Ggra9399.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9399.t1
Unique Name	Ggra9399.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	669

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000883_pilon	contig	tig00000883_pilon:353956..355962 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9399	Ggra9399	Gracilaria gracilis GNS1m male	gene	tig00000883_pilon 353956..355962 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9399.t1.stop1	Ggra9399.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000883_pilon 353956..353958 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9399.t1.CDS1	Ggra9399.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000883_pilon 353956..355962 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9399.t1.exon1	Ggra9399.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000883_pilon 353956..355962 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9399.t1.start1	Ggra9399.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000883_pilon 355960..355962 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9399.t1	Ggra9399.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000883_pilon 353956..355962 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000883_pilon:353956..355962-
coding sequence from alignment at tig00000883_pilon:353956..355962-

mRNA sequence

>Ggra9399.t1 ID=Ggra9399.t1|Name=Ggra9399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=669bp
MTASREPSSSRTRPTSRRSGRRSGAPPVDSASPNQRTNPSNNTRARSSPR
GVGTDNGYQSSARYPRPSPYRKGRRTSRAKANGHPPHESPPGSAPHPSSD
RTGRRNSEAKANAYPLPALPLKPDCVPHLPFDLSEKPQHSFVSDASRVTS
KLFDALVNNRVGVCDAHIHTKENLCVPISRSVLTALNSYLADYACPNTSS
GANCSTATHVKSVPISSQQLRHILEFIYTNDCSFIRNLRSSVLWRKDNDV
PPTAVVDVIQLAYAAHICHTPDLSTWCEKTALAIVRHRPTFLCSALNTVM
NFPTTNADSLIDLWMSRVFEQPAHFLGSMQKESSPFEAHASTEELRCSVL
ELDANAFAMILKTCHGNDEYFFRAVYCWATRGYTEFSKAGPRWRNAIKLA
RRIDFTNVSTKFLLGFVDTSGLVDQESMFSIYRSHLAAKSNLPPSYGLQR
VNENTRKRKSDTKDHIVNHETNTPQKKQRVDSGQATASNKLTHDASLGTT
SVQTHQSRPPYPAPAQDEMLEDDADGNSLALPVSLTPVHQNQTSVTAIEA
PHTREYSAPASFPQNSSLVHGEGGVDQNVVHGSEGQITHSETPQTSTHSN
GASLLEQTPLASMPQLAKNDVVRDVSGADSQYEQMTACPASRVKPVSTKV
KEEDVQRKVKEEYEIIGA*

