Ggra9367.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9367.t1
Unique NameGgra9367.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:106820..107848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708690.1
PFAMsPAP_fibrillin
Max annot lvl2759|Eukaryota
Evalue5.63e-54
EggNOG OGs28JPH@1|root,2QS2T@2759|Eukaryota
Descriptionresponse to acid chemical
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9367Ggra9367Gracilaria gracilis GNS1m malegenetig00000883_pilon 106820..107848 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9367.t1.stop1Ggra9367.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 106820..106822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9367.t1.CDS1Ggra9367.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 106820..107848 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9367.t1.exon1Ggra9367.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 106820..107848 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9367.t1.start1Ggra9367.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 107846..107848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9367.t1Ggra9367.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 106820..107848 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9367.t1 ID=Ggra9367.t1|Name=Ggra9367.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MTDRQLRFGAQPAIGDAPPPRQLPNRQPAHRASRRQSAQSRDDHRDGVPY
PPRAVHLSRFSPCSSRPIMASLTFAKSTLVRLPTNPSLSSFTSRTAPTRH
AVPRRARPLNLRMEVGDEAEDEAPSDVSVPAGDAVKSMIPGMDDAKRTAL
VSKLLQYAAITDRGMSASEMQRAAVDDIVMTLEELNPNPQPVETELIDGE
WNLVYTTAKLFQTNPFLMAAVTPLLQVGQIRQKITVDDGKLTTEAEVTAF
PVTSWTVKTSSRITPVGAERLEITVESTDVTGGKIADRIDLGGISFNVPV
EQIFSRIRNAAPESYIDTYYLDENLRISRSKQGKLFIYTRLD*
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spliced messenger RNA

>Ggra9367.t1 ID=Ggra9367.t1|Name=Ggra9367.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000883_pilon:106820..107848- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGATCGTCAGCTGCGGTTTGGCGCTCAACCCGCCATTGGCGATGC
ACCTCCGCCCCGTCAACTCCCGAACCGTCAACCCGCTCACCGCGCGTCCC
GCCGCCAATCCGCTCAGTCGAGAGACGACCACCGCGACGGTGTACCCTAC
CCGCCTCGCGCCGTCCACCTTTCACGCTTCTCTCCTTGTTCATCGCGCCC
CATAATGGCCTCGCTCACGTTCGCTAAGTCGACGCTGGTGCGTTTGCCCA
CCAACCCGTCGCTGTCATCGTTCACGTCGCGAACCGCGCCTACCCGCCAT
GCCGTGCCTCGAAGAGCCCGTCCGCTCAATCTGCGCATGGAGGTCGGCGA
TGAGGCTGAAGACGAAGCGCCGTCCGACGTCTCCGTGCCTGCAGGCGACG
CGGTGAAATCCATGATACCCGGCATGGATGACGCGAAGCGAACAGCGCTC
GTTTCAAAACTGCTGCAGTACGCGGCCATAACTGATCGCGGTATGTCTGC
GTCTGAGATGCAACGCGCCGCCGTCGATGACATTGTCATGACGTTGGAGG
AACTCAATCCCAACCCACAGCCGGTTGAAACGGAGCTCATTGACGGTGAA
TGGAACCTTGTTTACACCACTGCCAAGCTGTTTCAGACCAACCCGTTCCT
CATGGCTGCTGTCACCCCGCTTCTTCAAGTGGGGCAGATTCGTCAGAAGA
TCACCGTCGACGACGGTAAGCTTACCACTGAAGCGGAGGTCACAGCGTTT
CCAGTCACCTCATGGACTGTCAAGACCTCGAGCCGCATCACTCCTGTAGG
CGCGGAGCGTCTCGAAATCACTGTCGAGTCTACTGATGTGACGGGTGGTA
AGATTGCTGATCGTATCGACCTTGGCGGCATCTCCTTTAATGTTCCGGTG
GAACAGATTTTCTCTCGTATCAGGAATGCAGCACCGGAATCGTATATCGA
CACGTACTACCTAGATGAGAACCTTCGTATTTCGAGGTCGAAGCAAGGCA
AGCTTTTTATTTACACACGACTAGACTAA
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protein sequence of Ggra9367.t1

