Ggra9339.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9339.t1
Unique NameGgra9339.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length202
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:28045..28869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3067.XP_002946011.1
PFAMsPeptidase_C1
Max annot lvl2759|Eukaryota
Evalue2.41e-13
EggNOG OGsCOG4870@1|root,2S8PN@2759|Eukaryota
DescriptionBelongs to the peptidase C1 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9339Ggra9339Gracilaria gracilis GNS1m malegenetig00000883_pilon 28045..28869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9339.t1Ggra9339.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 28045..28869 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9339.t1.stop1Ggra9339.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 28045..28047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9339.t1.CDS1Ggra9339.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 28045..28510 -
Ggra9339.t1.CDS2Ggra9339.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 28583..28642 -
Ggra9339.t1.CDS3Ggra9339.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000883_pilon 28790..28869 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9339.t1.exon1Ggra9339.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 28045..28510 -
Ggra9339.t1.exon2Ggra9339.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 28583..28642 -
Ggra9339.t1.exon3Ggra9339.t1.exon3Gracilaria gracilis GNS1m maleexontig00000883_pilon 28790..28869 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9339.t1.intron1Ggra9339.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 28511..28582 -
Ggra9339.t1.intron2Ggra9339.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000883_pilon 28643..28789 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9339.t1.start1Ggra9339.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 28867..28869 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9339.t1 ID=Ggra9339.t1|Name=Ggra9339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=202bp
MPSSPDPSPSSIATASPSPTSTASSLPQAPSSGEVFYAVESSRSGYGAVN
SQILAQSDNQFRASLNTTEKEEYDRIRDAYNGGLEIPFLRFLGIDLGSTV
TKEKMEQSAEYWGDYNRKSQIAQKILSDTSATELRISGSLTAVGVSENPV
EVFVFIELARVKLRDGSTMTVITNEEDGVVAGDSDSNVVPSGEGALTVLP
F*
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spliced messenger RNA

>Ggra9339.t1 ID=Ggra9339.t1|Name=Ggra9339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=606bp|location=Sequence derived from alignment at tig00000883_pilon:28045..28869- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTTCGTCTCCCGATCCCTCGCCAAGCTCGATCGCCACTGCCTCACC
GTCGCCTACATCCACCGCATCATCGCTTCCCCAAGCCCCTTCAAGTGGAG
AAGTCTTTTACGCTGTTGAGTCGAGTCGATCCGGATACGGAGCTGTAAAC
TCTCAGATATTAGCTCAATCAGATAATCAATTCAGAGCTTCTCTGAATAC
GACTGAGAAGGAAGAGTATGATAGGATCAGGGATGCATACAACGGAGGAC
TGGAGATTCCTTTCCTTCGTTTCCTGGGTATTGACCTTGGGTCTACTGTC
ACCAAGGAAAAGATGGAACAATCTGCCGAGTATTGGGGTGACTACAACAG
AAAGTCCCAGATAGCTCAAAAGATTTTGAGCGACACATCTGCAACTGAGC
TCCGAATCAGCGGCTCTCTGACTGCTGTGGGAGTATCGGAAAACCCTGTC
GAAGTATTTGTCTTCATTGAACTCGCAAGGGTGAAGCTAAGAGATGGATC
GACAATGACCGTCATCACAAACGAGGAAGATGGCGTAGTCGCAGGAGATT
CTGATAGCAACGTTGTACCATCAGGTGAAGGTGCTTTAACCGTTCTACCT
TTCTGA
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protein sequence of Ggra9339.t1

