Ggra9397.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9397.t1
Unique NameGgra9397.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length234
Homology
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A2V3ISQ1 (50S ribosomal protein L24, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISQ1_9FLOR)

HSP 1 Score: 372 bits (955), Expect = 6.590e-129
Identity = 188/232 (81.03%), Postives = 204/232 (87.93%), Query Frame = 0
Query:    1 MLGLSRLAFRRPKVPIPSPPAQQIRNSSKKSLARGMPLRRGGPIPGPRFGGKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKFETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKDTPPTVALHRSYMDEEGLYDQYAGFKALVDKSM 232
            ML L   A RRP++P     ++Q R +SKKSLARGM LR GG IPGPRFGGKLSVDM HR+ESMIDAIR PTPVTNP+KRWRILRGDFVEVISGPEKGKRGRVIEVVRASNRVVVEGVGLV+KK   PGG+ K FETESPIYVSRVAV+CPQTD PTRVTFAF+EDGTKVRVSK+SG IIPRPEILK+RR PHPEDSPKDT PTV LHRSY DEEGLY+QYAGFKALVDK++
Sbjct:    1 MLRLPHYAARRPRIPAAPTFSRQTRAASKKSLARGMRLRGGGAIPGPRFGGKLSVDMTHRSESMIDAIRTPTPVTNPLKRWRILRGDFVEVISGPEKGKRGRVIEVVRASNRVVVEGVGLVRKKMLQPGGFEKVFETESPIYVSRVAVVCPQTDQPTRVTFAFLEDGTKVRVSKKSGVIIPRPEILKQRRNPHPEDSPKDTAPTVVLHRSYNDEEGLYEQYAGFKALVDKAI 232          
BLAST of Ggra9397.t1 vs. uniprot
Match: R7QLJ6 (50S ribosomal protein L24, chloroplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLJ6_CHOCR)

HSP 1 Score: 276 bits (707), Expect = 2.940e-91
Identity = 137/204 (67.16%), Postives = 170/204 (83.33%), Query Frame = 0
Query:   27 SSKKSLARGMPLRRGGPIPGPRFGGKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKK-FETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKDTPPTVALHRSYMDEEGLYDQYAGFKALVD 229
            +++  LA G  +RRGG +PG R+GGK S +M HR+ES++++IR P PV NPIK+WR+LRGD V+VISGPE+GKRGRV+EVVRA+NRVVVEGV LV K AP P    KK   TE+PIYVSRVAV+CP TD PTRV++ F+EDGTKVRVSK +GA+IPRP+ILK+RRK  P+DSPKDT PTVAL R++ DE+GLYD+YAGFKAL+D
Sbjct:   21 ANRAHLAVGKRVRRGGGVPGARYGGKPSTEMAHRSESVLESIRTPKPVFNPIKKWRVLRGDLVQVISGPERGKRGRVLEVVRAANRVVVEGVQLVNKYAPQPDSERKKKVRTEAPIYVSRVAVVCPVTDKPTRVSYRFLEDGTKVRVSK-AGAVIPRPDILKRRRKERPDDSPKDTAPTVALERTFEDEDGLYDKYAGFKALID 223          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A7S1TD77 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD77_9RHOD)

HSP 1 Score: 177 bits (449), Expect = 1.860e-52
Identity = 94/175 (53.71%), Postives = 120/175 (68.57%), Query Frame = 0
Query:   29 KKSLARGMPLRRGGPIPGPRFGGKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEK-GKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKK-FETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKDT 201
            ++  +RG+P R  GP PGPR GG  S +M +R+ES +++IR P P   P  RWRILRGD V+V+ G +  G++GRV+EV+R SNRVV+ GVG+V K      G  KK   TE PI+VS VA++CPQT  PT+VT  + EDGT+VRV+K SGAIIPRP IL KRR   P    KDT
Sbjct:   29 RRVRSRGIPRRGAGPRPGPRIGGVKSSEMRYRSESALESIRRPKPAPEPQTRWRILRGDLVQVVQGQKDVGQQGRVLEVIRLSNRVVIAGVGMVTKYVTTAAGDKKKPMVTEGPIHVSNVALVCPQTGQPTKVTMRYAEDGTRVRVAKVSGAIIPRPAILTKRRVERPPAGLKDT 203          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A7J7IG90 (Ig-like domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IG90_9RHOD)

