Ggra4261.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4261.t1
Unique NameGgra4261.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length298
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000880_piloncontigtig00000880_pilon:469834..470727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4261Ggra4261Gracilaria gracilis GNS1m malegenetig00000880_pilon 469834..470727 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4261.t1.start1Ggra4261.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000880_pilon 469834..469836 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4261.t1.CDS1Ggra4261.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000880_pilon 469834..470727 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4261.t1.exon1Ggra4261.t1.exon1Gracilaria gracilis GNS1m maleexontig00000880_pilon 469834..470727 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4261.t1.stop1Ggra4261.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000880_pilon 470725..470727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4261.t1Ggra4261.t1Gracilaria gracilis GNS1m malepolypeptidetig00000880_pilon 469834..470727 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4261.t1 ID=Ggra4261.t1|Name=Ggra4261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=298bp
MDNALPLPPFVPADLSSCVPISAMLNAAMVEPPCGAAAAAVTPSAPCELP
EPPSPRWPDLDLLELIIPSASSACSSPAWPPPPPPPPPQQQQQHVPLPPP
APPTPPSPAPPLALPALCGAALPALPSLARAGALAWSPVSERGASASARS
RSPAGATTATAAAASRIHKQTRRYTVPKSSRYCHLCARHQRSVGMVACGN
VALGLCQKSVCIKCIATYALNVRLPNWSCPHCCNNCPRRAKCFSYDRQTA
RRRERSLRAKLSAGAPVSQQPALPQPQQPKVQLQQERSTLSTNYKCV*
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spliced messenger RNA

>Ggra4261.t1 ID=Ggra4261.t1|Name=Ggra4261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000880_pilon:469834..470727+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACGCGCTGCCGCTGCCGCCCTTCGTGCCGGCCGATCTGTCGTC
ATGCGTGCCAATCTCCGCCATGCTCAACGCGGCAATGGTGGAgccgccat
gcggcgccgccgcagccgccgtcacgccatcggcgccgTGCGAGCTACCC
GAGCCGCCCTCGCCGCGCTGGCCCGACCTGGACCTGCTGGAGCTCATCAT
TCCGTCCGCGTCGTCGGCGTGCTCGTCGCCGGCGTGgccgccgccgccgc
cgccgccgccgccgcAGCAGCAGCAGCAGCACGTGCCGCTGCCGCCGCCC
GCGCCGCCCACGCCGCCCTCGCCCGCGCCGCCGCTGGCGCTGCCGGCGCT
GTGCGGCGCGGCGCTGCCGGCGCTGCCGTCGCTGGCGCGCGCCGGCGCGC
TAGCGTGGTCGCCCGTGTCGGAGCGCGGCGCGAGCGCGAGCGCGCGCTCG
CGCTCGCCGGCGGGCGCCACCACGGCCACAGCGGCAGCGGCGTCGCGCAT
CCACAAGCAGACGCGGCGCTACACGGTGCCCAAGAGCTCGCGCTACTGCC
ACCTGTGCGCGCGGCACCAGCGGTCGGTGGGCATGGTGGCGTGCGGCAAC
GTGGCGCTCGGGCTGTGTCAGAAGTCGGTGTGCATCAAGTGCATCGCTAC
GTATGCGCTCAACGTGCGGCTGCCCAACTGGTCGTGCCCGCACTGCTGCA
ATAACTGTCCCAGGCGCGCAAAGTGCTTCTCGTACGACCGACAGACGGCG
CGCCGGAGGGAACGGTCGCTGCGCGCAAAGCTGAGCGCGGGCGCGCCTGT
GTcgcagcagccggcgctgccgcagccgcagcagcccaaggtgcagctgc
aacaAGAGCGTTCGACGTTGTCAACTAACTACAAGTGCGTATAG
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protein sequence of Ggra4261.t1

