Ggra9351.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9351.t1
Unique NameGgra9351.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length265
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:57893..58833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9351Ggra9351Gracilaria gracilis GNS1m malegenetig00000883_pilon 57893..58833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9351.t1Ggra9351.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 57893..58833 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9351.t1.stop1Ggra9351.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 57893..57895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9351.t1.CDS1Ggra9351.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 57893..58072 -
Ggra9351.t1.CDS2Ggra9351.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 58147..58320 -
Ggra9351.t1.CDS3Ggra9351.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000883_pilon 58393..58833 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9351.t1.exon1Ggra9351.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 57893..58072 -
Ggra9351.t1.exon2Ggra9351.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 58147..58320 -
Ggra9351.t1.exon3Ggra9351.t1.exon3Gracilaria gracilis GNS1m maleexontig00000883_pilon 58393..58833 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9351.t1.intron1Ggra9351.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 58073..58146 -
Ggra9351.t1.intron2Ggra9351.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000883_pilon 58321..58392 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9351.t1.start1Ggra9351.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 58831..58833 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9351.t1 ID=Ggra9351.t1|Name=Ggra9351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=265bp
MQPLGSMDISSILNNAKLVNTGENSVLGGPHYDSLRKTPLSPFSSVSGWN
RNNSSSNSTSPSLADFTASEVREEGTQPMQPWVPTFSAPKSCSQTRVRVG
VCRPKRRSLEVSSNNVQRLEGFSKRRKCESCMKTFYSSTHLDIHEETVHK
GIKRHKCSHCSSSFGQSGTLTRHILTVHEKRRDHECKLPNCRKRFSSAWS
LKVHVQNVHFKLRPYGCSVPSCSRAFGNLWNRRKHERNVHGIQRDSPSAT
INNVSANRQGGINS*
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spliced messenger RNA

>Ggra9351.t1 ID=Ggra9351.t1|Name=Ggra9351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=795bp|location=Sequence derived from alignment at tig00000883_pilon:57893..58833- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCATTGGGAAGCATGGATATATCTAGCATTCTCAATAACGCCAA
ACTTGTTAACACTGGTGAGAATTCAGTGCTAGGCGGGCCACACTACGACT
CACTACGCAAGACGCCTCTGTCTCCATTTTCGAGCGTCTCGGGTTGGAAT
CGGAACAATTCTTCCTCAAATTCAACATCTCCGTCGCTGGCTGACTTCAC
GGCATCAGAAGTGCGTGAAGAAGGCACTCAGCCAATGCAGCCGTGGGTGC
CTACTTTTTCTGCGCCTAAGTCGTGTTCTCAAACTCGAGTGAGAGTTGGA
GTCTGTCGGCCGAAGAGAAGAAGCTTGGAGGTTTCTTCCAACAATGTACA
GAGATTGGAAGGTTTCTCGAAACGAAGAAAGTGTGAATCCTGTATGAAAA
CCTTCTACTCGAGTACGCATTTGGACATTCATGAAGAAACAGTTCACAAG
GGAATCAAAAGACATAAATGTTCTCACTGTAGCTCTTCATTTGGACAGAG
CGGAACATTAACACGCCACATTCTGACAGTACACGAAAAGCGACGCGATC
ACGAATGCAAGCTACCCAATTGTCGAAAACGATTCAGTTCAGCCTGGAGT
CTAAAAGTTCATGTGCAAAACGTGCATTTTAAGCTGAGGCCGTATGGCTG
TAGCGTACCCAGCTGCAGCCGCGCGTTTGGAAACCTCTGGAATCGGCGAA
AGCATGAACGGAATGTGCATGGGATACAGCGAGACAGCCCGTCTGCGACC
ATCAACAACGTATCTGCCAACCGACAGGGCGGCATAAATAGTTAA
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protein sequence of Ggra9351.t1

