Ggra1022.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1022.t1
Unique NameGgra1022.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length636
Homology
BLAST of Ggra1022.t1 vs. uniprot
Match: A0A2V3IL84 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IL84_9FLOR)

HSP 1 Score: 185 bits (470), Expect = 7.130e-50
Identity = 126/330 (38.18%), Postives = 177/330 (53.64%), Query Frame = 0
Query:  317 HFQSGGSILSIGRTGRNDDALLVEDEQFSLGPTQVVDEFKVSVPMNMSPGEGTVVVDWNLDVFL-GPSGF--DTAGRGVAIFDKWTYVENKVIVEGPLYSIHLVDRLRSPPY---DMGQYSFIRCDLAPQELVLVGAGGASKEVDVNCTVANLQRNVSLARTWETIPVHAEPPRQVDKTYPGLSLSEVGMRSIMVSDLAFVLSLNSCGDSYVAYLPLSEVSRSSIIVILTLGGITFVSVIAAGLSLLITRGTFNWNGSNQRVINLVASSESIEVKSCWHMGTASKADVVIEPTTENLERPTYN-----VHALPRGAASNPVPKANVKMIR 635
            HF +GG IL +GRTG+N DALLVEDE++S G   ++ E  +   +N+S   G   VD N   FL   +G+  D       I    TY+    I EGPLY +  +    +  Y     G+ +  R DL      LV           NC+VA L+R+ + +  +      A   R +D  +  + +S +G  SIM++DLA  L    CGD+YVAYLP S +SR+S++++  LG     S +AA +SL ITR TFNWNGS QRV++L ASSE + V         + ADVVIE      ERPT++     V  +P  A SNPVPKA+ K+++
Sbjct:    2 HFNTGGKILRVGRTGQNLDALLVEDEEYSHGHAHLLKESFIEAKINVSSPRGNYKVDINAWDFLENTTGYPEDLTAHYSTIVRNATYLPTIQITEGPLYFVICIFGHGTENYMKCAFGKCAVPRVDLPYSRFRLVRG---------NCSVAFLERSTAKSGIFRGFEPEASSLRYLDLAFGHVDVSFLGQGSIMINDLAITLQSKPCGDTYVAYLPPSNISRTSVVIVCALGITALASCVAAIMSLFITRHTFNWNGSYQRVVSLAASSEQMRVFGRNDFAAVATADVVIE------ERPTHHGKGLCVRIVPTDATSNPVPKASRKLLQ 316          
BLAST of Ggra1022.t1 vs. uniprot
Match: A0A2V3J1R8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1R8_9FLOR)

HSP 1 Score: 152 bits (383), Expect = 7.320e-37
Identity = 108/303 (35.64%), Postives = 160/303 (52.81%), Query Frame = 0
Query:  275 VSENLDSTTYDVHAIPRGYISNPVRKSFSDTRLGEAAERVKKHFQSGGSILSIGRTGRNDDALLVEDEQFSLGPTQVVDEFKVSVPMNMSPGEGTVVVDWNLDVFLGPSGFDTAGRGVAIFDKWTYVENKV-------------IVEGPLYSIHLVDRLRSPPYDMGQYSFIRCDLAPQELVLVGAGGASKEVDVNCTVANLQRNVSLARTWETIPVHAEPPRQVDKTYPGLSLSEVGMRSIMVSDLAFVLSLNSCGDSYVAYLPLSEVSRSSIIVILTLGGITFVSVIAAGLSLLITRGTFN 564
            +SE+ + + +  H IP G         ++   +G A ERV KHF +GG ++S+G+TGRN DA+L+E+E+ SLG   VVD++ +   +N+S G  +     NL  FL     +T G   +++    ++ + V             IV+GP Y I            M + +F RC +   EL      G    V  NC+VA ++R    A  + +    A P + +D ++ GL +SE+G RS MV DLAF+L    CGD+YVAYLP SEVS  SI +I +LG I+ V  + A +S  ITR TFN
Sbjct:  100 ISESKNLSVHRYHTIP-GEALCYREGLYNSEMIGMATERVIKHFNAGGKVISVGKTGRNHDAILLENERSSLGHAVVVDKWDMEARINVSDGNISTFT-LNLTQFLR----NTTGYLHSVYSNDFFLTHSVVPMNTTPLPNNGAIVDGPFYVIVCTHNPLVNENKMEKCAFSRCAVPHVEL----QPGEVVSVRGNCSVATIERQAFKAGAFRSYYGSASPLKYLDISFKGLDVSELGKRSQMVGDLAFILRSRPCGDTYVAYLPPSEVSWVSIAIICSLGTISLVVSVVAIMSFSITRNTFN 392          
BLAST of Ggra1022.t1 vs. uniprot
Match: A0A2V3IYY8 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYY8_9FLOR)

