|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 157072.XP_008869825.1 |
| PFAMs | zf-CW |
| Max annot lvl | 2759|Eukaryota |
| Evalue | 1.22e-10 |
| EggNOG OGs | 28QCH@1|root,2QX19@2759|Eukaryota |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9407.t1.stop1 | Ggra9407.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000883_pilon 459479..459481 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra9407.t1.start1 | Ggra9407.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000883_pilon 464342..464344 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra9407.t1 ID=Ggra9407.t1|Name=Ggra9407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=517bp MTKLRLKLLVSYIDSLFFDSQSVIATGLIRRPSFTNKSTYGVDMKYKERM DEQEFLPLIGQSYVIMIVRPGLERRKATDKSEVESHRRRLEALWSTQGHC EAEQSIDALRFTSPRRSRTQACAKHRTTPRPRQWPPSPNRVLPPAYPRSR PLVRVMGELRLRFRFPDGRQITLNDVARSDTYGALLSRVQATASLHAPPE RVLIAGPPPTPVRARADAVVDTLFDSGQTLIVEPPKRATRARRRAAPQKA RAGGVAGVRDLVAQSVDSGDEWTPDAHAREGDDDDDVVPVRTVGRKRSRA AASGAAPARAGAADIATLSRNKRRNTGKKDAGEVMETLMGEDARGMIGAE LAKAVTGDGSQLDACGQSFRNSLQSALEQRQKEAEGERRYQAWLAKRYEI IDNGGYTFKVRYRALDARAWTEETGMFKLPRELLAEAFRDVLKNQEQREG LRVLSMATVSPRSFWNMVRLFGEKVEEGLMELVPESDWSFIKTRRRRMSA KARRNLEQPADVIKLD* back to topspliced messenger RNA >Ggra9407.t1 ID=Ggra9407.t1|Name=Ggra9407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1551bp|location=Sequence derived from alignment at tig00000883_pilon:459479..464344- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGACTAAACTACGTTTGAAGTTGTTAGTTAGTTACATTGATTCGCTATT CTTCGATAGTCAGTCAGTCATAGCTACGGGCCTGATACGGAGGCCTTCAT TTACGAATAAGTCCACTTACGGAGTTGATATGAAATATAAGGAAAGAATG GACGAACAGGAGTTTTTGCCGCTGATAGGCCAAAGCTACGTAATTATGAT CGTTCGACCGGGCTTGGAGAGAAGGAAGGCAACCGATAAGTCCGAGGTTG AATCTCATCGACGAAGGCTAGAAGCGCTGTGGTCTACCCAGGGGCACTGT GAGGCTGAACAATCTATCGATGCGCTGCGCTTCACTTCGCCGCGCCGATC GCGAACACAAGCCTGCGCCAAGCACCGCACCACACCGCGCCCGCGGCAGT GGCCACCGTCCCCCAACCGCGTCCTCCCGCCAGCGTACCCTCGCTCGCGT CCCCTCGTCCGCGTCATGGGCGAGCTGCGGCTACGCTTCCGCTTCCCCGA CGGGCGTCAAATCACGCTCAACGACGTGGCGCGCTCGGACACGTACGGCG CCTTGCTGTCGCGCGTGCAGGCGACCGCCTCTCTTCACGCGCCGCCAGAG CGCGTGCTTATCGCCGGGCCGCCGCCCACGCCCGTGCGCGCGCGCGCCGA CGCCGTCGTCGACACGCTGTTCGACTCTGGCCAGACGCTCATCGTCGAGC