Ggra9401.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9401.t1
Unique NameGgra9401.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Homology
BLAST of Ggra9401.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. TRM72054 TaxID=2870562 RepID=UPI001C8B73EB (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. TRM72054 TaxID=2870562 RepID=UPI001C8B73EB)

HSP 1 Score: 59.3 bits (142), Expect = 2.570e-6
Identity = 57/176 (32.39%), Postives = 83/176 (47.16%), Query Frame = 0
Query:   36 RDLDESQTRVNNVRSLFQPTLVPP-KSNDGFERRYPVSHD------DYRYQ--ECVERNGVTLAYGPVLNPAADFREWKASSVQATFRA--VKSRARENLAGCGK------------MAYNYDRPPGW--LGPRTKCTRGHLLGKQLGGNGLNTRNIVMLFSSANSPVMSGWENII 186
            R +DES TR      L +  L    K   GF+++  +S +      ++  Q   C++  G +  Y   L    D R+ +A+ V A  RA  V  R R   A  GK               +   P GW  L  +    RGHLLG+QLGGNG N RN+V ++++ANS VM G+E+ +
Sbjct:   65 RFVDESFTRSLKDLGLSEKELRRFFKHFPGFDQQGELSEEFKGLLAEWNNQPGNCMKGGGKSWVYYHPL----DSRD-RATGVTACLRADAVDYRGRGRKADPGKDTDIMGGDTTRGRGTDRSNPAGWQHLDGQRGWARGHLLGRQLGGNGRNRRNLVKMYNAANSDVMEGYESAV 235          
BLAST of Ggra9401.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Enterococcus timonensis TaxID=1852364 RepID=UPI0008DA6C3A (DNA/RNA non-specific endonuclease n=1 Tax=Enterococcus timonensis TaxID=1852364 RepID=UPI0008DA6C3A)

HSP 1 Score: 57.8 bits (138), Expect = 4.410e-6
Identity = 40/130 (30.77%), Postives = 62/130 (47.69%), Query Frame = 0
Query:   95 LNPAADFREWKASSVQATFRAVKSRARENLAGCGKMAYNYDRPPGWLGPRTKC--TRGHLLGKQLGGNGLNTRNIVMLFSS-ANSPVMSGWENIIAEVREKLMTNGSRNAVLDYVVKAEYCAGRETPAAI 221
            L   A F E++        +   +  ++NL   G  A    RPPG++        +RGHL+G+QLGG+G + RN+  L+ +  N+P M+ +EN I +  E        N  + Y VK EY      P A+
Sbjct:   73 LQDQAAFIEYEELDSLKRPQGASALLKKNLINTGTSANRDIRPPGFISGEKPYFHSRGHLIGRQLGGSGDDPRNLATLYQNPVNTPYMTTYENQIRQAMED-------NLTVFYQVKVEYDGNNLFPKAV 195          
BLAST of Ggra9401.t1 vs. uniprot
Match: A0A6G8AR96 (DNA-entry nuclease n=1 Tax=Vagococcus hydrophili TaxID=2714947 RepID=A0A6G8AR96_9ENTE)

HSP 1 Score: 57.8 bits (138), Expect = 4.510e-6
Identity = 52/183 (28.42%), Postives = 81/183 (44.26%), Query Frame = 0
Query:   47 NVRSLFQPTLVPPKSNDGFERRYPVSHDD--YRYQECVERNGVTLAYGPVLNPAADFREWKASSVQATFRAVKSRARENLAGCGKMAYNYDRPPGWLGPR--TKCTRGHLLGKQLGGNGLNTRNIVMLFSS-ANSPVMSGWENIIAEVREKLMTNGSRNAVLDYVVKAEYCAGRETPAAIWME 224
            N +   Q T   P S  G +   P+ H D  +  +E  +     + YG          E+       T  A+ + A   + G G  A    RPPG++        +RGHL+G+QLGG+G + +N+V L+ +  N+P M+ +EN++     K   NG     + Y VK  Y      P A+ ME
Sbjct:   44 NTKPTSQKTTQAPSSQSG-DNPGPIEHGDATFTQEEMKDNKKGWIHYG----------EYDQFDRPTTAEALITPA---MIGTGTGAKQDIRPPGFISGTDPNNHSRGHLIGRQLGGSGEDPKNLVTLYQNPVNTPFMTKYENMV----RKAADNGE---TIRYRVKPIYEGDIGMPTAVQME 205          
BLAST of Ggra9401.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces spinoverrucosus TaxID=284043 RepID=UPI001E2A75A8 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces spinoverrucosus TaxID=284043 RepID=UPI001E2A75A8)

