Ggra4221.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4221.t1
Unique NameGgra4221.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length232
Homology
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A2V3IG78 (Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IG78_9FLOR)

HSP 1 Score: 323 bits (828), Expect = 5.420e-109
Identity = 158/229 (69.00%), Postives = 195/229 (85.15%), Query Frame = 0
Query:    3 CSTTGIPSSSSESKQPSPPPKTPNGRPKPPERGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQEWADFVLAPFSRGDRKIMEEVEWHVMEAIDFWVQEPSLEKVQNQIALTKQKR 231
            C+T+  PS S+ +  PSP  K  N RP PPERG+ LLVVGLGNPGPRF+NTRHNV F+LLDQYA RH+A KFR+E+ VQG++ARFHL+++ +MLLKP+TFMNASGRAVRAALKY++APVAA+LVV DD+SL +GD+RLRAKGSAGGHNGLKSIQQ VG M+  RLR+GVGSP  GA++WADFVL  FSR +++++++VEW VMEAID+WV E S+EKVQ QIAL KQ+R
Sbjct:   41 CTTSPTPSPSNATANPSPLIKQRNSRPPPPERGNKLLVVGLGNPGPRFDNTRHNVGFTLLDQYAARHSASKFRRESSVQGDVARFHLHDRSVMLLKPSTFMNASGRAVRAALKYIDAPVAALLVVTDDISLDLGDIRLRAKGSAGGHNGLKSIQQCVGGMNYARLRIGVGSPSRGAEDWADFVLGSFSRSEKQVLDKVEWDVMEAIDYWVDEASIEKVQTQIALAKQRR 269          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A7S0ZE14 (Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZE14_9RHOD)

HSP 1 Score: 167 bits (422), Expect = 2.770e-47
Identity = 87/190 (45.79%), Postives = 127/190 (66.84%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKK---IMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQEWADFVLAPFSRGDRKIMEEVEWHVMEAIDFWVQEPSLEKV 220
            RG  LLVVGLGNPG  +E TRHNV F  LD +A R  A KF+ E+     I+  +L + K   + L+KP+T+MN SG++V+A  K+   P +A+LVVVD++++  G +RLR KGSAGGHNGLKSIQQ++G     RLR+G+G P    ++ A+FVLA F+R ++K ++ V    M+ ++ WV+  +  +V
Sbjct:   96 RGSKLLVVGLGNPGKEYEMTRHNVGFQFLDIWAARLNASKFKVESKYSALISEVNLNDSKNTQVFLMKPSTYMNLSGQSVKAFCKFHKIPSSAVLVVVDEVNVDFGKVRLREKGSAGGHNGLKSIQQSLGTQEYPRLRIGLGRPNH-REDLANFVLAKFTRSEQKDIQNVYIDCMDILEEWVRNENFSQV 284          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A7S3ACE0 (Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ACE0_9RHOD)

HSP 1 Score: 163 bits (413), Expect = 8.760e-47
Identity = 83/191 (43.46%), Postives = 117/191 (61.26%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQEWADFVLAPFSRGDRKIMEEVEWHVMEAIDFWVQEPSLEKVQNQI 224
            RG  L V+GLGNPG  F +TRHNV F +++ +A RH  G  +       E+    L NK +ML+KP TFMN SG +VR  + +   P  A+L+V DD+ L +G +RLRAKGS+GGHNGLK I++++G     RL+VGVG P     +  D+VL  F R +   ++++ W  +E ID WV+   L KV N +
Sbjct:   32 RGSRLAVIGLGNPGNEFRSTRHNVGFDIIEAFAQRHG-GNMKMAQKYLAEMCEIKLENKTVMLVKPMTFMNLSGTSVRKIVDFYKLPHDAILIVADDIYLELGRVRLRAKGSSGGHNGLKHIEKSLGTQIYPRLKVGVGGPN--KADLKDYVLGKFKRSEVDAVDDMLWTCVELIDEWVKNADLSKVVNNV 219          
BLAST of Ggra4221.t1 vs. uniprot
Match: PTH (Peptidyl-tRNA hydrolase n=10 Tax=Synechococcales TaxID=1890424 RepID=PTH_SYNS3)

