Ggra9360.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9360.t1
Unique NameGgra9360.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:90122..90787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173027.Mic7113_6251
PFAMsHis_Phos_1
Max annot lvl1117|Cyanobacteria
Evalue1.43e-50
EggNOG OGsCOG0406@1|root,COG0406@2|Bacteria,1G0NK@1117|Cyanobacteria,1H7MJ@1150|Oscillatoriales
Descriptionphosphoglycerate mutase
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9360Ggra9360Gracilaria gracilis GNS1m malegenetig00000883_pilon 90122..90787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9360.t1.start1Ggra9360.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 90122..90124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9360.t1.CDS1Ggra9360.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 90122..90787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9360.t1.exon1Ggra9360.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 90122..90787 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9360.t1.stop1Ggra9360.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 90785..90787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9360.t1Ggra9360.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 90122..90787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9360.t1 ID=Ggra9360.t1|Name=Ggra9360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=222bp
MLASTVYIARHGERIDHIDKTWKETAERPHDPFLTERGIQQAHFLGKHLA
TKDLTHIFVSPFYRTVQTANEVSKVTGLPIKLEPGLSEWLHPGWFPKKPT
MVPVTALKKEFPSIDVTHEPVVFPDYPETRERVIQRSRQIAQRLAAKFSG
NLLLVAHGMTCEFTARGITDAGPRPYISYCSLQTCVVNEEKDKYLVHGPD
EADVSFMPETIRPEVKTGVYQ*
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spliced messenger RNA

>Ggra9360.t1 ID=Ggra9360.t1|Name=Ggra9360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000883_pilon:90122..90787+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCTTCAACAGTTTATATCGCACGACATGGCGAGAGAATCGATCA
CATTGACAAAACATGGAAGGAAACCGCCGAGCGACCACACGATCCGTTTC
TCACCGAAAGAGGAATTCAACAAGCTCACTTCCTTGGAAAGCATCTCGCT
ACCAAAGACCTGACACACATTTTTGTAAGCCCATTCTACCGAACCGTGCA
AACCGCAAACGAAGTATCAAAAGTCACAGGGTTGCCAATCAAGCTTGAGC
CGGGTCTCAGTGAATGGTTGCATCCAGGATGGTTTCCAAAGAAACCAACT
ATGGTGCCTGTGACAGCTCTTAAGAAAGAGTTTCCTTCCATCGACGTTAC
GCACGAACCCGTTGTTTTTCCCGATTATCCTGAAACGAGAGAGCGCGTCA
TTCAGAGATCAAGGCAGATTGCGCAACGTTTAGCGGCCAAGTTCTCGGGC
AACTTATTACTCGTGGCACATGGTATGACTTGCGAGTTCACTGCTCGTGG
TATTACTGATGCTGGACCGCGTCCGTACATTTCCTACTGTTCTTTGCAAA
CGTGTGTTGTCAATGAAGAGAAGGACAAGTATCTTGTTCACGGCCCAGAT
GAAGCTGATGTTAGCTTCATGCCGGAAACCATCCGCCCTGAGGTCAAGAC
TGGTGTTTATCAGTAG
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protein sequence of Ggra9360.t1

>Ggra9360.t1 ID=Ggra9360.t1|Name=Ggra9360.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=222bp
MLASTVYIARHGERIDHIDKTWKETAERPHDPFLTERGIQQAHFLGKHLA
TKDLTHIFVSPFYRTVQTANEVSKVTGLPIKLEPGLSEWLHPGWFPKKPT
MVPVTALKKEFPSIDVTHEPVVFPDYPETRERVIQRSRQIAQRLAAKFSG
NLLLVAHGMTCEFTARGITDAGPRPYISYCSLQTCVVNEEKDKYLVHGPD
EADVSFMPETIRPEVKTGVYQ*
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mRNA from alignment at tig00000883_pilon:90122..90787+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9360.t1 ID=Ggra9360.t1|Name=Ggra9360.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00000883_pilon:90122..90787+ (Gracilaria gracilis GNS1m male)
ATGCTCGCTTCAACAGTTTATATCGCACGACATGGCGAGAGAATCGATCA
CATTGACAAAACATGGAAGGAAACCGCCGAGCGACCACACGATCCGTTTC
TCACCGAAAGAGGAATTCAACAAGCTCACTTCCTTGGAAAGCATCTCGCT
ACCAAAGACCTGACACACATTTTTGTAAGCCCATTCTACCGAACCGTGCA
AACCGCAAACGAAGTATCAAAAGTCACAGGGTTGCCAATCAAGCTTGAGC
CGGGTCTCAGTGAATGGTTGCATCCAGGATGGTTTCCAAAGAAACCAACT
ATGGTGCCTGTGACAGCTCTTAAGAAAGAGTTTCCTTCCATCGACGTTAC
GCACGAACCCGTTGTTTTTCCCGATTATCCTGAAACGAGAGAGCGCGTCA
TTCAGAGATCAAGGCAGATTGCGCAACGTTTAGCGGCCAAGTTCTCGGGC
AACTTATTACTCGTGGCACATGGTATGACTTGCGAGTTCACTGCTCGTGG
TATTACTGATGCTGGACCGCGTCCGTACATTTCCTACTGTTCTTTGCAAA
CGTGTGTTGTCAATGAAGAGAAGGACAAGTATCTTGTTCACGGCCCAGAT
GAAGCTGATGTTAGCTTCATGCCGGAAACCATCCGCCCTGAGGTCAAGAC
TGGTGTTTATCAGTAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:90122..90787+

>Ggra9360.t1 ID=Ggra9360.t1|Name=Ggra9360.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00000883_pilon:90122..90787+ (Gracilaria gracilis GNS1m male)
ATGCTCGCTTCAACAGTTTATATCGCACGACATGGCGAGAGAATCGATCA
CATTGACAAAACATGGAAGGAAACCGCCGAGCGACCACACGATCCGTTTC
TCACCGAAAGAGGAATTCAACAAGCTCACTTCCTTGGAAAGCATCTCGCT
ACCAAAGACCTGACACACATTTTTGTAAGCCCATTCTACCGAACCGTGCA
AACCGCAAACGAAGTATCAAAAGTCACAGGGTTGCCAATCAAGCTTGAGC
CGGGTCTCAGTGAATGGTTGCATCCAGGATGGTTTCCAAAGAAACCAACT
ATGGTGCCTGTGACAGCTCTTAAGAAAGAGTTTCCTTCCATCGACGTTAC
GCACGAACCCGTTGTTTTTCCCGATTATCCTGAAACGAGAGAGCGCGTCA
TTCAGAGATCAAGGCAGATTGCGCAACGTTTAGCGGCCAAGTTCTCGGGC
AACTTATTACTCGTGGCACATGGTATGACTTGCGAGTTCACTGCTCGTGG
TATTACTGATGCTGGACCGCGTCCGTACATTTCCTACTGTTCTTTGCAAA
CGTGTGTTGTCAATGAAGAGAAGGACAAGTATCTTGTTCACGGCCCAGAT
GAAGCTGATGTTAGCTTCATGCCGGAAACCATCCGCCCTGAGGTCAAGAC
TGGTGTTTATCAGTAG
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