HSP 1 Score: 59.3 bits (142), Expect = 5.850e-6
Identity = 57/176 (32.39%), Postives = 83/176 (47.16%), Query Frame = 0
Query:   36 RDLDESQTRVNNVRSLFQPTLVPP-KSNDGFERRYPVSHD------DYRYQ--ECVERNGVTLAYGPVLNPAADFREWKASSVQATFRA--VKSRARENLAGCGK------------MAYNYDRPPGW--LGPRTKCTRGHLLGKQLGGNGLNTRNIVMLFSSANSPVMSGWENII 186
            R +DES TR      L +  L    K   GF+++  +S +      ++  Q   C++  G +  Y   L    D R+ +A+ V A  RA  V  R R   A  GK               +   P GW  L  +    RGHLLG+QLGGNG N RN+V ++++ANS VM G+E+ +
Sbjct:  500 RFVDESFTRSLKDLGLSEKELRRFFKHFPGFDQQGELSEEFKGLLAEWNNQPGNCMKGGGKSWVYYHPL----DSRD-RATGVTACLRADAVDYRGRGRKADPGKDTDIMGGDTTRGRGTDRSNPAGWQHLDGQRGWARGHLLGRQLGGNGRNRRNLVKMYNAANSDVMEGYESAV 670          
BLAST of Ggra9401.t1 vs. uniprot
Match: DNRLRE domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=UPI001489239B (DNRLRE domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=UPI001489239B)

HSP 1 Score: 59.3 bits (142), Expect = 7.540e-6
Identity = 57/176 (32.39%), Postives = 83/176 (47.16%), Query Frame = 0
Query:   36 RDLDESQTRVNNVRSLFQPTLVPP-KSNDGFERRYPVSHD------DYRYQ--ECVERNGVTLAYGPVLNPAADFREWKASSVQATFRA--VKSRARENLAGCGK------------MAYNYDRPPGW--LGPRTKCTRGHLLGKQLGGNGLNTRNIVMLFSSANSPVMSGWENII 186
            R +DES TR      L +  L    K   GF+++  +S +      ++  Q   C++  G +  Y   L    D R+ +A+ V A  RA  V  R R   A  GK               +   P GW  L  +    RGHLLG+QLGGNG N RN+V ++++ANS VM G+E+ +
Sbjct: 2836 RFVDESFTRSLKDLGLSEKELRRFFKHFPGFDQQGELSEEFKGLLAEWNNQPGNCMKGGGKSWVYYHPL----DSRD-RATGVTACLRADAVDYRGRGRKADPGKDTDIMGGDTTRGRGTDRSNPAGWQHLDGQRGWARGHLLGRQLGGNGRNRRNLVKMYNAANSDVMEGYESAV 3006          
The following BLAST results are available for this feature:
BLAST of Ggra9401.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. TRM72054 TaxID=2870562 RepID=UPI001C8B73EB2.570e-632.39DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Enterococcus timonensis TaxID=1852364 RepID=UPI0008DA6C3A4.410e-630.77DNA/RNA non-specific endonuclease n=1 Tax=Enteroco... [more]
A0A6G8AR964.510e-628.42DNA-entry nuclease n=1 Tax=Vagococcus hydrophili T... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces spinoverrucosus TaxID=284043 RepID=UPI001E2A75A85.850e-632.39DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DNRLRE domain-containing protein n=3 Tax=Streptomyces TaxID=1883 RepID=UPI001489239B7.540e-632.39DNRLRE domain-containing protein n=3 Tax=Streptomy... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044929DNA/RNA non-specific endonuclease superfamilyGENE3D3.40.570.10Extracellular Endonuclease, subunit Acoord: 108..258
e-value: 6.9E-13
score: 50.3
IPR044927Type VII secretion system protein EssD-likePFAMPF13930Endonuclea_NS_2coord: 113..224
e-value: 6.6E-8
score: 32.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..356
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 336..356
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 11..24
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 29..356
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 25..28
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..10
NoneNo IPR availableTMHMMTMhelixcoord: 9..31

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:358789..359859 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9401.t1Ggra9401.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 358789..359859 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9401.t1 ID=Ggra9401.t1|Name=Ggra9401.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MFAGVLQKISICLALAVLYTAIVLYAAAVVTKVKHRDLDESQTRVNNVRS
LFQPTLVPPKSNDGFERRYPVSHDDYRYQECVERNGVTLAYGPVLNPAAD
FREWKASSVQATFRAVKSRARENLAGCGKMAYNYDRPPGWLGPRTKCTRG
HLLGKQLGGNGLNTRNIVMLFSSANSPVMSGWENIIAEVREKLMTNGSRN
AVLDYVVKAEYCAGRETPAAIWMETWFAASENAERSEWLKILVPNEQNVR
AYMYMDNSLRLGFGQLEINPNHNVITSERLARSSRPERDGDNWKKYPQRL
VELAYRGTKRTRKWRKRQELTMVAVQSLTEDSPCKWKLPTSARKDAQTRH
GNEKAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044929DNA/RNA_non-sp_Endonuclease_sf
IPR044927Endonuclea_NS_2