spliced messenger RNA

>Ggra9399.t1 ID=Ggra9399.t1|Name=Ggra9399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00000883_pilon:353956..355962- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTGCTTCTAGAGAACCGTCATCCAGTCGCACAAGGCCCACAAGCAG
GAGATCCGGTCGACGTTCTGGAGCGCCGCCAGTCGACAGTGCCTCGCCTA
ATCAACGTACAAACCCTTCCAATAACACACGTGCCCGATCTTCCCCCAGA
GGTGTGGGAACTGACAATGGTTATCAATCTTCCGCCCGTTACCCACGCCC
CTCACCTTATAGAAAGGGCCGACGGACCAGTAGAGCCAAAGCCAACGGTC
ATCCGCCCCATGAATCCCCTCCAGGGAGTGCACCACACCCGTCGTCTGAC
AGGACGGGCAGAAGGAACAGCGAAGCTAAAGCCAATGCTTATCCGCTTCC
CGCGCTTCCGCTAAAACCTGACTGCGTCCCCCATTTACCATTTGACCTGT
CCGAGAAACCACAGCATTCGTTTGTTTCGGATGCGTCTCGGGTCACATCA
AAGCTGTTTGATGCTTTGGTGAACAATCGCGTCGGTGTGTGTGATGCCCA
TATACACACCAAAGAGAACCTCTGTGTTCCTATTTCTCGCTCAGTACTCA
CCGCCCTCAACTCCTACTTGGCTGACTACGCATGCCCCAATACTAGCAGC
GGCGCAAACTGTTCCACCGCCACTCACGTTAAATCCGTTCCGATAAGCTC
ACAGCAGCTCCGACACATTCTTGAATTTATCTACACCAATGATTGCTCTT
TCATTCGAAACCTACGCTCCTCTGTGTTGTGGAGAAAGGACAATGACGTC
CCACCCACTGCAGTCGTTGACGTCATTCAGCTGGCATATGCTGCCCACAT
TTGCCACACTCCAGACCTCTCGACATGGTGCGAGAAAACTGCGTTGGCTA
TTGTGCGTCATCGACCAACTTTCCTTTGCTCCGCGTTGAATACCGTTATG
AACTTCCCAACCACAAACGCAGATTCCCTCATTGACCTGTGGATGTCGCG
CGTGTTTGAGCAACCAGCACATTTTCTCGGCTCCATGCAGAAGGAAAGTT
CCCCATTCGAAGCACATGCCTCCACCGAAGAGTTACGTTGCTCAGTTTTG
GAACTTGATGCGAATGCTTTTGCCATGATATTGAAGACGTGCCACGGTAA
TGACGAATACTTCTTTCGCGCCGTCTATTGCTGGGCGACTCGTGGCTACA
CCGAATTCAGCAAAGCCGGCCCGCGCTGGAGAAATGCCATCAAGCTCGCC
CGTCGCATTGACTTCACCAATGTGTCGACAAAGTTCTTGCTTGGTTTTGT
AGACACCTCGGGGCTCGTCGATCAGGAGAGCATGTTTTCGATCTACCGTT
CACATCTAGCTGCGAAATCTAATTTGCCACCAAGCTATGGTCTGCAGCGC
GTGAACGAAAACACCCGAAAAAGGAAGAGTGACACCAAAGATCACATCGT
GAATCACGAGACTAATACACCTCAGAAGAAGCAACGAGTTGATTCTGGAC
AAGCAACTGCATCGAATAAGCTCACCCATGATGCGTCACTCGGAACCACT
TCAGTACAAACACATCAAAGCAGACCTCCTTACCCTGCACCTGCACAAGA
TGAGATGCTTGAAGACGACGCCGATGGTAACAGCCTCGCACTTCCTGTGT
CTCTGACCCCAGTGCATCAAAATCAGACTAGCGTGACTGCTATTGAAGCC
CCTCATACCAGGGAATACTCTGCACCAGCGTCTTTCCCGCAGAATTCTTC
ATTAGTTCATGGTGAAGGCGGAGTTGATCAGAACGTTGTTCATGGCTCTG
AGGGTCAGATAACGCACAGCGAAACTCCCCAAACATCAACGCATTCAAAC
GGAGCATCATTGCTAGAACAGACACCCCTGGCATCTATGCCTCAGCTCGC
CAAAAATGATGTCGTTCGGGACGTCAGTGGGGCTGATTCTCAATATGAAC
AGATGACTGCATGTCCAGCCTCAAGAGTTAAGCCTGTTTCCACGAAAGTT
AAGGAAGAAGATGTTCAACGGAAAGTGAAAGAAGAATATGAGATTATTGG
CGCGTAA

protein sequence of Ggra9399.t1

>Ggra9399.t1 ID=Ggra9399.t1|Name=Ggra9399.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=669bp
MTASREPSSSRTRPTSRRSGRRSGAPPVDSASPNQRTNPSNNTRARSSPR
GVGTDNGYQSSARYPRPSPYRKGRRTSRAKANGHPPHESPPGSAPHPSSD
RTGRRNSEAKANAYPLPALPLKPDCVPHLPFDLSEKPQHSFVSDASRVTS
KLFDALVNNRVGVCDAHIHTKENLCVPISRSVLTALNSYLADYACPNTSS
GANCSTATHVKSVPISSQQLRHILEFIYTNDCSFIRNLRSSVLWRKDNDV
PPTAVVDVIQLAYAAHICHTPDLSTWCEKTALAIVRHRPTFLCSALNTVM
NFPTTNADSLIDLWMSRVFEQPAHFLGSMQKESSPFEAHASTEELRCSVL
ELDANAFAMILKTCHGNDEYFFRAVYCWATRGYTEFSKAGPRWRNAIKLA
RRIDFTNVSTKFLLGFVDTSGLVDQESMFSIYRSHLAAKSNLPPSYGLQR
VNENTRKRKSDTKDHIVNHETNTPQKKQRVDSGQATASNKLTHDASLGTT
SVQTHQSRPPYPAPAQDEMLEDDADGNSLALPVSLTPVHQNQTSVTAIEA
PHTREYSAPASFPQNSSLVHGEGGVDQNVVHGSEGQITHSETPQTSTHSN
GASLLEQTPLASMPQLAKNDVVRDVSGADSQYEQMTACPASRVKPVSTKV
KEEDVQRKVKEEYEIIGA*