HSP 1 Score: 165 bits (417), Expect = 3.950e-47
Identity = 91/178 (51.12%), Postives = 120/178 (67.42%), Query Frame = 0
Query:   29 KKSLARGMPLRRGGPIPGPRFGGKLSVDMNHRTESMIDAIRIPTPVTN----PIKRWRILRGDFVEVISGP--EKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKFE------TESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHP 194
            ++ LAR  PLR     P  R  G  S +M  R ES++D+IR P P       P ++W+ILRGD V+VI GP  + GK+GR++EV+R +NRVVVEGV  VKK  PAP   +   +      TE P++VS VA++CP+T LPTRV   ++EDGT+VR+SKRSGAIIPRPEIL++RR P P
Sbjct:   43 RRGLARKQPLR-----PPRRSVGVPSAEMRGRFESVLDSIRTPRPPKREEPIPPRQWKILRGDLVQVIGGPPADIGKKGRILEVIRKNNRVVVEGVNYVKKYVPAPSATVDASQPKRVLITEGPLHVSNVAIVCPETGLPTRVGIRWLEDGTRVRISKRSGAIIPRPEILRQRRTPRP 215          
BLAST of Ggra9397.t1 vs. uniprot
Match: M1V7P3 (Mitochondrial ribosomal protein L24 n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V7P3_CYAM1)

HSP 1 Score: 164 bits (415), Expect = 8.120e-47
Identity = 93/169 (55.03%), Postives = 120/169 (71.01%), Query Frame = 0
Query:   43 PIPGPRFG-GKLSVDMNHRTESMIDAIRIP------TPVTNPIKRWRILRGDFVEVISGP--EKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAP-----GGYLKK-FETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPED 196
            P+  PR   G  S +M  R ESM+D+IR P      +P+  P ++WR+LRGD+V+VI GP  + GK+GRV+EV+R SNRVVVEGV  VKK  PAP     GG  K+   TE P++VS VA++CP+T LPTRV   ++EDGT+VR+SKRSGAIIPRPEIL++RR P P D
Sbjct:   53 PLHPPRRNVGVPSAEMRGRFESMLDSIRTPRSPKRESPI--PPRKWRVLRGDYVQVIGGPPGDIGKKGRVLEVIRRSNRVVVEGVNYVKKFVPAPSATVGGGQRKRVILTEGPLHVSNVAIVCPETGLPTRVGIRWLEDGTRVRISKRSGAIIPRPEILRQRRTPRPFD 219          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A7V5I8I2 (50S ribosomal protein L24 n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5I8I2_9BACT)

HSP 1 Score: 151 bits (382), Expect = 8.450e-43
Identity = 83/147 (56.46%), Postives = 108/147 (73.47%), Query Frame = 0
Query:   64 MIDAIRIP------TPVTNPIKRWRILRGDFVEVISGP--EKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAP-----GGYLKK-FETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPED 196
            M+D+IR P      +P+  P ++WR+LRGD+V+VI G   + GK+GRV+EV+R SNRVVVEGV  VKK  PAP     GG  K+   TE P++VS VA++CP+T LPTRV   ++EDGT+VR+SKRSGAIIPRPEIL++RR P P D
Sbjct:    1 MLDSIRTPRSPKRESPI--PPRKWRVLRGDYVQVIGGSPGDIGKKGRVLEVIRRSNRVVVEGVNYVKKFVPAPSATVGGGQRKRVILTEGPLHVSNVAIVCPETGLPTRVGIRWLEDGTRVRISKRSGAIIPRPEILRQRRTPRPFD 145          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A1X6NIQ0 (Uncharacterized protein (Fragment) n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NIQ0_PORUM)