HSP 1 Score: 160 bits (404), Expect = 1.170e-45
Identity = 85/180 (47.22%), Postives = 116/180 (64.44%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQE----WADFVLAPFSRGDRKIMEEVEWHVMEAID 209
            RGD  LVVGLGNPG R+ NTRHNV F  L++ A R   G FR    +QG++A     +K++ LL P TFMN SGR++RAAL +    +  +LV+VDDM LP+G LRLRA+GSAGGHNGLKS  Q++G     RLR+G+G+P     E        VL  FSR +  ++++V   V++ ++
Sbjct:    3 RGDLRLVVGLGNPGNRYANTRHNVGFMALERLASREGGG-FRSMPKLQGQLADLGSGDKRLRLLMPQTFMNDSGRSIRAALDWFGFELHQLLVLVDDMDLPLGRLRLRARGSAGGHNGLKSTIQHLGTQDFARLRIGIGAPGQNPSERKARTVSHVLGSFSRDEEPLLDKVLLEVVDGLE 181          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A2E0KEA9 (Peptidyl-tRNA hydrolase n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A2E0KEA9_9SYNE)

HSP 1 Score: 159 bits (403), Expect = 1.600e-45
Identity = 87/196 (44.39%), Postives = 124/196 (63.27%), Query Frame = 0
Query:   33 ERGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQE----WADFVLAPFSRGDRKIMEEVEWHVMEAIDFWVQEPSLEKVQNQI 224
            + GD  LVVGLGNPG R+  TRHNV F  L+ +A R    +FR    +QGE+A   L + ++ LL P T+MN SGR++RAAL + +  V  +LV+VDDM LP+G LRLRAKGSAGGHNGLKS  Q++G     RLR+G+G+P   A+E        VL  F + ++ +++EV   V+  +   +Q+  L++  N +
Sbjct:    2 QSGDLRLVVGLGNPGKRYAGTRHNVGFMALETWAQRENV-RFRTMTKLQGELAEVGLGSNRLRLLMPQTYMNESGRSIRAALDWFDLSVDQVLVLVDDMDLPLGRLRLRAKGSAGGHNGLKSTIQHLGTQDFARLRIGIGAPGRSAEERRARTVSHVLGSFHQAEQTLLDEVLEEVLRGLVL-IQKQGLDRAGNHL 195          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A4R0QV99 (Peptidyl-tRNA hydrolase n=3 Tax=unclassified Synechococcus TaxID=2626047 RepID=A0A4R0QV99_9SYNE)

HSP 1 Score: 159 bits (401), Expect = 3.110e-45
Identity = 89/196 (45.41%), Postives = 122/196 (62.24%), Query Frame = 0
Query:   33 ERGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQE----WADFVLAPFSRGDRKIMEEVEWHVMEAIDFWVQEPSLEKVQNQI 224
            +RG   LVVGLGNPG R+  TRHNV F  L+    R    +FR    + GE+A   L  +++ LL P TFMN SGRA+RAAL + +  V  +LVVVDDM LP+G LRLRAKGSAGGHNGL+S  Q++G     RL++G+G+P    +E        VL  FS+ ++ ++E V   V++ +D  +Q   LE+  NQ+
Sbjct:    2 DRGQLRLVVGLGNPGDRYAGTRHNVGFMALEAMTRREGT-RFRSMPKLHGELAELGLGAERLRLLMPQTFMNDSGRAIRAALDWFDLDVNQLLVVVDDMDLPLGRLRLRAKGSAGGHNGLRSTIQHLGTQDFARLKIGIGAPGRTPEERRARTVSHVLGSFSKEEQPLLETVLDAVLKGLDL-IQRQGLERAGNQL 195          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A7V3RNT9 (Peptidyl-tRNA hydrolase n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7V3RNT9_9BACT)