>Ggra9339.t1 ID=Ggra9339.t1|Name=Ggra9339.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=202bp
MPSSPDPSPSSIATASPSPTSTASSLPQAPSSGEVFYAVESSRSGYGAVN
SQILAQSDNQFRASLNTTEKEEYDRIRDAYNGGLEIPFLRFLGIDLGSTV
TKEKMEQSAEYWGDYNRKSQIAQKILSDTSATELRISGSLTAVGVSENPV
EVFVFIELARVKLRDGSTMTVITNEEDGVVAGDSDSNVVPSGEGALTVLP
F*
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mRNA from alignment at tig00000883_pilon:28045..28869-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9339.t1 ID=Ggra9339.t1|Name=Ggra9339.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=825bp|location=Sequence derived from alignment at tig00000883_pilon:28045..28869- (Gracilaria gracilis GNS1m male)
ATGCCTTCGTCTCCCGATCCCTCGCCAAGCTCGATCGCCACTGCCTCACC
GTCGCCTACATCCACCGCATCATCGCTTCCGTCAGTCACAGCGTCAGCGT
CAGCATCAGCAGTAGCGTCAGCATCAGCATCAGCATCAGCATCAGCATCA
GCATCAGCATCAGCATCAGCATCATTGACACCCTCTCCTTCCGCCTCAGT
GTCTCCCTCTCCGTCACCTTCTTTAAGCCAAGCCCCTTCAAGTGGAGAAG
TCTTTTACGCTGTTGAGTCGAGTCGATCCGGATACGGGTGAGTTACCCGC
ATCGGGGTGTCTGTGCAAAAGGGTACAAATGCGACAGTGAACTTTGACAT
CAAAGTTAGAGCTGTAAACTCTCAGATATTAGCTCAATCAGATAATCAAT
TCAGAGCTTCTCTGAATACGACTGAGAAGGAAGAGTATGATAGGATCAGG
GATGCATACAACGGAGGACTGGAGATTCCTTTCCTTCGTTTCCTGGGTAT
TGACCTTGGGTCTACTGTCACCAAGGAAAAGATGGAACAATCTGCCGAGT
ATTGGGGTGACTACAACAGAAAGTCCCAGATAGCTCAAAAGATTTTGAGC
GACACATCTGCAACTGAGCTCCGAATCAGCGGCTCTCTGACTGCTGTGGG
AGTATCGGAAAACCCTGTCGAAGTATTTGTCTTCATTGAACTCGCAAGGG
TGAAGCTAAGAGATGGATCGACAATGACCGTCATCACAAACGAGGAAGAT
GGCGTAGTCGCAGGAGATTCTGATAGCAACGTTGTACCATCAGGTGAAGG
TGCTTTAACCGTTCTACCTTTCTGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:28045..28869-

>Ggra9339.t1 ID=Ggra9339.t1|Name=Ggra9339.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=606bp|location=Sequence derived from alignment at tig00000883_pilon:28045..28869- (Gracilaria gracilis GNS1m male)
ATGCCTTCGTCTCCCGATCCCTCGCCAAGCTCGATCGCCACTGCCTCACC
GTCGCCTACATCCACCGCATCATCGCTTCCCCAAGCCCCTTCAAGTGGAG
AAGTCTTTTACGCTGTTGAGTCGAGTCGATCCGGATACGGAGCTGTAAAC
TCTCAGATATTAGCTCAATCAGATAATCAATTCAGAGCTTCTCTGAATAC
GACTGAGAAGGAAGAGTATGATAGGATCAGGGATGCATACAACGGAGGAC
TGGAGATTCCTTTCCTTCGTTTCCTGGGTATTGACCTTGGGTCTACTGTC
ACCAAGGAAAAGATGGAACAATCTGCCGAGTATTGGGGTGACTACAACAG
AAAGTCCCAGATAGCTCAAAAGATTTTGAGCGACACATCTGCAACTGAGC
TCCGAATCAGCGGCTCTCTGACTGCTGTGGGAGTATCGGAAAACCCTGTC
GAAGTATTTGTCTTCATTGAACTCGCAAGGGTGAAGCTAAGAGATGGATC
GACAATGACCGTCATCACAAACGAGGAAGATGGCGTAGTCGCAGGAGATT
CTGATAGCAACGTTGTACCATCAGGTGAAGGTGCTTTAACCGTTCTACCT
TTCTGA
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