Ggra9354.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9354.t1
Unique NameGgra9354.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length297
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000883_piloncontigtig00000883_pilon:65273..66675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9354Ggra9354Gracilaria gracilis GNS1m malegenetig00000883_pilon 65273..66675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1Ggra9354.t1Gracilaria gracilis GNS1m malepolypeptidetig00000883_pilon 65273..66675 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1.stop1Ggra9354.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000883_pilon 65273..65275 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1.CDS1Ggra9354.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000883_pilon 65273..65440 -
Ggra9354.t1.CDS2Ggra9354.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000883_pilon 65953..66675 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1.exon1Ggra9354.t1.exon1Gracilaria gracilis GNS1m maleexontig00000883_pilon 65273..65440 -
Ggra9354.t1.exon2Ggra9354.t1.exon2Gracilaria gracilis GNS1m maleexontig00000883_pilon 65953..66675 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1.intron1Ggra9354.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000883_pilon 65441..65952 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9354.t1.start1Ggra9354.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000883_pilon 66673..66675 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9354.t1 ID=Ggra9354.t1|Name=Ggra9354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=297bp
MSPATHFVPLLLLSAFSLMITTSATPIHPSHATDVSPLQRIFPPERHICE
GGTAQHSLLREHASIICTRTSFKQPLQCTAGLWSPLLLIRDVNLDCAASQ
RDCTLHYYMDYTPLALFALTCAVIALVMLLLALPMYLAVQKFVQCMHNVE
RQRLLRKARLVKHVSALYLDDMKREGYGSFGGRLHTLGNYSDSLASILDY
DPTSESDVNRARYPQVDNSVPLESVFVDVKPRPPCKVEPTRYRSGEKTLA
EWVEANRHVVAGSMFMFYVSLAAWNLRPGKKSKAKESAEGAADAAA*
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spliced messenger RNA

>Ggra9354.t1 ID=Ggra9354.t1|Name=Ggra9354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=891bp|location=Sequence derived from alignment at tig00000883_pilon:65273..66675- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCCCGCAACGCATTTCGTTCCTCTGCTCCTTCTTTCTGCCTTCTC
ACTTATGATAACAACGAGCGCCACACCGATTCACCCCTCGCACGCAACAG
ACGTCTCTCCGCTTCAACGAATCTTCCCGCCAGAGCGGCACATTTGCGAG
GGAGGTACCGCGCAGCACTCGCTGCTACGCGAGCACGCCAGCATAATCTG
CACGCGCACGTCGTTCAAACAGCCGCTACAATGCACAGCCGGGCTGTGGT
CACCGCTGCTGCTCATTCGCGACGTGAACCTAGACTGCGCCGCTTCCCAA
CGCGACTGCACGCTACACTACTACATGGACTACACGCCTCTAGCGTTATT
CGCGCTCACGTGCGCTGTCATTGCGTTGGTGATGTTGTTATTGGCGCTAC
CCATGTACCTTGCCGTACAAAAGTTCGTACAGTGCATGCATAACGTCGAG
CGACAACGGCTGCTAAGAAAGGCCAGACTAGTCAAGCACGTATCGGCACT
CTACCTCGACGACATGAAGCGCGAGGGCTACGGCTCATTTGGCGGCCGTC
TACACACACTGGGCAACTACTCGGACAGTCTGGCATCCATCCTGGACTAC
GATCCGACCAGCGAATCTGACGTCAACCGCGCGCGATACCCACAGGTGGA
CAACTCCGTACCGCTAGAATCCGTGTTCGTCGACGTGAAGCCACGGCCGC
CTTGCAAGGTGGAGCCCACGAGGTACCGCTCCGGCGAGAAGACGCTCGCC
GAATGGGTCGAGGCCAACCGTCACGTCGTTGCCGGCAGCATGTTCATGTT
CTACGTGTCGCTCGCGGCGTGGAATTTGCGCCCGGGGAAGAAGAGCAAGG
CCAAGGAGAGTGCTGAGGGCGCCGCGGACGCGGCGGCCTAG
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protein sequence of Ggra9354.t1

