Ggra6249.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6249.t1
Unique Name	Ggra6249.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	509

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:240081..241607 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6249	Ggra6249	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 240081..241607 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6249.t1.stop1	Ggra6249.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 240081..240083 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6249.t1.CDS1	Ggra6249.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 240081..241607 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6249.t1.exon1	Ggra6249.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 240081..241607 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6249.t1.start1	Ggra6249.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 241605..241607 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6249.t1	Ggra6249.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 240081..241607 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:240081..241607-
coding sequence from alignment at tig00000879_pilon:240081..241607-

mRNA sequence

>Ggra6249.t1 ID=Ggra6249.t1|Name=Ggra6249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=509bp
MIEIPFGPGVAAAFLFLIFELVVFPVLIYTTSAVASILIYCHAKKGNEVR
IETLKFPYWNGDLLHRQWSHVLLLMLRAALIAIPVYLETGLEARRSLVSS
TIRHAFTVAPTENWVLYERNLNVSIGELIQQGRMVYDRCTRIDAEGWRIA
PHANVSFLENGRQRVECIPNTEKKVFRPVRNKDSMRNYSKHENDVSVKLS
WVEGPVEAFPNDSFSRDDRTKSQRYNNYTGMQYMVTNIELNDESDLECFP
SSSLQVPTIPTTFEFTSHLRDTPSFLCQKVTGTIIEYFFGVSEIRALNIT
SEERTDMLTNRTGSLTVTMRYIETLQFEKDMMIDAAQVANYSPGADDWRV
YGSGCDSCTNGSGAAEALHTRMNNLLYTRADNVTLEVSSSQFDVTVISNK
LLIIGVVEVGAVLLCGACMYVWLHCYDVQMPNTLNGLSELWAVSSDGAEY
MGTRKRRRVVLRRTKRVDSEPHKILEPSVIVPADEEEQDIQVQNCEQETR
DERLDTKA*

spliced messenger RNA

>Ggra6249.t1 ID=Ggra6249.t1|Name=Ggra6249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000879_pilon:240081..241607- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAGAAATACCGTTTGGACCCGGTGTTGCCGCTGCTTTTTTGTTCCT
CATCTTTGAGCTTGTTGTTTTTCCCGTACTAATATACACCACATCTGCCG
TTGCTTCCATCCTTATATATTGCCATGCGAAGAAGGGTAATGAAGTCCGC
ATCGAGACATTGAAGTTTCCCTATTGGAACGGAGATCTATTGCATCGTCA
ATGGTCACATGTGCTTCTTCTCATGTTGAGAGCGGCCCTCATCGCTATCC
CGGTTTACTTAGAGACAGGTCTTGAGGCTCGGCGAAGCCTTGTAAGCAGT
ACTATTCGACACGCATTTACTGTCGCTCCTACGGAGAATTGGGTGCTATA
TGAACGGAATCTCAACGTGAGCATTGGCGAATTGATCCAACAGGGTCGAA
TGGTGTACGATCGATGTACAAGAATAGATGCAGAAGGATGGCGTATAGCC
CCTCATGCTAACGTCTCATTTCTGGAAAATGGTCGCCAAAGAGTGGAATG
CATCCCCAACACAGAGAAAAAAGTGTTCAGACCGGTAAGAAACAAGGACT
CAATGCGTAATTATTCAAAGCACGAAAACGACGTTTCCGTGAAGCTTTCC
TGGGTTGAAGGTCCAGTTGAAGCATTTCCGAACGACTCTTTTTCTCGCGA
TGATCGCACCAAATCCCAACGCTACAACAATTACACAGGTATGCAGTACA
TGGTAACAAACATCGAACTGAATGATGAGAGTGATTTAGAATGCTTCCCC
TCAAGCTCTCTGCAAGTACCAACGATACCCACTACCTTCGAGTTTACGTC
TCACCTTAGAGACACCCCTTCATTTCTTTGCCAGAAGGTAACAGGAACCA
TTATAGAATACTTCTTTGGTGTTTCAGAAATTAGGGCACTAAACATAACG
AGCGAGGAGAGAACGGACATGCTGACGAACAGAACCGGATCATTAACAGT
TACCATGCGTTACATTGAAACTCTCCAGTTCGAGAAAGACATGATGATCG
ACGCGGCACAAGTAGCAAACTACTCACCGGGAGCAGATGACTGGCGTGTA
TATGGAAGTGGATGTGACTCATGCACTAATGGCAGTGGTGCTGCAGAGGC
GCTTCATACTAGGATGAACAATCTGCTATACACAAGAGCCGACAATGTAA
CTCTGGAAGTCAGTTCATCCCAGTTTGACGTAACCGTGATAAGCAACAAA
TTGCTGATTATTGGTGTAGTTGAAGTGGGTGCTGTTCTGTTGTGTGGTGC
GTGTATGTACGTTTGGCTGCACTGCTACGATGTTCAGATGCCCAACACTC
TCAATGGTCTTTCGGAGCTTTGGGCCGTTTCGAGTGACGGTGCGGAATAC
ATGGGAACACGCAAACGAAGAAGGGTTGTGCTGCGGAGGACAAAAAGAGT
TGATAGTGAACCACACAAAATATTAGAGCCGTCAGTGATTGTACCAGCTG
ACGAAGAGGAGCAAGACATTCAAGTCCAGAACTGTGAACAGGAGACGAGA
GACGAAAGGCTTGATACGAAAGCGTAA

