Ggra4251.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra4251.t1
Unique Name	Ggra4251.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	491

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000880_pilon	contig	tig00000880_pilon:352450..353922 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra4251	Ggra4251	Gracilaria gracilis GNS1m male	gene	tig00000880_pilon 352450..353922 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4251.t1.start1	Ggra4251.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000880_pilon 352450..352452 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4251.t1.CDS1	Ggra4251.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000880_pilon 352450..353922 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4251.t1.exon1	Ggra4251.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000880_pilon 352450..353922 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4251.t1.stop1	Ggra4251.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000880_pilon 353920..353922 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra4251.t1	Ggra4251.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000880_pilon 352450..353922 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000880_pilon:352450..353922+
coding sequence from alignment at tig00000880_pilon:352450..353922+

mRNA sequence

>Ggra4251.t1 ID=Ggra4251.t1|Name=Ggra4251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=491bp
MELVAPNSSFATEYVDKYLSCSQPGVNENGEWDVHGFYNDKFDDRWNFNL
SENNVSLITASAVSLSLIFFIDIVYRVVVRARYGQVSHQVGLRHRLFQRV
SNPINVLSALFTRFRANQSAPSEDTHSQTQNPRLSKFAFGFVIIMGAMTV
CVEFLFIFLATNQHQVFNLRLDAVPIFEFEDRGCEVLYSPGPIDTCEEVP
LTEKTGFDVRARMQICSLSNIQSSGATSAVFGPHHYQLIITVLDAGSVQT
AVVHRNITSLQRVTIGVFVHNTSSLYMGMQSVSAEELVSVLLNRVERTNV
TVLTNNTAVQLVSAESVAHSKQRRPLSKLSEEKLNAKAISASVLVDASEI
DLLQTHLSVLYIGNNTRDESKRLSHLHIYFQDVMHSIMFPTGKGRGALFD
DKIENPYLDNVSMPLAFYNRPWIGVAPSLAILCALLVVWTVLAALGIDGQ
VDSERGGKEFINRQDTCRIDCLEKGGCKAEEEKATESSTG*

spliced messenger RNA

>Ggra4251.t1 ID=Ggra4251.t1|Name=Ggra4251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000880_pilon:352450..353922+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTCGTCGCTCCAAACTCTTCGTTTGCGACGGAATATGTCGACAA
ATATTTATCTTGTTCGCAACCTGGTGTTAACGAGAATGGCGAATGGGATG
TACATGGTTTCTACAACGACAAGTTTGATGACCGTTGGAACTTTAATCTT
AGCGAGAATAATGTTTCGCTTATCACAGCGTCTGCCGTGTCGCTTTCGCT
CATTTTCTTCATCGACATTGTGTACCGAGTTGTTGTCCGTGCCAGATATG
GTCAAGTCAGTCATCAAGTGGGACTACGACACCGTTTGTTTCAACGCGTG
TCCAACCCGATAAATGTGCTTTCAGCGCTTTTCACAAGATTCAGGGCAAA
CCAGTCAGCTCCCTCTGAAGACACGCATAGCCAGACACAGAATCCTAGAC
TATCAAAGTTCGCGTTCGGTTTCGTGATAATTATGGGAGCGATGACAGTT
TGCGTAGAATTCTTGTTTATTTTCCTTGCCACGAATCAGCACCAAGTTTT
CAATCTGCGTCTTGATGCTGTTCCGATATTTGAGTTTGAAGACCGAGGCT
GTGAAGTCCTTTATTCACCTGGACCTATCGATACTTGTGAAGAAGTCCCT
CTAACAGAAAAGACTGGCTTCGATGTGCGAGCCAGAATGCAAATATGTTC
TCTTTCCAATATACAATCCTCCGGTGCAACCTCTGCTGTTTTCGGACCAC
ATCACTATCAACTAATCATCACCGTGCTTGATGCTGGTTCCGTCCAGACG
GCAGTGGTCCACCGAAATATAACATCACTTCAAAGGGTAACTATAGGAGT
TTTTGTCCACAACACATCCAGCCTTTATATGGGGATGCAAAGCGTGTCTG
CAGAAGAGCTGGTTTCTGTTCTACTGAATCGCGTGGAAAGAACGAACGTT
ACTGTTCTGACAAATAATACGGCGGTTCAGCTTGTGAGCGCGGAATCGGT
CGCTCATAGCAAACAGAGGCGTCCGCTAAGCAAGCTCAGTGAGGAGAAAC
TAAATGCGAAGGCTATAAGTGCTTCGGTTCTAGTTGATGCCAGTGAGATT
GACCTGTTGCAAACCCATCTATCCGTTCTTTATATTGGAAACAATACACG
AGATGAAAGTAAGCGACTAAGCCACCTGCACATATATTTTCAGGACGTAA
TGCATTCCATAATGTTTCCAACCGGCAAAGGACGTGGAGCTCTTTTTGAT
GACAAAATTGAAAATCCATATCTGGACAACGTTTCAATGCCGCTGGCGTT
CTACAACAGACCATGGATTGGAGTGGCACCTAGCCTGGCCATTCTTTGTG
CTTTATTGGTAGTATGGACTGTGCTCGCGGCGCTCGGTATCGACGGGCAG
GTTGACTCAGAACGGGGGGGCAAGGAGTTCATCAACCGACAAGACACATG
CAGGATTGATTGCTTGGAGAAAGGGGGATGTAAAGCAGAAGAAGAAAAAG
CAACTGAATCTAGTACAGGGTAG