CGCCCAAACGCGCCACGCGCGCTCGCCGACGCGCCGCGCCGCAGAAGGCG CGCGCGGGCGGCGTGGCGGGCGTGCGCGACTTGGTGGCGCAGTCCGTTGA CAGCGGCGATGAGTGGACGCCGGACGCGCACGCGCGCGAGGGCGACGATG ACGATGACGTGGTGCCCGTGCGCACCGTGGGTAGGAAGCGATCGCGCGCC GCTGCTAGTGGCGCTGCGCCGGCGCGCGCCGGCGCTGCTGACATTGCCAC GTTGAGCCGGAACAAGCGGCGCAACACGGGGAAGAAGGACGCCGGCGAGG TGATGGAGACGCTCATGGGCGAGGATGCGCGCGGTATGATCGGCGCCGAA CTGGCCAAGGCGGTGACTGGAGATGGTTCTCAGCTGGATGCGTGCGGACA GTCGTTTCGAAATAGCTTGCAGTCTGCTTTGGAACAGCGCCAGAAGGAGG CTGAGGGAGAGCGTCGCTACCAGGCGTGGCTTGCGAAGCGCTATGAAATC ATTGATAACGGCGGCTATACGTTCAAGGTGCGGTATCGCGCGCTGGATGC GCGCGCGTGGACGGAGGAGACGGGCATGTTCAAGTTGCCGCGCGAGTTGT TGGCGGAGGCGTTTCGCGACGTGCTCAAGAATCAGGAGCAGCGCGAGGGA CTGCGCGTGCTTTCGATGGCCACGGTGTCGCCGCGATCGTTTTGGAATAT GGTTCGTCTGTTTGGGGAGAAGGTTGAAGAGGGGTTGATGGAACTTGTTC CGGAATCGGATTGGTCGTTCATCAAGACTAGACGTCGACGCATGTCGGCC AAGGCGCGACGTAACTTGGAACAGCCGGCGGATGTCATCAAGCTTGACTG A back to topprotein sequence of Ggra9407.t1 >Ggra9407.t1 ID=Ggra9407.t1|Name=Ggra9407.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=517bp
MTKLRLKLLVSYIDSLFFDSQSVIATGLIRRPSFTNKSTYGVDMKYKERM DEQEFLPLIGQSYVIMIVRPGLERRKATDKSEVESHRRRLEALWSTQGHC EAEQSIDALRFTSPRRSRTQACAKHRTTPRPRQWPPSPNRVLPPAYPRSR PLVRVMGELRLRFRFPDGRQITLNDVARSDTYGALLSRVQATASLHAPPE RVLIAGPPPTPVRARADAVVDTLFDSGQTLIVEPPKRATRARRRAAPQKA RAGGVAGVRDLVAQSVDSGDEWTPDAHAREGDDDDDVVPVRTVGRKRSRA AASGAAPARAGAADIATLSRNKRRNTGKKDAGEVMETLMGEDARGMIGAE LAKAVTGDGSQLDACGQSFRNSLQSALEQRQKEAEGERRYQAWLAKRYEI IDNGGYTFKVRYRALDARAWTEETGMFKLPRELLAEAFRDVLKNQEQREG LRVLSMATVSPRSFWNMVRLFGEKVEEGLMELVPESDWSFIKTRRRRMSA KARRNLEQPADVIKLD* back to topmRNA from alignment at tig00000883_pilon:459479..464344- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra9407.t1 ID=Ggra9407.t1|Name=Ggra9407.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4866bp|location=Sequence derived from alignment at tig00000883_pilon:459479..464344- (Gracilaria gracilis GNS1m male) ATGACTAAACTACGTTTGAAGTTGTTAGTTAGTTACATTGATTCGCTATT
CTTCGATAGTCAGTCAGTCATAGCTACGGGCCTGATACGGAGGCCTTCAT
TTACGAATAAGTACAAGAACATTTCAAATTGAGACCCTGCCTAATGTACT
AACGCTATGTTTGCTTGGTTTTGTTTTTCCATCAGGTCCACTTACGGGTA
TATCTTATTAGTATGGGTACTATATGTTTTTTGAGAAGCCAGTGACTGCC
CAACTATATTTCCAACCTGGTGTCATGGGCGAGCTGCCACTCTTTATGCG