>Ggra9367.t1 ID=Ggra9367.t1|Name=Ggra9367.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MTDRQLRFGAQPAIGDAPPPRQLPNRQPAHRASRRQSAQSRDDHRDGVPY
PPRAVHLSRFSPCSSRPIMASLTFAKSTLVRLPTNPSLSSFTSRTAPTRH
AVPRRARPLNLRMEVGDEAEDEAPSDVSVPAGDAVKSMIPGMDDAKRTAL
VSKLLQYAAITDRGMSASEMQRAAVDDIVMTLEELNPNPQPVETELIDGE
WNLVYTTAKLFQTNPFLMAAVTPLLQVGQIRQKITVDDGKLTTEAEVTAF
PVTSWTVKTSSRITPVGAERLEITVESTDVTGGKIADRIDLGGISFNVPV
EQIFSRIRNAAPESYIDTYYLDENLRISRSKQGKLFIYTRLD*
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mRNA from alignment at tig00000883_pilon:106820..107848-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9367.t1 ID=Ggra9367.t1|Name=Ggra9367.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000883_pilon:106820..107848- (Gracilaria gracilis GNS1m male)
ATGACAGATCGTCAGCTGCGGTTTGGCGCTCAACCCGCCATTGGCGATGC
ACCTCCGCCCCGTCAACTCCCGAACCGTCAACCCGCTCACCGCGCGTCCC
GCCGCCAATCCGCTCAGTCGAGAGACGACCACCGCGACGGTGTACCCTAC
CCGCCTCGCGCCGTCCACCTTTCACGCTTCTCTCCTTGTTCATCGCGCCC
CATAATGGCCTCGCTCACGTTCGCTAAGTCGACGCTGGTGCGTTTGCCCA
CCAACCCGTCGCTGTCATCGTTCACGTCGCGAACCGCGCCTACCCGCCAT
GCCGTGCCTCGAAGAGCCCGTCCGCTCAATCTGCGCATGGAGGTCGGCGA
TGAGGCTGAAGACGAAGCGCCGTCCGACGTCTCCGTGCCTGCAGGCGACG
CGGTGAAATCCATGATACCCGGCATGGATGACGCGAAGCGAACAGCGCTC
GTTTCAAAACTGCTGCAGTACGCGGCCATAACTGATCGCGGTATGTCTGC
GTCTGAGATGCAACGCGCCGCCGTCGATGACATTGTCATGACGTTGGAGG
AACTCAATCCCAACCCACAGCCGGTTGAAACGGAGCTCATTGACGGTGAA
TGGAACCTTGTTTACACCACTGCCAAGCTGTTTCAGACCAACCCGTTCCT
CATGGCTGCTGTCACCCCGCTTCTTCAAGTGGGGCAGATTCGTCAGAAGA
TCACCGTCGACGACGGTAAGCTTACCACTGAAGCGGAGGTCACAGCGTTT
CCAGTCACCTCATGGACTGTCAAGACCTCGAGCCGCATCACTCCTGTAGG
CGCGGAGCGTCTCGAAATCACTGTCGAGTCTACTGATGTGACGGGTGGTA
AGATTGCTGATCGTATCGACCTTGGCGGCATCTCCTTTAATGTTCCGGTG
GAACAGATTTTCTCTCGTATCAGGAATGCAGCACCGGAATCGTATATCGA
CACGTACTACCTAGATGAGAACCTTCGTATTTCGAGGTCGAAGCAAGGCA
AGCTTTTTATTTACACACGACTAGACTAA
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Coding sequence (CDS) from alignment at tig00000883_pilon:106820..107848-

>Ggra9367.t1 ID=Ggra9367.t1|Name=Ggra9367.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000883_pilon:106820..107848- (Gracilaria gracilis GNS1m male)
ATGACAGATCGTCAGCTGCGGTTTGGCGCTCAACCCGCCATTGGCGATGC
ACCTCCGCCCCGTCAACTCCCGAACCGTCAACCCGCTCACCGCGCGTCCC
GCCGCCAATCCGCTCAGTCGAGAGACGACCACCGCGACGGTGTACCCTAC
CCGCCTCGCGCCGTCCACCTTTCACGCTTCTCTCCTTGTTCATCGCGCCC
CATAATGGCCTCGCTCACGTTCGCTAAGTCGACGCTGGTGCGTTTGCCCA
CCAACCCGTCGCTGTCATCGTTCACGTCGCGAACCGCGCCTACCCGCCAT
GCCGTGCCTCGAAGAGCCCGTCCGCTCAATCTGCGCATGGAGGTCGGCGA
TGAGGCTGAAGACGAAGCGCCGTCCGACGTCTCCGTGCCTGCAGGCGACG
CGGTGAAATCCATGATACCCGGCATGGATGACGCGAAGCGAACAGCGCTC
GTTTCAAAACTGCTGCAGTACGCGGCCATAACTGATCGCGGTATGTCTGC
GTCTGAGATGCAACGCGCCGCCGTCGATGACATTGTCATGACGTTGGAGG
AACTCAATCCCAACCCACAGCCGGTTGAAACGGAGCTCATTGACGGTGAA
TGGAACCTTGTTTACACCACTGCCAAGCTGTTTCAGACCAACCCGTTCCT
CATGGCTGCTGTCACCCCGCTTCTTCAAGTGGGGCAGATTCGTCAGAAGA
TCACCGTCGACGACGGTAAGCTTACCACTGAAGCGGAGGTCACAGCGTTT
CCAGTCACCTCATGGACTGTCAAGACCTCGAGCCGCATCACTCCTGTAGG
CGCGGAGCGTCTCGAAATCACTGTCGAGTCTACTGATGTGACGGGTGGTA
AGATTGCTGATCGTATCGACCTTGGCGGCATCTCCTTTAATGTTCCGGTG
GAACAGATTTTCTCTCGTATCAGGAATGCAGCACCGGAATCGTATATCGA
CACGTACTACCTAGATGAGAACCTTCGTATTTCGAGGTCGAAGCAAGGCA
AGCTTTTTATTTACACACGACTAGACTAA
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