>Ggra9351.t1 ID=Ggra9351.t1|Name=Ggra9351.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=265bp
MQPLGSMDISSILNNAKLVNTGENSVLGGPHYDSLRKTPLSPFSSVSGWN
RNNSSSNSTSPSLADFTASEVREEGTQPMQPWVPTFSAPKSCSQTRVRVG
VCRPKRRSLEVSSNNVQRLEGFSKRRKCESCMKTFYSSTHLDIHEETVHK
GIKRHKCSHCSSSFGQSGTLTRHILTVHEKRRDHECKLPNCRKRFSSAWS
LKVHVQNVHFKLRPYGCSVPSCSRAFGNLWNRRKHERNVHGIQRDSPSAT
INNVSANRQGGINS*
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mRNA from alignment at tig00000883_pilon:57893..58833-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9351.t1 ID=Ggra9351.t1|Name=Ggra9351.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=941bp|location=Sequence derived from alignment at tig00000883_pilon:57893..58833- (Gracilaria gracilis GNS1m male)
ATGCAACCATTGGGAAGCATGGATATATCTAGCATTCTCAATAACGCCAA
ACTTGTTAACACTGGTGAGAATTCAGTGCTAGGCGGGCCACACTACGACT
CACTACGCAAGACGCCTCTGTCTCCATTTTCGAGCGTCTCGGGTTGGAAT
CGGAACAATTCTTCCTCAAATTCAACATCTCCGTCGCTGGCTGACTTCAC
GGCATCAGAAGTGCGTGAAGAAGGCACTCAGCCAATGCAGCCGTGGGTGC
CTACTTTTTCTGCGCCTAAGTCGTGTTCTCAAACTCGAGTGAGAGTTGGA
GTCTGTCGGCCGAAGAGAAGAAGCTTGGAGGTTTCTTCCAACAATGTACA
GAGATTGGAAGGTTTCTCGAAACGAAGAAAGTGTGAATCCTGTATGAAAA
CCTTCTACTCGAGTACGCATTTGGACATTCATGAAGAAACAGTACGTGTC
TTTATTTTCAACATCCATGTGGCGAGAACTAACCAACCGTTTTGTTCGCT
GTGTCTCCGACAGGTTCACAAGGGAATCAAAAGACATAAATGTTCTCACT
GTAGCTCTTCATTTGGACAGAGCGGAACATTAACACGCCACATTCTGACA
GTACACGAAAAGCGACGCGATCACGAATGCAAGCTACCCAATTGTCGAAA
ACGATTCAGTTCAGCCTGGAGTCTAAAAGTTCATGTGGTAAGTTGTAAGC
AAACGTGTCTAGCACAAGAGGTGATGAGTATCTAACGCCAAAAACTGTTG
ACATGAAACAGCAAAACGTGCATTTTAAGCTGAGGCCGTATGGCTGTAGC
GTACCCAGCTGCAGCCGCGCGTTTGGAAACCTCTGGAATCGGCGAAAGCA
TGAACGGAATGTGCATGGGATACAGCGAGACAGCCCGTCTGCGACCATCA
ACAACGTATCTGCCAACCGACAGGGCGGCATAAATAGTTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:57893..58833-

>Ggra9351.t1 ID=Ggra9351.t1|Name=Ggra9351.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=795bp|location=Sequence derived from alignment at tig00000883_pilon:57893..58833- (Gracilaria gracilis GNS1m male)
ATGCAACCATTGGGAAGCATGGATATATCTAGCATTCTCAATAACGCCAA
ACTTGTTAACACTGGTGAGAATTCAGTGCTAGGCGGGCCACACTACGACT
CACTACGCAAGACGCCTCTGTCTCCATTTTCGAGCGTCTCGGGTTGGAAT
CGGAACAATTCTTCCTCAAATTCAACATCTCCGTCGCTGGCTGACTTCAC
GGCATCAGAAGTGCGTGAAGAAGGCACTCAGCCAATGCAGCCGTGGGTGC
CTACTTTTTCTGCGCCTAAGTCGTGTTCTCAAACTCGAGTGAGAGTTGGA
GTCTGTCGGCCGAAGAGAAGAAGCTTGGAGGTTTCTTCCAACAATGTACA
GAGATTGGAAGGTTTCTCGAAACGAAGAAAGTGTGAATCCTGTATGAAAA
CCTTCTACTCGAGTACGCATTTGGACATTCATGAAGAAACAGTTCACAAG
GGAATCAAAAGACATAAATGTTCTCACTGTAGCTCTTCATTTGGACAGAG
CGGAACATTAACACGCCACATTCTGACAGTACACGAAAAGCGACGCGATC
ACGAATGCAAGCTACCCAATTGTCGAAAACGATTCAGTTCAGCCTGGAGT
CTAAAAGTTCATGTGCAAAACGTGCATTTTAAGCTGAGGCCGTATGGCTG
TAGCGTACCCAGCTGCAGCCGCGCGTTTGGAAACCTCTGGAATCGGCGAA
AGCATGAACGGAATGTGCATGGGATACAGCGAGACAGCCCGTCTGCGACC
ATCAACAACGTATCTGCCAACCGACAGGGCGGCATAAATAGTTAA
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