mRNA from alignment at tig00000883_pilon:353956..355962-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9399.t1 ID=Ggra9399.t1|Name=Ggra9399.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2007bp|location=Sequence derived from alignment at tig00000883_pilon:353956..355962- (Gracilaria gracilis GNS1m male)
ATGACTGCTTCTAGAGAACCGTCATCCAGTCGCACAAGGCCCACAAGCAG
GAGATCCGGTCGACGTTCTGGAGCGCCGCCAGTCGACAGTGCCTCGCCTA
ATCAACGTACAAACCCTTCCAATAACACACGTGCCCGATCTTCCCCCAGA
GGTGTGGGAACTGACAATGGTTATCAATCTTCCGCCCGTTACCCACGCCC
CTCACCTTATAGAAAGGGCCGACGGACCAGTAGAGCCAAAGCCAACGGTC
ATCCGCCCCATGAATCCCCTCCAGGGAGTGCACCACACCCGTCGTCTGAC
AGGACGGGCAGAAGGAACAGCGAAGCTAAAGCCAATGCTTATCCGCTTCC
CGCGCTTCCGCTAAAACCTGACTGCGTCCCCCATTTACCATTTGACCTGT
CCGAGAAACCACAGCATTCGTTTGTTTCGGATGCGTCTCGGGTCACATCA
AAGCTGTTTGATGCTTTGGTGAACAATCGCGTCGGTGTGTGTGATGCCCA
TATACACACCAAAGAGAACCTCTGTGTTCCTATTTCTCGCTCAGTACTCA
CCGCCCTCAACTCCTACTTGGCTGACTACGCATGCCCCAATACTAGCAGC
GGCGCAAACTGTTCCACCGCCACTCACGTTAAATCCGTTCCGATAAGCTC
ACAGCAGCTCCGACACATTCTTGAATTTATCTACACCAATGATTGCTCTT
TCATTCGAAACCTACGCTCCTCTGTGTTGTGGAGAAAGGACAATGACGTC
CCACCCACTGCAGTCGTTGACGTCATTCAGCTGGCATATGCTGCCCACAT
TTGCCACACTCCAGACCTCTCGACATGGTGCGAGAAAACTGCGTTGGCTA
TTGTGCGTCATCGACCAACTTTCCTTTGCTCCGCGTTGAATACCGTTATG
AACTTCCCAACCACAAACGCAGATTCCCTCATTGACCTGTGGATGTCGCG
CGTGTTTGAGCAACCAGCACATTTTCTCGGCTCCATGCAGAAGGAAAGTT
CCCCATTCGAAGCACATGCCTCCACCGAAGAGTTACGTTGCTCAGTTTTG
GAACTTGATGCGAATGCTTTTGCCATGATATTGAAGACGTGCCACGGTAA
TGACGAATACTTCTTTCGCGCCGTCTATTGCTGGGCGACTCGTGGCTACA
CCGAATTCAGCAAAGCCGGCCCGCGCTGGAGAAATGCCATCAAGCTCGCC
CGTCGCATTGACTTCACCAATGTGTCGACAAAGTTCTTGCTTGGTTTTGT
AGACACCTCGGGGCTCGTCGATCAGGAGAGCATGTTTTCGATCTACCGTT
CACATCTAGCTGCGAAATCTAATTTGCCACCAAGCTATGGTCTGCAGCGC
GTGAACGAAAACACCCGAAAAAGGAAGAGTGACACCAAAGATCACATCGT
GAATCACGAGACTAATACACCTCAGAAGAAGCAACGAGTTGATTCTGGAC
AAGCAACTGCATCGAATAAGCTCACCCATGATGCGTCACTCGGAACCACT
TCAGTACAAACACATCAAAGCAGACCTCCTTACCCTGCACCTGCACAAGA
TGAGATGCTTGAAGACGACGCCGATGGTAACAGCCTCGCACTTCCTGTGT
CTCTGACCCCAGTGCATCAAAATCAGACTAGCGTGACTGCTATTGAAGCC
CCTCATACCAGGGAATACTCTGCACCAGCGTCTTTCCCGCAGAATTCTTC
ATTAGTTCATGGTGAAGGCGGAGTTGATCAGAACGTTGTTCATGGCTCTG
AGGGTCAGATAACGCACAGCGAAACTCCCCAAACATCAACGCATTCAAAC
GGAGCATCATTGCTAGAACAGACACCCCTGGCATCTATGCCTCAGCTCGC
CAAAAATGATGTCGTTCGGGACGTCAGTGGGGCTGATTCTCAATATGAAC
AGATGACTGCATGTCCAGCCTCAAGAGTTAAGCCTGTTTCCACGAAAGTT
AAGGAAGAAGATGTTCAACGGAAAGTGAAAGAAGAATATGAGATTATTGG
CGCGTAA