protein sequence of Ggra4251.t1

>Ggra4251.t1 ID=Ggra4251.t1|Name=Ggra4251.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=491bp
MELVAPNSSFATEYVDKYLSCSQPGVNENGEWDVHGFYNDKFDDRWNFNL
SENNVSLITASAVSLSLIFFIDIVYRVVVRARYGQVSHQVGLRHRLFQRV
SNPINVLSALFTRFRANQSAPSEDTHSQTQNPRLSKFAFGFVIIMGAMTV
CVEFLFIFLATNQHQVFNLRLDAVPIFEFEDRGCEVLYSPGPIDTCEEVP
LTEKTGFDVRARMQICSLSNIQSSGATSAVFGPHHYQLIITVLDAGSVQT
AVVHRNITSLQRVTIGVFVHNTSSLYMGMQSVSAEELVSVLLNRVERTNV
TVLTNNTAVQLVSAESVAHSKQRRPLSKLSEEKLNAKAISASVLVDASEI
DLLQTHLSVLYIGNNTRDESKRLSHLHIYFQDVMHSIMFPTGKGRGALFD
DKIENPYLDNVSMPLAFYNRPWIGVAPSLAILCALLVVWTVLAALGIDGQ
VDSERGGKEFINRQDTCRIDCLEKGGCKAEEEKATESSTG*

mRNA from alignment at tig00000880_pilon:352450..353922+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra4251.t1 ID=Ggra4251.t1|Name=Ggra4251.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1473bp|location=Sequence derived from alignment at tig00000880_pilon:352450..353922+ (Gracilaria gracilis GNS1m male)
ATGGAGCTCGTCGCTCCAAACTCTTCGTTTGCGACGGAATATGTCGACAA
ATATTTATCTTGTTCGCAACCTGGTGTTAACGAGAATGGCGAATGGGATG
TACATGGTTTCTACAACGACAAGTTTGATGACCGTTGGAACTTTAATCTT
AGCGAGAATAATGTTTCGCTTATCACAGCGTCTGCCGTGTCGCTTTCGCT
CATTTTCTTCATCGACATTGTGTACCGAGTTGTTGTCCGTGCCAGATATG
GTCAAGTCAGTCATCAAGTGGGACTACGACACCGTTTGTTTCAACGCGTG
TCCAACCCGATAAATGTGCTTTCAGCGCTTTTCACAAGATTCAGGGCAAA
CCAGTCAGCTCCCTCTGAAGACACGCATAGCCAGACACAGAATCCTAGAC
TATCAAAGTTCGCGTTCGGTTTCGTGATAATTATGGGAGCGATGACAGTT
TGCGTAGAATTCTTGTTTATTTTCCTTGCCACGAATCAGCACCAAGTTTT
CAATCTGCGTCTTGATGCTGTTCCGATATTTGAGTTTGAAGACCGAGGCT
GTGAAGTCCTTTATTCACCTGGACCTATCGATACTTGTGAAGAAGTCCCT
CTAACAGAAAAGACTGGCTTCGATGTGCGAGCCAGAATGCAAATATGTTC
TCTTTCCAATATACAATCCTCCGGTGCAACCTCTGCTGTTTTCGGACCAC
ATCACTATCAACTAATCATCACCGTGCTTGATGCTGGTTCCGTCCAGACG
GCAGTGGTCCACCGAAATATAACATCACTTCAAAGGGTAACTATAGGAGT
TTTTGTCCACAACACATCCAGCCTTTATATGGGGATGCAAAGCGTGTCTG
CAGAAGAGCTGGTTTCTGTTCTACTGAATCGCGTGGAAAGAACGAACGTT
ACTGTTCTGACAAATAATACGGCGGTTCAGCTTGTGAGCGCGGAATCGGT
CGCTCATAGCAAACAGAGGCGTCCGCTAAGCAAGCTCAGTGAGGAGAAAC
TAAATGCGAAGGCTATAAGTGCTTCGGTTCTAGTTGATGCCAGTGAGATT
GACCTGTTGCAAACCCATCTATCCGTTCTTTATATTGGAAACAATACACG
AGATGAAAGTAAGCGACTAAGCCACCTGCACATATATTTTCAGGACGTAA
TGCATTCCATAATGTTTCCAACCGGCAAAGGACGTGGAGCTCTTTTTGAT
GACAAAATTGAAAATCCATATCTGGACAACGTTTCAATGCCGCTGGCGTT
CTACAACAGACCATGGATTGGAGTGGCACCTAGCCTGGCCATTCTTTGTG
CTTTATTGGTAGTATGGACTGTGCTCGCGGCGCTCGGTATCGACGGGCAG
GTTGACTCAGAACGGGGGGGCAAGGAGTTCATCAACCGACAAGACACATG
CAGGATTGATTGCTTGGAGAAAGGGGGATGTAAAGCAGAAGAAGAAAAAG
CAACTGAATCTAGTACAGGGTAG