HSP 1 Score: 151 bits (382), Expect = 1.430e-41
Identity = 93/199 (46.73%), Postives = 117/199 (58.79%), Query Frame = 0
Query:   38 LRRGGPIPGPR-FGGKLSVDMNHRTESMIDAIRIP-----TPVTNPIKRWRILRGDFVEVISGPEKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKFETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKP-HPEDSPKDTPPTVALHRSYMDEEGLYDQYAGFKALVD 229
            +R  G +PGP   GG  S +    +E+ I+AIR P          P +RW++LRGD VEVI+GP  G RGRV+ VVR +  VVV GV +   K     G   +  TE  I VS VAV+CP T  PT+V + ++EDGTKVRV+K SGA+IPRP     RR P    D   DTPP V + R+Y DEEGLY  Y  F AL +
Sbjct:   72 IRGAGAVPGPHPTGGVPSAEARSPSEAAIEAIRCPPRARGVGAARP-RRWKVLRGDTVEVINGPWVGGRGRVLHVVRRAEGVVVSGVAVTAHKVRDANGAETELRTEGVIPVSNVAVVCPTTGRPTKVRYGWLEDGTKVRVAKVSGAVIPRPPGG--RRVPLRATDGAMDTPPEVVVKRTYEDEEGLYGAYEEFLALCE 267          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A7S1TDG6 (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDG6_9RHOD)

HSP 1 Score: 139 bits (349), Expect = 3.000e-38
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 0
Query:   71 PTPVTNPIKRWRILRGDFVEVISGPEK-GKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKK-FETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKDT 201
            P P   P  RWRILRGD V+V+ G +  G++GRV+EV+R SNRVV+ GVG+V K      G  KK   TE PI+VS VA++CPQT  PT+VT  + EDGT+VRV+K SGAIIPRP IL KRR   P    KDT
Sbjct:    5 PKPAPEPQTRWRILRGDLVQVVQGQKDVGQQGRVLEVIRLSNRVVIAGVGMVTKYVTTAAGDKKKPMVTEGPIHVSNVALVCPQTGQPTKVTMRYAEDGTRVRVAKVSGAIIPRPAILTKRRVERPPAGLKDT 137          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A5J4YLF6 (Putative 39S ribosomal protein L24, mitochondrial n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLF6_PORPP)

HSP 1 Score: 130 bits (328), Expect = 9.790e-34
Identity = 83/204 (40.69%), Postives = 117/204 (57.35%), Query Frame = 0
Query:   23 QIRNSSKKSLARGMPLRRGGPIP-GPRFG----GKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEK--GKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKF-ETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKDTPPTVALHRSYM-DEEGL 217
            Q R S K       P+R GG      +FG    GK+S +M +R++S ++ IR P       K W++LRGDFV+V+    +    RG V+EVVR S+ VVV+GV   K +   P     K   TE PI + ++AV+ P    PT V F ++EDGT+VRV++ SGAIIP+PE+ KK+R   P    KDTP    + R+Y  D++GL
Sbjct:   10 QRRPSLKSGWRNSAPIRGGGATKLASQFGYENTGKMSTEMLYRSQSALEEIRRPPAAKVYHKSWKVLRGDFVQVVDPEHRDVSVRGMVLEVVRQSSCVVVQGVNFQKVRITDPETRRPKVVTTEGPIELDKIAVVDPIEKKPTEVDFEWLEDGTRVRVARLSGAIIPKPELCKKKRYERPVGGVKDTPVEAVIRRTYNPDDDGL 213          
BLAST of Ggra9397.t1 vs. uniprot
Match: A0A2I0X5R5 (50S ribosomal protein L24, chloroplastic n=2 Tax=Epidendroideae TaxID=158332 RepID=A0A2I0X5R5_9ASPA)