Coding sequence (CDS) from alignment at tig00000883_pilon:353956..355962-

>Ggra9399.t1 ID=Ggra9399.t1|Name=Ggra9399.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2007bp|location=Sequence derived from alignment at tig00000883_pilon:353956..355962- (Gracilaria gracilis GNS1m male)
ATGACTGCTTCTAGAGAACCGTCATCCAGTCGCACAAGGCCCACAAGCAG
GAGATCCGGTCGACGTTCTGGAGCGCCGCCAGTCGACAGTGCCTCGCCTA
ATCAACGTACAAACCCTTCCAATAACACACGTGCCCGATCTTCCCCCAGA
GGTGTGGGAACTGACAATGGTTATCAATCTTCCGCCCGTTACCCACGCCC
CTCACCTTATAGAAAGGGCCGACGGACCAGTAGAGCCAAAGCCAACGGTC
ATCCGCCCCATGAATCCCCTCCAGGGAGTGCACCACACCCGTCGTCTGAC
AGGACGGGCAGAAGGAACAGCGAAGCTAAAGCCAATGCTTATCCGCTTCC
CGCGCTTCCGCTAAAACCTGACTGCGTCCCCCATTTACCATTTGACCTGT
CCGAGAAACCACAGCATTCGTTTGTTTCGGATGCGTCTCGGGTCACATCA
AAGCTGTTTGATGCTTTGGTGAACAATCGCGTCGGTGTGTGTGATGCCCA
TATACACACCAAAGAGAACCTCTGTGTTCCTATTTCTCGCTCAGTACTCA
CCGCCCTCAACTCCTACTTGGCTGACTACGCATGCCCCAATACTAGCAGC
GGCGCAAACTGTTCCACCGCCACTCACGTTAAATCCGTTCCGATAAGCTC
ACAGCAGCTCCGACACATTCTTGAATTTATCTACACCAATGATTGCTCTT
TCATTCGAAACCTACGCTCCTCTGTGTTGTGGAGAAAGGACAATGACGTC
CCACCCACTGCAGTCGTTGACGTCATTCAGCTGGCATATGCTGCCCACAT
TTGCCACACTCCAGACCTCTCGACATGGTGCGAGAAAACTGCGTTGGCTA
TTGTGCGTCATCGACCAACTTTCCTTTGCTCCGCGTTGAATACCGTTATG
AACTTCCCAACCACAAACGCAGATTCCCTCATTGACCTGTGGATGTCGCG
CGTGTTTGAGCAACCAGCACATTTTCTCGGCTCCATGCAGAAGGAAAGTT
CCCCATTCGAAGCACATGCCTCCACCGAAGAGTTACGTTGCTCAGTTTTG
GAACTTGATGCGAATGCTTTTGCCATGATATTGAAGACGTGCCACGGTAA
TGACGAATACTTCTTTCGCGCCGTCTATTGCTGGGCGACTCGTGGCTACA
CCGAATTCAGCAAAGCCGGCCCGCGCTGGAGAAATGCCATCAAGCTCGCC
CGTCGCATTGACTTCACCAATGTGTCGACAAAGTTCTTGCTTGGTTTTGT
AGACACCTCGGGGCTCGTCGATCAGGAGAGCATGTTTTCGATCTACCGTT
CACATCTAGCTGCGAAATCTAATTTGCCACCAAGCTATGGTCTGCAGCGC
GTGAACGAAAACACCCGAAAAAGGAAGAGTGACACCAAAGATCACATCGT
GAATCACGAGACTAATACACCTCAGAAGAAGCAACGAGTTGATTCTGGAC
AAGCAACTGCATCGAATAAGCTCACCCATGATGCGTCACTCGGAACCACT
TCAGTACAAACACATCAAAGCAGACCTCCTTACCCTGCACCTGCACAAGA
TGAGATGCTTGAAGACGACGCCGATGGTAACAGCCTCGCACTTCCTGTGT
CTCTGACCCCAGTGCATCAAAATCAGACTAGCGTGACTGCTATTGAAGCC
CCTCATACCAGGGAATACTCTGCACCAGCGTCTTTCCCGCAGAATTCTTC
ATTAGTTCATGGTGAAGGCGGAGTTGATCAGAACGTTGTTCATGGCTCTG
AGGGTCAGATAACGCACAGCGAAACTCCCCAAACATCAACGCATTCAAAC
GGAGCATCATTGCTAGAACAGACACCCCTGGCATCTATGCCTCAGCTCGC
CAAAAATGATGTCGTTCGGGACGTCAGTGGGGCTGATTCTCAATATGAAC
AGATGACTGCATGTCCAGCCTCAAGAGTTAAGCCTGTTTCCACGAAAGTT
AAGGAAGAAGATGTTCAACGGAAAGTGAAAGAAGAATATGAGATTATTGG
CGCGTAA