HSP 1 Score: 81.6 bits (200), Expect = 1.560e-14
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 0
Query:  158 MEKTYPGLTISELGMRSLMVFDLADALSRDPCGNSYVAYLSLSEVSRTTTTIILTLSGITLVSVVAAALSLLFTSGTYNWNGSYQRVINLAQRSESNRIESCFGIAIASKTEIVIEPVSENLDSTTYDVHAIPRGYISNPV 298
            +++ +  L ++ELG RS+MV DL++ L    C N+YVAYL LS+VS  +  I+ +L  I++   VAA +S   T  T NWNGS  RVINLA  S+   +           T++V+E   E        VH +     S  V
Sbjct:    3 LDEAFNALDVAELGQRSIMVSDLSEILRSPKCSNTYVAYLPLSKVSWVSIAILCSLGSISVFWCVAAIISFFVTKDTINWNGSCDRVINLAASSDPIGLCDHKDFTAVGSTDVVMEE-RETYGGPIQHVHIVSASVSSQTV 142          
The following BLAST results are available for this feature:
BLAST of Ggra1022.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IL847.130e-5038.18Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1R87.320e-3735.64Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IYY81.560e-1436.17Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 559..635
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 209..230
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 508..527
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 533..558
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 528..532
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..208
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 231..507
NoneNo IPR availableTMHMMTMhelixcoord: 535..557
NoneNo IPR availableTMHMMTMhelixcoord: 209..231

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000027_piloncontigtig00000027_pilon:613713..621373 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1022.t1Ggra1022.t1Gracilaria gracilis GNS1m malemRNAtig00000027_pilon 613713..621373 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1022.t1 ID=Ggra1022.t1|Name=Ggra1022.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=636bp
MRVGRTGSNADALLVEDDEFSLGPTLVVDEFTISVPMIISGSLGTFPRFE
FDESSSFFGRSNFSWNSSYSVDKRRIIGEKIVVEGPLRFVYIVGSNQLSP
YDMELYAFVTCDIPQLEFEKAQPEMFSSNCTVANLQRNSSRDGDWLTIDI
HVEALNEMEKTYPGLTISELGMRSLMVFDLADALSRDPCGNSYVAYLSLS
EVSRTTTTIILTLSGITLVSVVAAALSLLFTSGTYNWNGSYQRVINLAQR
SESNRIESCFGIAIASKTEIVIEPVSENLDSTTYDVHAIPRGYISNPVRK
SFSDTRLGEAAERVKKHFQSGGSILSIGRTGRNDDALLVEDEQFSLGPTQ
VVDEFKVSVPMNMSPGEGTVVVDWNLDVFLGPSGFDTAGRGVAIFDKWTY
VENKVIVEGPLYSIHLVDRLRSPPYDMGQYSFIRCDLAPQELVLVGAGGA
SKEVDVNCTVANLQRNVSLARTWETIPVHAEPPRQVDKTYPGLSLSEVGM
RSIMVSDLAFVLSLNSCGDSYVAYLPLSEVSRSSIIVILTLGGITFVSVI
AAGLSLLITRGTFNWNGSNQRVINLVASSESIEVKSCWHMGTASKADVVI
EPTTENLERPTYNVHALPRGAASNPVPKANVKMIR*
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