAAGCCGACA
AGTGCACCGCGTGGAGTGAGCATTGTGGCGCCATTGACGATGACGCGTGG
AGGCGAAAGAGGAGGGATGTCAGGAAGGCCTCCAGGCGCTATGACAGAGG
TGTCGACCGTCTGGCAAAGGACGCTCGTCGCCGAGAGAAGAGAGCCAGGC
ACGAGCAAGAGCGCAGGTTGGTGCTGGAAGCCCTAGGTGAAGACAGGGAT
TATGCCGCCGTCATGGCCGAACAGGCTGAGATTGTCTCTCAGTATCATAC
CGCCGTAGGCACACACGCTTCCCCCAATCCCCTTTCCACCGCCAACCACT
CCTCAGCAAGCCCTCCTTTCGCTTTGGCCGCCGCGCAGCAGCGTTTGCAA
GCCCTTCGACAAACTGCCCCTGCCCACCGCGGCCTACGCTCCATCCTCCC
TTTCAGGCCACCAATAGGCGTTTCCGAGCGGTGCGCACCGTTGCCAACGA
GCTTGATGCGCACGCCCTCCAACCGTTTGCACGCGTCTCATGCCGCGAAT
CCAGCTGCGGGCGCCGCCCCCAGCATCAGTGCACATCCGTCCGTTGCACT
GCTGGGATCCCCTGCGAGGACGGACACTGACGAAAATTCAGAAGACAGTG
ACGTCGTCCGAGAACCGCCCAACCCGCTAGACACCAACCACCTCCCGAAG
AATCCGATTCTCAGTCCTCTCCAGCTGGAGCAGGTGCTGGCTATGCAATC
CAGTCTCTTTCGCGGTCAGTTCGGCGGAACGGAGCCCACATCGCGGGAGA
AAACAGAGATCACACCGGATGAGGAGGCGCCAACTGCGCGCAATATAAGT
AGGCGCCGCAACGTTTTGGATAACAGCGATGCTGGAAAGGCTTCCCGGCC
TTCTTTCGGCATCCGCTATGGCGATCGCCGCCCTCCTTTTGTGGAAGAGA
CCGTTAATGATAGGTCTAGGTCAAAGAAGCGCCGCAGAGGAAGAACGGAA
GACAGGGGTAGTCGGAGAGACCGCTCGTCCTCTGGCCCACCTTCTCGCCT
GAGGAAGGTGGCGAGATCGAGGCGTTCGGGTCCCCACTAG
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