HSP 1 Score: 158 bits (399), Expect = 3.630e-45
Identity = 81/173 (46.82%), Postives = 114/173 (65.90%), Query Frame = 0
Query:   39 LVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQEWADFVLAPFSRGDRKIMEEVEWHVMEAIDFW 211
            +VVGLGNPG R+E TRHNV F+++D  A    AG+F+     Q +++  +    KI+L+KP TFMN SGR VRA + +   P+A +LVV DD++LP+G LR+RAKG+ GGHNGL+ IQ ++G     RLR+GVG+PR  A    D VL  FS  +R ++EE     ++A+  W
Sbjct:    3 VVVGLGNPGKRYEGTRHNVGFAVIDNLAASPRAGRFQTR--FQAQVSELNDEVGKILLVKPETFMNLSGRCVRAIVDFYQLPLADLLVVCDDINLPLGKLRVRAKGTHGGHNGLRDIQDHLGTTEYARLRIGVGAPRDDA---VDHVLGRFSPSERPVIEEAIALAVQAVLTW 170          
BLAST of Ggra4221.t1 vs. uniprot
Match: Q05QQ7 (Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. RS9916 TaxID=221359 RepID=Q05QQ7_9SYNE)

HSP 1 Score: 156 bits (395), Expect = 2.560e-44
Identity = 85/196 (43.37%), Postives = 124/196 (63.27%), Query Frame = 0
Query:   33 ERGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQE----WADFVLAPFSRGDRKIMEEVEWHVMEAIDFWVQEPSLEKVQNQI 224
            + GD  L+VGLGNPG R+  TRHNV F  L+  A   +A +F+    +QGE+A   + + ++ LL P TFMN SGR++RAAL + +     +LV+VDDM LP+G LRLRAKGSAGGHNGLKS  Q++G     RLR+G+G+P   A+E        VL  F + ++ ++++V   V+  +D  +Q   LE+  N++
Sbjct:    2 QSGDLRLLVGLGNPGQRYAGTRHNVGFMALEALASGESA-RFKAMAKLQGELAEVGVGSNRLRLLMPQTFMNESGRSIRAALDWFDLSSDQVLVLVDDMDLPLGRLRLRAKGSAGGHNGLKSTIQHLGTQEFARLRIGIGAPGRSAEERRARTVSHVLGSFHQAEQSLLKDVLDEVLRGVDL-IQRQGLERAGNRL 195          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A2E9J107 (Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. NP17 TaxID=2024885 RepID=A0A2E9J107_9SYNE)

HSP 1 Score: 156 bits (395), Expect = 2.640e-44
Identity = 83/180 (46.11%), Postives = 113/180 (62.78%), Query Frame = 0
Query:   34 RGDTLLVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQE----WADFVLAPFSRGDRKIMEEVEWHVMEAID 209
            RGD  LVVGLGNPG R+ NTRHNV F +L++   R   G FR    +QG++A   L   ++ LL P T+MN SGR++RAAL +     + MLV+VDDM LP+G LRLR+KGSAGGHNGLKS  Q++G     RLR+G+G+P     E        VL  FS  +  ++ +V   V++ ++
Sbjct:    3 RGDLRLVVGLGNPGNRYANTRHNVGFMVLERLVARDG-GNFRSMPKLQGQLAEKGLGESRLRLLMPQTYMNESGRSIRAALDWFGFEASQMLVLVDDMDLPLGRLRLRSKGSAGGHNGLKSTIQHLGNQDFARLRIGIGAPGQNPSERRARTVSHVLGRFSNEEEPLLTKVLSEVVDGLE 181          
BLAST of Ggra4221.t1 vs. uniprot
Match: A0A7V6RKH8 (Peptidyl-tRNA hydrolase n=1 Tax=Syntrophomonadaceae bacterium TaxID=2093811 RepID=A0A7V6RKH8_9FIRM)