Coding sequence (CDS) from alignment at tig00000880_pilon:352450..353922+

>Ggra4251.t1 ID=Ggra4251.t1|Name=Ggra4251.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1473bp|location=Sequence derived from alignment at tig00000880_pilon:352450..353922+ (Gracilaria gracilis GNS1m male)
ATGGAGCTCGTCGCTCCAAACTCTTCGTTTGCGACGGAATATGTCGACAA
ATATTTATCTTGTTCGCAACCTGGTGTTAACGAGAATGGCGAATGGGATG
TACATGGTTTCTACAACGACAAGTTTGATGACCGTTGGAACTTTAATCTT
AGCGAGAATAATGTTTCGCTTATCACAGCGTCTGCCGTGTCGCTTTCGCT
CATTTTCTTCATCGACATTGTGTACCGAGTTGTTGTCCGTGCCAGATATG
GTCAAGTCAGTCATCAAGTGGGACTACGACACCGTTTGTTTCAACGCGTG
TCCAACCCGATAAATGTGCTTTCAGCGCTTTTCACAAGATTCAGGGCAAA
CCAGTCAGCTCCCTCTGAAGACACGCATAGCCAGACACAGAATCCTAGAC
TATCAAAGTTCGCGTTCGGTTTCGTGATAATTATGGGAGCGATGACAGTT
TGCGTAGAATTCTTGTTTATTTTCCTTGCCACGAATCAGCACCAAGTTTT
CAATCTGCGTCTTGATGCTGTTCCGATATTTGAGTTTGAAGACCGAGGCT
GTGAAGTCCTTTATTCACCTGGACCTATCGATACTTGTGAAGAAGTCCCT
CTAACAGAAAAGACTGGCTTCGATGTGCGAGCCAGAATGCAAATATGTTC
TCTTTCCAATATACAATCCTCCGGTGCAACCTCTGCTGTTTTCGGACCAC
ATCACTATCAACTAATCATCACCGTGCTTGATGCTGGTTCCGTCCAGACG
GCAGTGGTCCACCGAAATATAACATCACTTCAAAGGGTAACTATAGGAGT
TTTTGTCCACAACACATCCAGCCTTTATATGGGGATGCAAAGCGTGTCTG
CAGAAGAGCTGGTTTCTGTTCTACTGAATCGCGTGGAAAGAACGAACGTT
ACTGTTCTGACAAATAATACGGCGGTTCAGCTTGTGAGCGCGGAATCGGT
CGCTCATAGCAAACAGAGGCGTCCGCTAAGCAAGCTCAGTGAGGAGAAAC
TAAATGCGAAGGCTATAAGTGCTTCGGTTCTAGTTGATGCCAGTGAGATT
GACCTGTTGCAAACCCATCTATCCGTTCTTTATATTGGAAACAATACACG
AGATGAAAGTAAGCGACTAAGCCACCTGCACATATATTTTCAGGACGTAA
TGCATTCCATAATGTTTCCAACCGGCAAAGGACGTGGAGCTCTTTTTGAT
GACAAAATTGAAAATCCATATCTGGACAACGTTTCAATGCCGCTGGCGTT
CTACAACAGACCATGGATTGGAGTGGCACCTAGCCTGGCCATTCTTTGTG
CTTTATTGGTAGTATGGACTGTGCTCGCGGCGCTCGGTATCGACGGGCAG
GTTGACTCAGAACGGGGGGGCAAGGAGTTCATCAACCGACAAGACACATG
CAGGATTGATTGCTTGGAGAAAGGGGGATGTAAAGCAGAAGAAGAAAAAG
CAACTGAATCTAGTACAGGGTAG