>Ggra4261.t1 ID=Ggra4261.t1|Name=Ggra4261.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=298bp
MDNALPLPPFVPADLSSCVPISAMLNAAMVEPPCGAAAAAVTPSAPCELP
EPPSPRWPDLDLLELIIPSASSACSSPAWPPPPPPPPPQQQQQHVPLPPP
APPTPPSPAPPLALPALCGAALPALPSLARAGALAWSPVSERGASASARS
RSPAGATTATAAAASRIHKQTRRYTVPKSSRYCHLCARHQRSVGMVACGN
VALGLCQKSVCIKCIATYALNVRLPNWSCPHCCNNCPRRAKCFSYDRQTA
RRRERSLRAKLSAGAPVSQQPALPQPQQPKVQLQQERSTLSTNYKCV*
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mRNA from alignment at tig00000880_pilon:469834..470727+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4261.t1 ID=Ggra4261.t1|Name=Ggra4261.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=894bp|location=Sequence derived from alignment at tig00000880_pilon:469834..470727+ (Gracilaria gracilis GNS1m male)
ATGGACAACGCGCTGCCGCTGCCGCCCTTCGTGCCGGCCGATCTGTCGTC
ATGCGTGCCAATCTCCGCCATGCTCAACGCGGCAATGGTGGAgccgccat
gcggcgccgccgcagccgccgtcacgccatcggcgccgTGCGAGCTACCC
GAGCCGCCCTCGCCGCGCTGGCCCGACCTGGACCTGCTGGAGCTCATCAT
TCCGTCCGCGTCGTCGGCGTGCTCGTCGCCGGCGTGgccgccgccgccgc
cgccgccgccgccgcAGCAGCAGCAGCAGCACGTGCCGCTGCCGCCGCCC
GCGCCGCCCACGCCGCCCTCGCCCGCGCCGCCGCTGGCGCTGCCGGCGCT
GTGCGGCGCGGCGCTGCCGGCGCTGCCGTCGCTGGCGCGCGCCGGCGCGC
TAGCGTGGTCGCCCGTGTCGGAGCGCGGCGCGAGCGCGAGCGCGCGCTCG
CGCTCGCCGGCGGGCGCCACCACGGCCACAGCGGCAGCGGCGTCGCGCAT
CCACAAGCAGACGCGGCGCTACACGGTGCCCAAGAGCTCGCGCTACTGCC
ACCTGTGCGCGCGGCACCAGCGGTCGGTGGGCATGGTGGCGTGCGGCAAC
GTGGCGCTCGGGCTGTGTCAGAAGTCGGTGTGCATCAAGTGCATCGCTAC
GTATGCGCTCAACGTGCGGCTGCCCAACTGGTCGTGCCCGCACTGCTGCA
ATAACTGTCCCAGGCGCGCAAAGTGCTTCTCGTACGACCGACAGACGGCG
CGCCGGAGGGAACGGTCGCTGCGCGCAAAGCTGAGCGCGGGCGCGCCTGT
GTcgcagcagccggcgctgccgcagccgcagcagcccaaggtgcagctgc
aacaAGAGCGTTCGACGTTGTCAACTAACTACAAGTGCGTATAG
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Coding sequence (CDS) from alignment at tig00000880_pilon:469834..470727+

>Ggra4261.t1 ID=Ggra4261.t1|Name=Ggra4261.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=894bp|location=Sequence derived from alignment at tig00000880_pilon:469834..470727+ (Gracilaria gracilis GNS1m male)
ATGGACAACGCGCTGCCGCTGCCGCCCTTCGTGCCGGCCGATCTGTCGTC
ATGCGTGCCAATCTCCGCCATGCTCAACGCGGCAATGGTGGAgccgccat
gcggcgccgccgcagccgccgtcacgccatcggcgccgTGCGAGCTACCC
GAGCCGCCCTCGCCGCGCTGGCCCGACCTGGACCTGCTGGAGCTCATCAT
TCCGTCCGCGTCGTCGGCGTGCTCGTCGCCGGCGTGgccgccgccgccgc
cgccgccgccgccgcAGCAGCAGCAGCAGCACGTGCCGCTGCCGCCGCCC
GCGCCGCCCACGCCGCCCTCGCCCGCGCCGCCGCTGGCGCTGCCGGCGCT
GTGCGGCGCGGCGCTGCCGGCGCTGCCGTCGCTGGCGCGCGCCGGCGCGC
TAGCGTGGTCGCCCGTGTCGGAGCGCGGCGCGAGCGCGAGCGCGCGCTCG
CGCTCGCCGGCGGGCGCCACCACGGCCACAGCGGCAGCGGCGTCGCGCAT
CCACAAGCAGACGCGGCGCTACACGGTGCCCAAGAGCTCGCGCTACTGCC
ACCTGTGCGCGCGGCACCAGCGGTCGGTGGGCATGGTGGCGTGCGGCAAC
GTGGCGCTCGGGCTGTGTCAGAAGTCGGTGTGCATCAAGTGCATCGCTAC
GTATGCGCTCAACGTGCGGCTGCCCAACTGGTCGTGCCCGCACTGCTGCA
ATAACTGTCCCAGGCGCGCAAAGTGCTTCTCGTACGACCGACAGACGGCG
CGCCGGAGGGAACGGTCGCTGCGCGCAAAGCTGAGCGCGGGCGCGCCTGT
GTcgcagcagccggcgctgccgcagccgcagcagcccaaggtgcagctgc
aacaAGAGCGTTCGACGTTGTCAACTAACTACAAGTGCGTATAG
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