>Ggra9354.t1 ID=Ggra9354.t1|Name=Ggra9354.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=297bp
MSPATHFVPLLLLSAFSLMITTSATPIHPSHATDVSPLQRIFPPERHICE
GGTAQHSLLREHASIICTRTSFKQPLQCTAGLWSPLLLIRDVNLDCAASQ
RDCTLHYYMDYTPLALFALTCAVIALVMLLLALPMYLAVQKFVQCMHNVE
RQRLLRKARLVKHVSALYLDDMKREGYGSFGGRLHTLGNYSDSLASILDY
DPTSESDVNRARYPQVDNSVPLESVFVDVKPRPPCKVEPTRYRSGEKTLA
EWVEANRHVVAGSMFMFYVSLAAWNLRPGKKSKAKESAEGAADAAA*
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mRNA from alignment at tig00000883_pilon:65273..66675-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9354.t1 ID=Ggra9354.t1|Name=Ggra9354.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1403bp|location=Sequence derived from alignment at tig00000883_pilon:65273..66675- (Gracilaria gracilis GNS1m male)
ATGTCGCCCGCAACGCATTTCGTTCCTCTGCTCCTTCTTTCTGCCTTCTC
ACTTATGATAACAACGAGCGCCACACCGATTCACCCCTCGCACGCAACAG
ACGTCTCTCCGCTTCAACGAATCTTCCCGCCAGAGCGGCACATTTGCGAG
GGAGGTACCGCGCAGCACTCGCTGCTACGCGAGCACGCCAGCATAATCTG
CACGCGCACGTCGTTCAAACAGCCGCTACAATGCACAGCCGGGCTGTGGT
CACCGCTGCTGCTCATTCGCGACGTGAACCTAGACTGCGCCGCTTCCCAA
CGCGACTGCACGCTACACTACTACATGGACTACACGCCTCTAGCGTTATT
CGCGCTCACGTGCGCTGTCATTGCGTTGGTGATGTTGTTATTGGCGCTAC
CCATGTACCTTGCCGTACAAAAGTTCGTACAGTGCATGCATAACGTCGAG
CGACAACGGCTGCTAAGAAAGGCCAGACTAGTCAAGCACGTATCGGCACT
CTACCTCGACGACATGAAGCGCGAGGGCTACGGCTCATTTGGCGGCCGTC
TACACACACTGGGCAACTACTCGGACAGTCTGGCATCCATCCTGGACTAC
GATCCGACCAGCGAATCTGACGTCAACCGCGCGCGATACCCACAGGTGGA
CAACTCCGTACCGCTAGAATCCGTGTTCGTCGACGTGAAGCCACGGCCGC
CTTGCAAGGTGGAGCCCACGAGGGTGAGCGACGTCGTGTGTCAGAACCAC
TGAGTGCCGCCCTTCCTCCTCTTTTTTTACGGAGTAAAGACAAAACACAC
ACATGCGCCTGCGGTCACTTTGCGTGTGCTCCCCGTTCTCTTCCGCTCCC
GCGCGTCGACAGCCCTCTTCCGTTTCTTCCACTCCGCCCTGACCGCGTGG
CACACGGCGCGCGTGTCCACGCGCGCACGTCATGCACGTCCCCACGTCAG
CCACGTACGCCATCGTCAGCGCGCGCGTCGCAGCATTGGCGCGCAGCTGC
CACATCCAAGCGATGCATCGAGTGTCATCTCCACCGTCATCCGGCCGCGC
GATCGACGATCGCCGCCACGCACCAGCAGTTCGCGCCGCCGCCGCTCGCC
CGTCCGCTGCGCAGCATGCAATCGCTCTCGCGCGCCGTCGCGCGCCGCTC
CTTCTCGCCCGCGTCGTCGCGCGCATCGCGCGTCGTGGCGCGCCGCACCT
TCGCCACGGAAGGCCCGCCCGTGTCGTGGTCGCAGTACCGCTCCGGCGAG
AAGACGCTCGCCGAATGGGTCGAGGCCAACCGTCACGTCGTTGCCGGCAG
CATGTTCATGTTCTACGTGTCGCTCGCGGCGTGGAATTTGCGCCCGGGGA
AGAAGAGCAAGGCCAAGGAGAGTGCTGAGGGCGCCGCGGACGCGGCGGCC
TAG
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Coding sequence (CDS) from alignment at tig00000883_pilon:65273..66675-

>Ggra9354.t1 ID=Ggra9354.t1|Name=Ggra9354.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=891bp|location=Sequence derived from alignment at tig00000883_pilon:65273..66675- (Gracilaria gracilis GNS1m male)
ATGTCGCCCGCAACGCATTTCGTTCCTCTGCTCCTTCTTTCTGCCTTCTC
ACTTATGATAACAACGAGCGCCACACCGATTCACCCCTCGCACGCAACAG
ACGTCTCTCCGCTTCAACGAATCTTCCCGCCAGAGCGGCACATTTGCGAG
GGAGGTACCGCGCAGCACTCGCTGCTACGCGAGCACGCCAGCATAATCTG
CACGCGCACGTCGTTCAAACAGCCGCTACAATGCACAGCCGGGCTGTGGT
CACCGCTGCTGCTCATTCGCGACGTGAACCTAGACTGCGCCGCTTCCCAA
CGCGACTGCACGCTACACTACTACATGGACTACACGCCTCTAGCGTTATT
CGCGCTCACGTGCGCTGTCATTGCGTTGGTGATGTTGTTATTGGCGCTAC
CCATGTACCTTGCCGTACAAAAGTTCGTACAGTGCATGCATAACGTCGAG
CGACAACGGCTGCTAAGAAAGGCCAGACTAGTCAAGCACGTATCGGCACT
CTACCTCGACGACATGAAGCGCGAGGGCTACGGCTCATTTGGCGGCCGTC
TACACACACTGGGCAACTACTCGGACAGTCTGGCATCCATCCTGGACTAC
GATCCGACCAGCGAATCTGACGTCAACCGCGCGCGATACCCACAGGTGGA
CAACTCCGTACCGCTAGAATCCGTGTTCGTCGACGTGAAGCCACGGCCGC
CTTGCAAGGTGGAGCCCACGAGGTACCGCTCCGGCGAGAAGACGCTCGCC
GAATGGGTCGAGGCCAACCGTCACGTCGTTGCCGGCAGCATGTTCATGTT
CTACGTGTCGCTCGCGGCGTGGAATTTGCGCCCGGGGAAGAAGAGCAAGG
CCAAGGAGAGTGCTGAGGGCGCCGCGGACGCGGCGGCCTAG
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