protein sequence of Ggra6249.t1

>Ggra6249.t1 ID=Ggra6249.t1|Name=Ggra6249.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=509bp
MIEIPFGPGVAAAFLFLIFELVVFPVLIYTTSAVASILIYCHAKKGNEVR
IETLKFPYWNGDLLHRQWSHVLLLMLRAALIAIPVYLETGLEARRSLVSS
TIRHAFTVAPTENWVLYERNLNVSIGELIQQGRMVYDRCTRIDAEGWRIA
PHANVSFLENGRQRVECIPNTEKKVFRPVRNKDSMRNYSKHENDVSVKLS
WVEGPVEAFPNDSFSRDDRTKSQRYNNYTGMQYMVTNIELNDESDLECFP
SSSLQVPTIPTTFEFTSHLRDTPSFLCQKVTGTIIEYFFGVSEIRALNIT
SEERTDMLTNRTGSLTVTMRYIETLQFEKDMMIDAAQVANYSPGADDWRV
YGSGCDSCTNGSGAAEALHTRMNNLLYTRADNVTLEVSSSQFDVTVISNK
LLIIGVVEVGAVLLCGACMYVWLHCYDVQMPNTLNGLSELWAVSSDGAEY
MGTRKRRRVVLRRTKRVDSEPHKILEPSVIVPADEEEQDIQVQNCEQETR
DERLDTKA*

mRNA from alignment at tig00000879_pilon:240081..241607-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6249.t1 ID=Ggra6249.t1|Name=Ggra6249.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1527bp|location=Sequence derived from alignment at tig00000879_pilon:240081..241607- (Gracilaria gracilis GNS1m male)
ATGATAGAAATACCGTTTGGACCCGGTGTTGCCGCTGCTTTTTTGTTCCT
CATCTTTGAGCTTGTTGTTTTTCCCGTACTAATATACACCACATCTGCCG
TTGCTTCCATCCTTATATATTGCCATGCGAAGAAGGGTAATGAAGTCCGC
ATCGAGACATTGAAGTTTCCCTATTGGAACGGAGATCTATTGCATCGTCA
ATGGTCACATGTGCTTCTTCTCATGTTGAGAGCGGCCCTCATCGCTATCC
CGGTTTACTTAGAGACAGGTCTTGAGGCTCGGCGAAGCCTTGTAAGCAGT
ACTATTCGACACGCATTTACTGTCGCTCCTACGGAGAATTGGGTGCTATA
TGAACGGAATCTCAACGTGAGCATTGGCGAATTGATCCAACAGGGTCGAA
TGGTGTACGATCGATGTACAAGAATAGATGCAGAAGGATGGCGTATAGCC
CCTCATGCTAACGTCTCATTTCTGGAAAATGGTCGCCAAAGAGTGGAATG
CATCCCCAACACAGAGAAAAAAGTGTTCAGACCGGTAAGAAACAAGGACT
CAATGCGTAATTATTCAAAGCACGAAAACGACGTTTCCGTGAAGCTTTCC
TGGGTTGAAGGTCCAGTTGAAGCATTTCCGAACGACTCTTTTTCTCGCGA
TGATCGCACCAAATCCCAACGCTACAACAATTACACAGGTATGCAGTACA
TGGTAACAAACATCGAACTGAATGATGAGAGTGATTTAGAATGCTTCCCC
TCAAGCTCTCTGCAAGTACCAACGATACCCACTACCTTCGAGTTTACGTC
TCACCTTAGAGACACCCCTTCATTTCTTTGCCAGAAGGTAACAGGAACCA
TTATAGAATACTTCTTTGGTGTTTCAGAAATTAGGGCACTAAACATAACG
AGCGAGGAGAGAACGGACATGCTGACGAACAGAACCGGATCATTAACAGT
TACCATGCGTTACATTGAAACTCTCCAGTTCGAGAAAGACATGATGATCG
ACGCGGCACAAGTAGCAAACTACTCACCGGGAGCAGATGACTGGCGTGTA
TATGGAAGTGGATGTGACTCATGCACTAATGGCAGTGGTGCTGCAGAGGC
GCTTCATACTAGGATGAACAATCTGCTATACACAAGAGCCGACAATGTAA
CTCTGGAAGTCAGTTCATCCCAGTTTGACGTAACCGTGATAAGCAACAAA
TTGCTGATTATTGGTGTAGTTGAAGTGGGTGCTGTTCTGTTGTGTGGTGC
GTGTATGTACGTTTGGCTGCACTGCTACGATGTTCAGATGCCCAACACTC
TCAATGGTCTTTCGGAGCTTTGGGCCGTTTCGAGTGACGGTGCGGAATAC
ATGGGAACACGCAAACGAAGAAGGGTTGTGCTGCGGAGGACAAAAAGAGT
TGATAGTGAACCACACAAAATATTAGAGCCGTCAGTGATTGTACCAGCTG
ACGAAGAGGAGCAAGACATTCAAGTCCAGAACTGTGAACAGGAGACGAGA
GACGAAAGGCTTGATACGAAAGCGTAA

