Ggra4215.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4215.t1
Unique NameGgra4215.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length166
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:92363..92903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2325.TKV_c12810
Preferred nameynbB
PFAMsMet_gamma_lyase
Max annot lvl186801|Clostridia
Evalue1.3e-32
EggNOG OGsCOG4100@1|root,COG4100@2|Bacteria,1TQ88@1239|Firmicutes,247Y4@186801|Clostridia,42FHI@68295|Thermoanaerobacterales
DescriptionPFAM Aluminium resistance family protein
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4215Ggra4215Gracilaria gracilis GNS1m malegenetig00000880_pilon 92363..92903 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4215.t1Ggra4215.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 92363..92903 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4215.t1.start1Ggra4215.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 92363..92365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4215.t1.CDS1Ggra4215.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 92363..92472 +
Ggra4215.t1.CDS2Ggra4215.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000880_pilon 92516..92903 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4215.t1.exon1Ggra4215.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 92363..92472 +
Ggra4215.t1.exon2Ggra4215.t1.exon2Gracilaria gracilis GNS1m maleexontig00000880_pilon 92516..92903 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4215.t1.intron1Ggra4215.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000880_pilon 92473..92515 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4215.t1.stop1Ggra4215.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 92901..92903 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4215.t1 ID=Ggra4215.t1|Name=Ggra4215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=166bp
MDFGITYSEVDLKDGEVNFDGIGDKMNDRTKVVFIQKYNSDVARIVKLAK
ALKSGVVVVDNCFSELCEATEATDDSIGADMAAGSLIKGIGGGGISPSGG
YIVGRKQLVQQARWRLFAAGVESGASLGLTKTLAQALFMAPCNTAQSLKS
SALIAETMWQLGYDS*
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spliced messenger RNA

>Ggra4215.t1 ID=Ggra4215.t1|Name=Ggra4215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=498bp|location=Sequence derived from alignment at tig00000880_pilon:92363..92903+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACTTTGGCATCACGTACAGTGAAGTGGATCTGAAGGACGGCGAGGT
GAACTTTGACGGCATCGGCGACAAAATGAATGATCGAACCAAAGTGGTGT
TCATCCAAAAGTACAACTCGGACGTGGCACGCATCGTGAAGCTGGCAAAA
GCGCTCAAGAGCGGCGTGGTGGTGGTGGACAACTGCTTCAGCGAGCTGTG
CGAAGCGACCGAAGCCACGGACGACAGCATCGGGGCGGACATGGCAGCCG
GGTCGCTGATCAAAGGCATCGGCGGCGGCGGAATCAGCCCCAGCGGCGGC
TACATCGTCGGGCGCAAGCAGCTGGTGCAGCAAGCCAGGTGGCGGCTGTT
CGCGGCGGGCGTGGAGAGCGGCGCGTCGCTCGGACTGACGAAGACGCTGG
CGCAAGCGCTGTTCATGGCGCCGTGCAACACCGCGCAATCGCTCAAGTCC
AGCGCGCTGATCGCGGAAACGATGTGGCAGCTGGGCTACGACTCGTAG
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protein sequence of Ggra4215.t1

>Ggra4215.t1 ID=Ggra4215.t1|Name=Ggra4215.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=166bp
MDFGITYSEVDLKDGEVNFDGIGDKMNDRTKVVFIQKYNSDVARIVKLAK
ALKSGVVVVDNCFSELCEATEATDDSIGADMAAGSLIKGIGGGGISPSGG
YIVGRKQLVQQARWRLFAAGVESGASLGLTKTLAQALFMAPCNTAQSLKS
SALIAETMWQLGYDS*
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mRNA from alignment at tig00000880_pilon:92363..92903+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4215.t1 ID=Ggra4215.t1|Name=Ggra4215.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=541bp|location=Sequence derived from alignment at tig00000880_pilon:92363..92903+ (Gracilaria gracilis GNS1m male)
ATGGACTTTGGCATCACGTACAGTGAAGTGGATCTGAAGGACGGCGAGGT
GAACTTTGACGGCATCGGCGACAAAATGAATGATCGAACCAAAGTGGTGT
TCATCCAAAAGTGATTCGGTTACAGCTGGAGACAGCCGGTGTATCTACAG
TAGGTACAACTCGGACGTGGCACGCATCGTGAAGCTGGCAAAAGCGCTCA
AGAGCGGCGTGGTGGTGGTGGACAACTGCTTCAGCGAGCTGTGCGAAGCG
ACCGAAGCCACGGACGACAGCATCGGGGCGGACATGGCAGCCGGGTCGCT
GATCAAAGGCATCGGCGGCGGCGGAATCAGCCCCAGCGGCGGCTACATCG
TCGGGCGCAAGCAGCTGGTGCAGCAAGCCAGGTGGCGGCTGTTCGCGGCG
GGCGTGGAGAGCGGCGCGTCGCTCGGACTGACGAAGACGCTGGCGCAAGC
GCTGTTCATGGCGCCGTGCAACACCGCGCAATCGCTCAAGTCCAGCGCGC
TGATCGCGGAAACGATGTGGCAGCTGGGCTACGACTCGTAG
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Coding sequence (CDS) from alignment at tig00000880_pilon:92363..92903+

>Ggra4215.t1 ID=Ggra4215.t1|Name=Ggra4215.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=498bp|location=Sequence derived from alignment at tig00000880_pilon:92363..92903+ (Gracilaria gracilis GNS1m male)
ATGGACTTTGGCATCACGTACAGTGAAGTGGATCTGAAGGACGGCGAGGT
GAACTTTGACGGCATCGGCGACAAAATGAATGATCGAACCAAAGTGGTGT
TCATCCAAAAGTACAACTCGGACGTGGCACGCATCGTGAAGCTGGCAAAA
GCGCTCAAGAGCGGCGTGGTGGTGGTGGACAACTGCTTCAGCGAGCTGTG
CGAAGCGACCGAAGCCACGGACGACAGCATCGGGGCGGACATGGCAGCCG
GGTCGCTGATCAAAGGCATCGGCGGCGGCGGAATCAGCCCCAGCGGCGGC
TACATCGTCGGGCGCAAGCAGCTGGTGCAGCAAGCCAGGTGGCGGCTGTT
CGCGGCGGGCGTGGAGAGCGGCGCGTCGCTCGGACTGACGAAGACGCTGG
CGCAAGCGCTGTTCATGGCGCCGTGCAACACCGCGCAATCGCTCAAGTCC
AGCGCGCTGATCGCGGAAACGATGTGGCAGCTGGGCTACGACTCGTAG
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