TAGAGTTGATATGAAATATAAGGAAAGAATGGACGAACAGGAGTTTTTGC
CGCTGATAGGCCAAAGCTACGTAATTATGATCGTTCGACCGGGCTTGGAG
AGAAGGAAGGCAACCGATAAGTCCGAGGTTGAATCTCATCGACGAAGGCT
AGAAGCGCTGTGGTCTACCCAGGGGCGTATTTCTGACTGACTAAATGGGG
GTACCCCAAAGTCACTAGTCATTAGTTTATTACGGCAGTCAGTCAGATTT
AGTCATGATCTAGTCATCAGGTATATCACCAGAACTGTAGCGCGTTTGGC
ACCATTGGGAGCATCATCTCTTCTTGGATATATCTCGAGCAACTTTGAGA
ACAGTTTGACGAAAAGGCAGAGGCAGTCGGATGCAAAACAGTGCCTTGTT
GGTTTGCTCACGGACAAGCTTTTTCGCAATAGTGCTTTCTCTGGGACACT
GGGTGGAGTTTGCAGTAATCTCTTCAACGCTGTTGTCTATCTGATGCATG
GCGTTTCTCCTAAGAGTGAAGGAAGTGATGAGGCCTTTTGTTTGGTCATT
GAAACGATCGGTGAGACAAAAAAATGGTAGGAATGAAGCCAGGAAAGATG
CCTGATCAAACGGTGCCTTTGATGTTCGCAAGGAATGTAGCTTTTTTACT
TGCCGCCGCCGTCGACAGCTTTGCTAGAAAGACATCTAAACTTTTAAGCA
GAGTATTGACTAGTATTGACTTCTTGCCGTCGATTGTGGTATGCTTTGGA
CAGTGTCATGGCGCGTTTTTTGTTTCATATCTGTGTATATAGTCAGTCAT
CGCGTTCAATGACTAGAATGACTGACTAGATATAAAGAGGACGAGTCAGT
CAGTCAAAGTCATTCATAATTGTAGGGAAGTCAGTCAGTCATAAATACGG
CCCTGGGTCTACCGGAGAAGCTCTGGACATATTGATGGATGTTCGAAAGG
AGCTGAGGCCAGTCAGATTGTTAGGCATTGAAACCAAAGACTTTAGAAAG
CTTTTTGTTTGAAATCAAACGAAGGTTGTACGTACAATAATAGTTCCATG
TAAATCATTTTATCCATGACCAGTGACTTACCAAGGGTACGCTTCACGCC
GTGAAGCATAATGACATGAGTTAACGCGCACTTCGTGAATGTTCAGCATC
AAAACTTTGACAGAGACATGCCGTTTTAAAAGGACCGCTGCGAGAAGATC
GTGTTTGCCTTCTCTGCGAGAGGACATGAGTTAGTTGTTTCTGAAGTTAA
AAGGAAATGGCCTGAAACAATACTGGGCTTTCTGGCGAGAGAACGTTTCT
TCAAACAGAAACGCTCCGCATTACGTTCGTTATTTACCTTGTGTGCTCAT
AAAGAGAGAGATAGAGATGTTGCCTTACTAAGTTCATAGTCTACAGTAAA
CCAGTCTAGGTACTTGTATGATGACAGAGATCGGGGCGTATTTGTGACTG
ACTATTTTCATGTACCTCTCAGTCAGTAGTCATAAACGTGCTACGCCGCG
TAGTCACATTCCTCTAGAAACATTCAGAAACGAAGTATAAACTTATTAGG
GGAAACAAAACGGTAGTCATTCTGACGAAAGAGGCAAAAACAGTCAGTCA
CAAATACGACCCTGGGTTGTATGCTTTGCGCACTTTCCACTTCAGTACAA
TGCTGTTAACTAAGACAATCAGATTATATGAGTTAAACTGTCATGAGCGG
ACTACACTTTATTAGGCTCGCTCTGTTAGACAAAGAACTAGCTTGTGCAG
ATGTTGTTAGAGAGTTTCAAAAGTCGTTCAGTGTCCTGGTCGATTTCAAA
TGGATCGGTGCACTGATCCTTGTCGTTTCCTTCCATATTACCATATTGGC
GGTTTGTGCAAAGTATAAGGCAATTCCAAATCCTGTAAACACACATGCCG
TTATGAGACGAAGCTGAAACTTGGTGTATAGATACCGCTCATCGTGAGCT
TTCTGTCAGTGTGCTTCAATTTGCATGTGGACGGCGGGGGTCGGAGGTTG
AACTAAAAAGCTGCGCAAGCGATGGATCAGGACACTGATCGTTCAAAACT
GGCACTAGGTATGTGTTATGTTTGCAATAGTATTGTTAGTAATCGGTACA
GATGGTGTCGCTCTTACCCATGATCACTCGTTCACGATGAATGCATAGTT
