Ggra9348.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9348.t1
Unique NameGgra9348.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:50809..51972 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7G3C2
PFAMsWD40
Max annot lvl2759|Eukaryota
Evalue3.86e-16
EggNOG OGsKOG0274@1|root,KOG0274@2759|Eukaryota
DescriptionSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9348Ggra9348Gracilaria gracilis GNS1m malegenetig00000883_pilon 50809..51972 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9348.t1.start1Ggra9348.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 50809..50811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9348.t1.CDS1Ggra9348.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 50809..51972 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9348.t1.exon1Ggra9348.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 50809..51972 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9348.t1.stop1Ggra9348.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 51970..51972 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9348.t1Ggra9348.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 50809..51972 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9348.t1 ID=Ggra9348.t1|Name=Ggra9348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MTAFIPCPLAARRPQAHARKKHRFACSTQPPNHPSNTPSEGGSHSEKLPW
HLLQSRISHLQEKQVARDRFIARNWRTGNYRASIVASVHNDFVRKLAFHG
EFMAFGTASGSVVFSDLVSGYRIRCDNVHDGQVTAIDYRDGYIASVASVD
RKICVWPCQQFDNRRFWSKRVRNGDDVEGKLPEPTLTVSGHDDIVTSLRI
DANKGILYSASVDGTVRLTQLETGETIRIIRVGDPVLSMTVTDKGYLLLG
CASGKVQAYQADNGLYLLSILCHGANTTALDYLEERELLATGDSAGHLSM
WSLKDGSKVSSLHRHQAAVMSLQLDGSKLISAGRDGCVAVQSIDNSENHY
AICGFTRYIGTVAFDESRLIADGTNDVIVCHRFDFKE*
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spliced messenger RNA

>Ggra9348.t1 ID=Ggra9348.t1|Name=Ggra9348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000883_pilon:50809..51972+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCTTCATTCCATGCCCGCTGGCAGCAAGAAGACCTCAGGCACA
CGCACGAAAGAAGCACCGCTTCGCCTGCAGTACACAGCCTCCAAACCATC
CGTCGAACACCCCGTCTGAAGGGGGCTCGCACTCAGAAAAGCTCCCATGG
CATCTCCTTCAATCTCGTATATCTCATCTTCAGGAGAAGCAAGTCGCCCG
CGATAGATTTATTGCACGAAACTGGCGTACGGGTAACTACAGAGCGAGTA
TTGTGGCGTCGGTGCATAATGATTTCGTGAGAAAACTCGCTTTTCATGGT
GAGTTCATGGCGTTTGGAACCGCTTCGGGAAGTGTAGTGTTCTCAGACCT
TGTTAGTGGGTACAGAATACGTTGTGATAACGTTCATGACGGGCAGGTTA
CTGCTATTGATTATCGGGATGGATATATTGCTTCAGTTGCTTCTGTGGAT
AGAAAGATCTGTGTGTGGCCGTGTCAACAGTTTGACAATCGACGCTTTTG
GTCAAAACGTGTTCGCAATGGAGATGACGTAGAAGGAAAACTTCCGGAGC
CTACACTAACAGTTTCCGGACATGACGACATTGTGACTTCTCTTCGTATC
GATGCCAACAAAGGTATTTTGTATTCTGCGAGCGTCGATGGCACAGTCAG
ATTGACTCAACTCGAAACTGGAGAAACAATACGCATCATTCGCGTGGGTG
ACCCAGTACTTTCAATGACCGTCACTGATAAAGGTTACTTGCTCCTCGGT
TGTGCCAGTGGCAAAGTACAGGCCTATCAGGCTGACAATGGATTGTACTT
GCTCTCAATTCTTTGTCATGGAGCGAATACAACAGCCTTAGACTACCTTG
AAGAACGTGAGTTATTGGCAACCGGTGATTCCGCAGGCCATTTGAGCATG
TGGTCCTTGAAGGATGGGTCTAAAGTATCGTCATTACACCGACATCAGGC
GGCAGTGATGTCTTTACAACTGGATGGTTCAAAGTTAATATCCGCCGGTA
GAGACGGTTGCGTCGCCGTTCAATCTATAGACAATTCCGAAAACCATTAC
GCCATATGCGGCTTCACACGCTACATCGGTACCGTAGCATTTGATGAATC
GAGATTGATCGCAGACGGTACTAACGACGTCATCGTGTGTCATCGCTTTG
ACTTTAAAGAATGA
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protein sequence of Ggra9348.t1