HSP 1 Score: 155 bits (391), Expect = 5.490e-44
Identity = 73/174 (41.95%), Postives = 115/174 (66.09%), Query Frame = 0
Query:   39 LVVGLGNPGPRFENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPTTFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHNGLKSIQQNVGEMSQVRLRVGVGSPRFGAQEWADFVLAPFSRGDRKIMEEVEWHVMEAIDFWV 212
            +VVGLGNPGP +++TRHNV F ++++ A RH+    R+E      IA  H+  +K++L+KP T+MN SGRAV+A +++  A +  ++++ DDM LP+G LRLR +G  GGH GL SIQQ++G     RLR+G+G P +   +  D+VL+ F R +++++        +AI+ WV
Sbjct:    3 IVVGLGNPGPNYKDTRHNVGFMVVEELARRHSVE--RQEQKFDAIIAHTHINQEKVLLIKPLTYMNLSGRAVQAVVRFFKADLDELMIIYDDMDLPVGTLRLRPQGGTGGHKGLMSIQQSLGTQDFPRLRIGIGRPHY--HDPVDWVLSKFQREEKELITAAINQAADAIESWV 172          
The following BLAST results are available for this feature:
BLAST of Ggra4221.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IG785.420e-10969.00Peptidyl-tRNA hydrolase n=1 Tax=Gracilariopsis cho... [more]
A0A7S0ZE142.770e-4745.79Peptidyl-tRNA hydrolase n=1 Tax=Timspurckia oligop... [more]
A0A7S3ACE08.760e-4743.46Peptidyl-tRNA hydrolase n=2 Tax=Rhodosorus marinus... [more]
PTH1.170e-4547.22Peptidyl-tRNA hydrolase n=10 Tax=Synechococcales T... [more]
A0A2E0KEA91.600e-4544.39Peptidyl-tRNA hydrolase n=2 Tax=unclassified Synec... [more]
A0A4R0QV993.110e-4545.41Peptidyl-tRNA hydrolase n=3 Tax=unclassified Synec... [more]
A0A7V3RNT93.630e-4546.82Peptidyl-tRNA hydrolase n=1 Tax=Gemmataceae bacter... [more]
Q05QQ72.560e-4443.37Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. ... [more]
A0A2E9J1072.640e-4446.11Peptidyl-tRNA hydrolase n=1 Tax=Synechococcus sp. ... [more]
A0A7V6RKH85.490e-4441.95Peptidyl-tRNA hydrolase n=1 Tax=Syntrophomonadacea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001328Peptidyl-tRNA hydrolasePFAMPF01195Pept_tRNA_hydrocoord: 39..224
e-value: 7.6E-53
score: 179.0
IPR001328Peptidyl-tRNA hydrolaseTIGRFAMTIGR00447TIGR00447coord: 38..224
e-value: 1.8E-49
score: 166.0
IPR001328Peptidyl-tRNA hydrolasePANTHERPTHR17224PEPTIDYL-TRNA HYDROLASEcoord: 11..221
IPR001328Peptidyl-tRNA hydrolaseHAMAPMF_00083Pept_tRNA_hydro_bactcoord: 37..217
score: 30.711599
IPR001328Peptidyl-tRNA hydrolaseCDDcd00462PTHcoord: 39..212
e-value: 1.03535E-67
score: 204.245
IPR036416Peptidyl-tRNA hydrolase superfamilyGENE3D3.40.50.1470coord: 35..231
e-value: 3.4E-57
score: 195.2
IPR036416Peptidyl-tRNA hydrolase superfamilySUPERFAMILY53178Peptidyl-tRNA hydrolase-likecoord: 38..222
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..35
NoneNo IPR availablePANTHERPTHR17224:SF1PEPTIDYL-TRNA HYDROLASE-RELATEDcoord: 11..221
IPR018171Peptidyl-tRNA hydrolase, conserved sitePROSITEPS01196PEPT_TRNA_HYDROL_2coord: 145..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:163983..164678 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4221.t1Ggra4221.t1Gracilaria gracilis GNS1m malemRNAtig00000880_pilon 163983..164678 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4221.t1 ID=Ggra4221.t1|Name=Ggra4221.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=232bp
MRCSTTGIPSSSSESKQPSPPPKTPNGRPKPPERGDTLLVVGLGNPGPRF
ENTRHNVSFSLLDQYAVRHAAGKFRKENIVQGEIARFHLYNKKIMLLKPT
TFMNASGRAVRAALKYLNAPVAAMLVVVDDMSLPIGDLRLRAKGSAGGHN
GLKSIQQNVGEMSQVRLRVGVGSPRFGAQEWADFVLAPFSRGDRKIMEEV
EWHVMEAIDFWVQEPSLEKVQNQIALTKQKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001328Pept_tRNA_hydro
IPR036416Pept_tRNA_hydro_sf
IPR018171Pept_tRNA_hydro_CS