Coding sequence (CDS) from alignment at tig00000879_pilon:240081..241607-

>Ggra6249.t1 ID=Ggra6249.t1|Name=Ggra6249.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1527bp|location=Sequence derived from alignment at tig00000879_pilon:240081..241607- (Gracilaria gracilis GNS1m male)
ATGATAGAAATACCGTTTGGACCCGGTGTTGCCGCTGCTTTTTTGTTCCT
CATCTTTGAGCTTGTTGTTTTTCCCGTACTAATATACACCACATCTGCCG
TTGCTTCCATCCTTATATATTGCCATGCGAAGAAGGGTAATGAAGTCCGC
ATCGAGACATTGAAGTTTCCCTATTGGAACGGAGATCTATTGCATCGTCA
ATGGTCACATGTGCTTCTTCTCATGTTGAGAGCGGCCCTCATCGCTATCC
CGGTTTACTTAGAGACAGGTCTTGAGGCTCGGCGAAGCCTTGTAAGCAGT
ACTATTCGACACGCATTTACTGTCGCTCCTACGGAGAATTGGGTGCTATA
TGAACGGAATCTCAACGTGAGCATTGGCGAATTGATCCAACAGGGTCGAA
TGGTGTACGATCGATGTACAAGAATAGATGCAGAAGGATGGCGTATAGCC
CCTCATGCTAACGTCTCATTTCTGGAAAATGGTCGCCAAAGAGTGGAATG
CATCCCCAACACAGAGAAAAAAGTGTTCAGACCGGTAAGAAACAAGGACT
CAATGCGTAATTATTCAAAGCACGAAAACGACGTTTCCGTGAAGCTTTCC
TGGGTTGAAGGTCCAGTTGAAGCATTTCCGAACGACTCTTTTTCTCGCGA
TGATCGCACCAAATCCCAACGCTACAACAATTACACAGGTATGCAGTACA
TGGTAACAAACATCGAACTGAATGATGAGAGTGATTTAGAATGCTTCCCC
TCAAGCTCTCTGCAAGTACCAACGATACCCACTACCTTCGAGTTTACGTC
TCACCTTAGAGACACCCCTTCATTTCTTTGCCAGAAGGTAACAGGAACCA
TTATAGAATACTTCTTTGGTGTTTCAGAAATTAGGGCACTAAACATAACG
AGCGAGGAGAGAACGGACATGCTGACGAACAGAACCGGATCATTAACAGT
TACCATGCGTTACATTGAAACTCTCCAGTTCGAGAAAGACATGATGATCG
ACGCGGCACAAGTAGCAAACTACTCACCGGGAGCAGATGACTGGCGTGTA
TATGGAAGTGGATGTGACTCATGCACTAATGGCAGTGGTGCTGCAGAGGC
GCTTCATACTAGGATGAACAATCTGCTATACACAAGAGCCGACAATGTAA
CTCTGGAAGTCAGTTCATCCCAGTTTGACGTAACCGTGATAAGCAACAAA
TTGCTGATTATTGGTGTAGTTGAAGTGGGTGCTGTTCTGTTGTGTGGTGC
GTGTATGTACGTTTGGCTGCACTGCTACGATGTTCAGATGCCCAACACTC
TCAATGGTCTTTCGGAGCTTTGGGCCGTTTCGAGTGACGGTGCGGAATAC
ATGGGAACACGCAAACGAAGAAGGGTTGTGCTGCGGAGGACAAAAAGAGT
TGATAGTGAACCACACAAAATATTAGAGCCGTCAGTGATTGTACCAGCTG
ACGAAGAGGAGCAAGACATTCAAGTCCAGAACTGTGAACAGGAGACGAGA
GACGAAAGGCTTGATACGAAAGCGTAA