CCGTGGGAACATTATAGAAGCGTCCAAAGTAGACAAAACATCAGGTGTGT
GGGATTGCTCTGTTAGTTGAGACATCATAGACGAGGACAGAAGATGCAGA
GAGCGGGAGTCAGTATCGCTGGTAGAATGTGAATGAGTGGATTGACTTTG
TTGTTCAAACGAATGGAATTGATATGCGCCCTGCAGCGGTTTCCTCGATG
CGGTGATCAACGCTTCTCTCCACCGTTTTGCATCGCCTTTTGATATGCAT
GACACGCGAAGCTGCTCACCAGTAGAGAACTTGATTATGAACGACCTGGG
CATGAGGGAGCACGGGGCGACAATTGTGCATCCAAGCACGGAGATTTCGG
TGGCGGCGTTGGAAACAAACGGTTCGTGATCATTGTGGAGCGCTAGAATG
GAGCGACGGAGACGCATGTAGGTGGACCTCTTGTGAGAGAAAAAAGACGG
ACGCAGTTTGACATAACCCTGGCGATCAAACAGTTTGCGGCGTCGAACGG
TTGGCGGACGGGCCATATCAGTGATTGGATGTTCTGGGAATGAAAGTAGC
TGCATATGCCAGTACAGTTCCAAGCGGTTCGGTGTAGCAGCTTGTGGACA
GCGGACGCTTTGAATGTACACACGATAGAAAGATGCAGTGAAGCCCAAGT
CGTAGCGCACAAAGAAGGTATTCGCTTATATACCACTCGGAGCGCAGCAT
AACGAACTACTCAGATGCATACCACCAGTTGGAATTGAATATGACGCAAG
CGCCGCCACAATTGCGCGCCCAAGTTATGCACGGGGGAGCGCGGCGCGCG
CGGGTCAAACACGGCAGCTGCCATCGTCGCGTTCCGGCGCGTGCGTCGCG
ACGCGCCGGAACGCGGCGACGGGGACGCTGACTGGCGGGAGATAAGCGGT
GCGGATGGGCGGAAACAGCGCTGAGGGACGACTCGACCGCGAGGGTGGAC
AATGGCACGAGTGCGCGCGAGATGTTGCGGTCCGCGTGCGCGGCGGTTGG
CGGGCGAAACGACGCACGGCTCGTACGCGCATTGGACACCGCGCGCAACG
AATATCTATCTGAGCCGCGCGGCCAGTGTCAACAACCGTCTCCAAATTGC
AGAGCGAACACGTGCCTGATTTCGGTTCGCATTTCAAAACACTGGTTCAG
CCTCAGACAGACTGTGAGGCTGAACAATCTATCGATGCGCTGCGCTTCAC
TTCGCCGCGCCGATCGCGAACACAAGCCTGCGCCAAGCACCGCACCACAC
CGCGCCCGCGGCAGTGGCCACCGTCCCCCAACCGCGTCCTCCCGCCAGCG
TACCCTCGCTCGCGTCCCCTCGTCCGCGTCATGGGCGAGCTGCGGCTACG
CTTCCGCTTCCCCGACGGGCGTCAAATCACGCTCAACGACGTGGCGCGCT
CGGACACGTACGGCGCCTTGCTGTCGCGCGTGCAGGCGACCGCCTCTCTT
CACGCGCCGCCAGAGCGCGTGCTTATCGCCGGGCCGCCGCCCACGCCCGT
GCGCGCGCGCGCCGACGCCGTCGTCGACACGCTGTTCGACTCTGGCCAGA
CGCTCATCGTCGAGCCGCCCAAACGCGCCACGCGCGCTCGCCGACGCGCC
GCGCCGCAGAAGGCGCGCGCGGGCGGCGTGGCGGGCGTGCGCGACTTGGT
GGCGCAGTCCGTTGACAGCGGCGATGAGTGGACGCCGGACGCGCACGCGC
GCGAGGGCGACGATGACGATGACGTGGTGCCCGTGCGCACCGTGGGTAGG
AAGCGATCGCGCGCCGCTGCTAGTGGCGCTGCGCCGGCGCGCGCCGGCGC
TGCTGACATTGCCACGTTGAGCCGGAACAAGCGGCGCAACACGGGGAAGA
AGGACGCCGGCGAGGTGATGGAGACGCTCATGGGCGAGGATGCGCGCGGT
ATGATCGGCGCCGAACTGGCCAAGGCGGTGACTGGAGATGGTTCTCAGCT
GGATGCGTGCGGACAGTCGTTTCGAAATAGCTTGCAGTCTGCTTTGGAAC
AGCGCCAGAAGGAGGCTGAGGGAGAGCGTCGCTACCAGGCGTGGCTTGCG
AAGCGCTATGAAATCATTGATAACGGCGGCTATACGTTCAAGGTGCGGTA
TCGCGCGCTGGATGCGCGCGCGTGGACGGAGGAGACGGGCATGTTCAAGT