HSP 1 Score: 127 bits (320), Expect = 1.280e-33
Identity = 71/145 (48.97%), Postives = 96/145 (66.21%), Query Frame = 0
Query:   78 IKRWRILRGDFVEVISGPEKGKRGRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKK-FETESPIYVSRVAVICPQTDLPTRVTFAFMEDGTKVRVSK---RSGAIIPRPEILKKRRKPHP-EDSPKDTPPTVALHRSYMDEEGL 217
            I +W+ILRGD V +I G +KG+ G +  V+R+ NRV+VEG  LVKK      G+    F  E+P++VS V VI P T  P ++ + FMEDG+KVR+S+    SG++IPRPEILK RRKP P E  PKDTP  V L ++Y  + G+
Sbjct:   10 ITKWKILRGDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGQNLVKKHVKQGQGHEGGIFTVEAPLHVSNVQVIDPVTGRPCKIGYRFMEDGSKVRISRGREASGSVIPRPEILKMRRKPRPIEPGPKDTPIDVVLEKTYDAKVGI 154          
The following BLAST results are available for this feature:
BLAST of Ggra9397.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ISQ16.590e-12981.0350S ribosomal protein L24, chloroplastic n=1 Tax=G... [more]
R7QLJ62.940e-9167.1650S ribosomal protein L24, chloroplastic n=1 Tax=C... [more]
A0A7S1TD771.860e-5253.71Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7J7IG903.950e-4751.12Ig-like domain-containing protein n=1 Tax=Cyanidio... [more]
M1V7P38.120e-4755.03Mitochondrial ribosomal protein L24 n=1 Tax=Cyanid... [more]
A0A7V5I8I28.450e-4356.4650S ribosomal protein L24 n=1 Tax=bacterium TaxID=... [more]
A0A1X6NIQ01.430e-4146.73Uncharacterized protein (Fragment) n=1 Tax=Porphyr... [more]
A0A7S1TDG63.000e-3856.39Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A5J4YLF69.790e-3440.69Putative 39S ribosomal protein L24, mitochondrial ... [more]
A0A2I0X5R51.280e-3348.9750S ribosomal protein L24, chloroplastic n=2 Tax=E... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005824KOWSMARTSM00739kow_9coord: 82..109
e-value: 0.0019
score: 27.5
IPR005824KOWPFAMPF00467KOWcoord: 85..116
e-value: 2.1E-6
score: 27.5
IPR003256Ribosomal protein L24PFAMPF17136ribosomal_L24coord: 134..180
e-value: 4.4E-14
score: 52.6
IPR003256Ribosomal protein L24TIGRFAMTIGR01079TIGR01079coord: 82..180
e-value: 2.8E-25
score: 86.7
IPR003256Ribosomal protein L24PANTHERPTHR12903MITOCHONDRIAL RIBOSOMAL PROTEIN L24coord: 75..212
IPR003256Ribosomal protein L24HAMAPMF_01326_BRibosomal_L24_Bcoord: 81..174
score: 15.741762
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 73..178
e-value: 3.0E-28
score: 100.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..44
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..198
NoneNo IPR availablePANTHERPTHR12903:SF039S RIBOSOMAL PROTEIN L24, MITOCHONDRIALcoord: 75..212
IPR005825Ribosomal protein L24/L26, conserved sitePROSITEPS01108RIBOSOMAL_L24coord: 86..103
IPR041988Ribosomal protein L26/L24, KOW domainCDDcd06089KOW_RPL26coord: 86..148
e-value: 1.05388E-15
score: 67.1546
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 75..179

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:310702..311403 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9397.t1Ggra9397.t1Gracilaria gracilis GNS1m malemRNAtig00000883_pilon 310702..311403 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9397.t1 ID=Ggra9397.t1|Name=Ggra9397.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=234bp
MLGLSRLAFRRPKVPIPSPPAQQIRNSSKKSLARGMPLRRGGPIPGPRFG
GKLSVDMNHRTESMIDAIRIPTPVTNPIKRWRILRGDFVEVISGPEKGKR
GRVIEVVRASNRVVVEGVGLVKKKAPAPGGYLKKFETESPIYVSRVAVIC
PQTDLPTRVTFAFMEDGTKVRVSKRSGAIIPRPEILKKRRKPHPEDSPKD
TPPTVALHRSYMDEEGLYDQYAGFKALVDKSMQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR003256Ribosomal_L24
IPR014722Rib_L2_dom2
IPR005825Ribosomal_L24/26_CS
IPR041988KOW_RPL26/RPL24
IPR008991Translation_prot_SH3-like_sf