>Ggra9348.t1 ID=Ggra9348.t1|Name=Ggra9348.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MTAFIPCPLAARRPQAHARKKHRFACSTQPPNHPSNTPSEGGSHSEKLPW
HLLQSRISHLQEKQVARDRFIARNWRTGNYRASIVASVHNDFVRKLAFHG
EFMAFGTASGSVVFSDLVSGYRIRCDNVHDGQVTAIDYRDGYIASVASVD
RKICVWPCQQFDNRRFWSKRVRNGDDVEGKLPEPTLTVSGHDDIVTSLRI
DANKGILYSASVDGTVRLTQLETGETIRIIRVGDPVLSMTVTDKGYLLLG
CASGKVQAYQADNGLYLLSILCHGANTTALDYLEERELLATGDSAGHLSM
WSLKDGSKVSSLHRHQAAVMSLQLDGSKLISAGRDGCVAVQSIDNSENHY
AICGFTRYIGTVAFDESRLIADGTNDVIVCHRFDFKE*
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mRNA from alignment at tig00000883_pilon:50809..51972+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9348.t1 ID=Ggra9348.t1|Name=Ggra9348.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000883_pilon:50809..51972+ (Gracilaria gracilis GNS1m male)
ATGACGGCCTTCATTCCATGCCCGCTGGCAGCAAGAAGACCTCAGGCACA
CGCACGAAAGAAGCACCGCTTCGCCTGCAGTACACAGCCTCCAAACCATC
CGTCGAACACCCCGTCTGAAGGGGGCTCGCACTCAGAAAAGCTCCCATGG
CATCTCCTTCAATCTCGTATATCTCATCTTCAGGAGAAGCAAGTCGCCCG
CGATAGATTTATTGCACGAAACTGGCGTACGGGTAACTACAGAGCGAGTA
TTGTGGCGTCGGTGCATAATGATTTCGTGAGAAAACTCGCTTTTCATGGT
GAGTTCATGGCGTTTGGAACCGCTTCGGGAAGTGTAGTGTTCTCAGACCT
TGTTAGTGGGTACAGAATACGTTGTGATAACGTTCATGACGGGCAGGTTA
CTGCTATTGATTATCGGGATGGATATATTGCTTCAGTTGCTTCTGTGGAT
AGAAAGATCTGTGTGTGGCCGTGTCAACAGTTTGACAATCGACGCTTTTG
GTCAAAACGTGTTCGCAATGGAGATGACGTAGAAGGAAAACTTCCGGAGC
CTACACTAACAGTTTCCGGACATGACGACATTGTGACTTCTCTTCGTATC
GATGCCAACAAAGGTATTTTGTATTCTGCGAGCGTCGATGGCACAGTCAG
ATTGACTCAACTCGAAACTGGAGAAACAATACGCATCATTCGCGTGGGTG
ACCCAGTACTTTCAATGACCGTCACTGATAAAGGTTACTTGCTCCTCGGT
TGTGCCAGTGGCAAAGTACAGGCCTATCAGGCTGACAATGGATTGTACTT
GCTCTCAATTCTTTGTCATGGAGCGAATACAACAGCCTTAGACTACCTTG
AAGAACGTGAGTTATTGGCAACCGGTGATTCCGCAGGCCATTTGAGCATG
TGGTCCTTGAAGGATGGGTCTAAAGTATCGTCATTACACCGACATCAGGC
GGCAGTGATGTCTTTACAACTGGATGGTTCAAAGTTAATATCCGCCGGTA
GAGACGGTTGCGTCGCCGTTCAATCTATAGACAATTCCGAAAACCATTAC
GCCATATGCGGCTTCACACGCTACATCGGTACCGTAGCATTTGATGAATC
GAGATTGATCGCAGACGGTACTAACGACGTCATCGTGTGTCATCGCTTTG
ACTTTAAAGAATGA
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Coding sequence (CDS) from alignment at tig00000883_pilon:50809..51972+

>Ggra9348.t1 ID=Ggra9348.t1|Name=Ggra9348.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000883_pilon:50809..51972+ (Gracilaria gracilis GNS1m male)
ATGACGGCCTTCATTCCATGCCCGCTGGCAGCAAGAAGACCTCAGGCACA
CGCACGAAAGAAGCACCGCTTCGCCTGCAGTACACAGCCTCCAAACCATC
CGTCGAACACCCCGTCTGAAGGGGGCTCGCACTCAGAAAAGCTCCCATGG
CATCTCCTTCAATCTCGTATATCTCATCTTCAGGAGAAGCAAGTCGCCCG
CGATAGATTTATTGCACGAAACTGGCGTACGGGTAACTACAGAGCGAGTA
TTGTGGCGTCGGTGCATAATGATTTCGTGAGAAAACTCGCTTTTCATGGT
GAGTTCATGGCGTTTGGAACCGCTTCGGGAAGTGTAGTGTTCTCAGACCT
TGTTAGTGGGTACAGAATACGTTGTGATAACGTTCATGACGGGCAGGTTA
CTGCTATTGATTATCGGGATGGATATATTGCTTCAGTTGCTTCTGTGGAT
AGAAAGATCTGTGTGTGGCCGTGTCAACAGTTTGACAATCGACGCTTTTG
GTCAAAACGTGTTCGCAATGGAGATGACGTAGAAGGAAAACTTCCGGAGC
CTACACTAACAGTTTCCGGACATGACGACATTGTGACTTCTCTTCGTATC
GATGCCAACAAAGGTATTTTGTATTCTGCGAGCGTCGATGGCACAGTCAG
ATTGACTCAACTCGAAACTGGAGAAACAATACGCATCATTCGCGTGGGTG
ACCCAGTACTTTCAATGACCGTCACTGATAAAGGTTACTTGCTCCTCGGT
TGTGCCAGTGGCAAAGTACAGGCCTATCAGGCTGACAATGGATTGTACTT
GCTCTCAATTCTTTGTCATGGAGCGAATACAACAGCCTTAGACTACCTTG
AAGAACGTGAGTTATTGGCAACCGGTGATTCCGCAGGCCATTTGAGCATG
TGGTCCTTGAAGGATGGGTCTAAAGTATCGTCATTACACCGACATCAGGC
GGCAGTGATGTCTTTACAACTGGATGGTTCAAAGTTAATATCCGCCGGTA
GAGACGGTTGCGTCGCCGTTCAATCTATAGACAATTCCGAAAACCATTAC
GCCATATGCGGCTTCACACGCTACATCGGTACCGTAGCATTTGATGAATC
GAGATTGATCGCAGACGGTACTAACGACGTCATCGTGTGTCATCGCTTTG
ACTTTAAAGAATGA
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