TGCCGCGCGAGTTGTTGGCGGAGGCGTTTCGCGACGTGCTCAAGAATCAG
GAGCAGCGCGAGGGACTGCGCGTGCTTTCGATGGCCACGGTGTCGCCGCG
ATCGTTTTGGAATATGGTTCGTCTGTTTGGGGAGAAGGTTGAAGAGGGGT
TGATGGAACTTGTTCCGGAATCGGATTGGTCGTTCATCAAGACTAGACGT
CGACGCATGTCGGCCAAGGCGCGACGTAACTTGGAACAGCCGGCGGATGT
CATCAAGCTTGACTGA back to topCoding sequence (CDS) from alignment at tig00000883_pilon:459479..464344- >Ggra9407.t1 ID=Ggra9407.t1|Name=Ggra9407.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1551bp|location=Sequence derived from alignment at tig00000883_pilon:459479..464344- (Gracilaria gracilis GNS1m male) ATGACTAAACTACGTTTGAAGTTGTTAGTTAGTTACATTGATTCGCTATT CTTCGATAGTCAGTCAGTCATAGCTACGGGCCTGATACGGAGGCCTTCAT TTACGAATAAGTCCACTTACGGAGTTGATATGAAATATAAGGAAAGAATG GACGAACAGGAGTTTTTGCCGCTGATAGGCCAAAGCTACGTAATTATGAT CGTTCGACCGGGCTTGGAGAGAAGGAAGGCAACCGATAAGTCCGAGGTTG AATCTCATCGACGAAGGCTAGAAGCGCTGTGGTCTACCCAGGGGCACTGT GAGGCTGAACAATCTATCGATGCGCTGCGCTTCACTTCGCCGCGCCGATC GCGAACACAAGCCTGCGCCAAGCACCGCACCACACCGCGCCCGCGGCAGT GGCCACCGTCCCCCAACCGCGTCCTCCCGCCAGCGTACCCTCGCTCGCGT CCCCTCGTCCGCGTCATGGGCGAGCTGCGGCTACGCTTCCGCTTCCCCGA CGGGCGTCAAATCACGCTCAACGACGTGGCGCGCTCGGACACGTACGGCG CCTTGCTGTCGCGCGTGCAGGCGACCGCCTCTCTTCACGCGCCGCCAGAG CGCGTGCTTATCGCCGGGCCGCCGCCCACGCCCGTGCGCGCGCGCGCCGA CGCCGTCGTCGACACGCTGTTCGACTCTGGCCAGACGCTCATCGTCGAGC CGCCCAAACGCGCCACGCGCGCTCGCCGACGCGCCGCGCCGCAGAAGGCG CGCGCGGGCGGCGTGGCGGGCGTGCGCGACTTGGTGGCGCAGTCCGTTGA CAGCGGCGATGAGTGGACGCCGGACGCGCACGCGCGCGAGGGCGACGATG ACGATGACGTGGTGCCCGTGCGCACCGTGGGTAGGAAGCGATCGCGCGCC GCTGCTAGTGGCGCTGCGCCGGCGCGCGCCGGCGCTGCTGACATTGCCAC GTTGAGCCGGAACAAGCGGCGCAACACGGGGAAGAAGGACGCCGGCGAGG TGATGGAGACGCTCATGGGCGAGGATGCGCGCGGTATGATCGGCGCCGAA CTGGCCAAGGCGGTGACTGGAGATGGTTCTCAGCTGGATGCGTGCGGACA GTCGTTTCGAAATAGCTTGCAGTCTGCTTTGGAACAGCGCCAGAAGGAGG CTGAGGGAGAGCGTCGCTACCAGGCGTGGCTTGCGAAGCGCTATGAAATC ATTGATAACGGCGGCTATACGTTCAAGGTGCGGTATCGCGCGCTGGATGC GCGCGCGTGGACGGAGGAGACGGGCATGTTCAAGTTGCCGCGCGAGTTGT TGGCGGAGGCGTTTCGCGACGTGCTCAAGAATCAGGAGCAGCGCGAGGGA CTGCGCGTGCTTTCGATGGCCACGGTGTCGCCGCGATCGTTTTGGAATAT GGTTCGTCTGTTTGGGGAGAAGGTTGAAGAGGGGTTGATGGAACTTGTTC CGGAATCGGATTGGTCGTTCATCAAGACTAGACGTCGACGCATGTCGGCC AAGGCGCGACGTAACTTGGAACAGCCGGCGGATGTCATCAAGCTTGACTG A back to top
|