Ggra6279.t2 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6279.t2
Unique NameGgra6279.t2
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Homology
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A6C0K376 (DNA helicase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K376_9ZZZZ)

HSP 1 Score: 104 bits (260), Expect = 7.040e-21
Identity = 68/210 (32.38%), Postives = 113/210 (53.81%), Query Frame = 0
Query:   22 EQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWIN 231
            EQ+A++ A+ + G N +V+AVAGSGKT T L+ A++          PK  +L + YNK L  ++   R+ +V      ++ + T H    +Y+     T D  L    K+ + P +A+  F ++++DE QDMTPILF F+   ++ +    Q+++LGDP Q +Y F  AD  ++         L    P   F L I +RIT+++A ++N
Sbjct:    7 EQQAIIDAICS-GQNVLVSAVAGSGKTTTVLSLAKK--------VAPK-KILQITYNKLLKLEV---RERVVKEGI-DNVEIHTYHSLAVKYYDKKAYTDD-VLQVIIKANRSPRQAIAPFDILVLDEVQDMTPILFYFISQFLAQYKKPVQIILLGDPRQAIYEFKEADSRFLTLGG----KLWDSKPMLEFPLRISYRITNQIAAFVN 197          
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A6C0ICL7 (DNA helicase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0ICL7_9ZZZZ)

HSP 1 Score: 97.4 bits (241), Expect = 1.810e-18
Identity = 67/214 (31.31%), Postives = 114/214 (53.27%), Query Frame = 0
Query:   19 LTDEQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWINE 232
            +++EQ+ ++  V  KGH+  ++AVAGSGKT T+L     W++       P   +LLL YN RL  +   +  +         + V + H F  +++     T  G L ++  +   P ++L +  ++I+DEAQDMTP+ +  +R  +S  S  PQL+++GD  Q +Y FN AD  ++  A   F      + ++   LS  +RIT  MA+++NE
Sbjct:    6 VSEEQQHILDQV-EKGHHVQIDAVAGSGKTTTSL-----WIAHHH----PDKKILLLTYNARLKMETRQKASSFT------HLEVHSYHAFCVQHWDPKAFTDAGIL-RYLDNHTTPPQSLDY-SMLIIDEAQDMTPLYYRIVRRIVSACSSPPQLIIMGDRKQSIYGFNRADPRFLTLAPHLF---GGPSQWKRATLSTSYRITRPMASFLNE 198          
BLAST of Ggra6279.t2 vs. uniprot
Match: R4UHV4 (DNA helicase n=1 Tax=Spiroplasma syrphidicola EA-1 TaxID=1276229 RepID=R4UHV4_9MOLU)

HSP 1 Score: 96.7 bits (239), Expect = 3.850e-18
Identity = 69/211 (32.70%), Postives = 113/211 (53.55%), Query Frame = 0
Query:   21 DEQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWIN 231
            +EQ  V+ A+ N  +N  V AVAGSGKT TAL  A+++   +         +LLL YN++L  +   +++ L       ++ VRT H FG ++F       +G +    K+  QP   + F  L+++DE+QD+TP+L++F    +SL     +L +LGD  Q +Y +N AD  Y+ +A+  FK    D  ++   LS  +R+  E   +IN
Sbjct:   88 EEQTKVLEALEN--YNVKVQAVAGSGKTTTALHIAKKFKDKQ---------ILLLTYNRKLMDETKLKKEKLGID----NLEVRTFHSFGKKFFKENCYDDEG-IHNIIKNNLQPKININF-DLILIDESQDLTPLLYEFTCRIISLNKQDFKLCILGDKNQSIYEYNFADSRYLEKAELLFKFNKRD--WKECNLSESYRVNKETTDFIN 279          
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A3G5AFG0 (DNA helicase n=1 Tax=Hyperionvirus sp. TaxID=2487770 RepID=A0A3G5AFG0_9VIRU)

HSP 1 Score: 96.3 bits (238), Expect = 4.810e-18
Identity = 70/213 (32.86%), Postives = 113/213 (53.05%), Query Frame = 0
Query:   22 EQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGH---RYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWIN 231
            EQ  +V  +A   HN IV++ AG+GKT   L  A  +          K  +LLL YNK+L  +   +++ L        +H   +H +     RY+  +   TD E+    KS  +P + L +   +I+DE+QDMT + F  +   +   S + ++ +LGD FQ +Y FNGAD  +I+ A+  FK +  +  ++H KLSI +R+T+ MA +IN
Sbjct:    9 EQSQIVKYLAT--HNVIVDSCAGAGKTTCVLHVASHF----------KRPMLLLTYNKKLKFETRDKKNLL-------GLHHLDVHSYHSCVCRYYD-HKCYTDREIINVLKSDSEPKKPLSY-EYIIIDESQDMTSLYFQLVYKIIRDNSCKIKMCILGDHFQSIYDFNGADPRFIIHAEKLFKSVN-EFEWKHCKLSISYRLTNPMAKFIN 199          
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A6C0BB04 (DNA helicase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0BB04_9ZZZZ)

HSP 1 Score: 95.9 bits (237), Expect = 6.350e-18
Identity = 93/326 (28.53%), Postives = 154/326 (47.24%), Query Frame = 0
Query:   18 VLTDEQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRF--NGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLHRALAPFPTW--FEQHKENIERWWGEGIQANPRRPPSPGSVIYYRRPPHDDMSYADALGGVVEKVVTVFENYDTDSSALLSPFISSHPY---SPVRLITNEL 336
            + + EQ  V++AV   G+N  +++VAGSGKT T+L  A   +S R         V+L+ YN RL ++    R+ +     + ++ V + H FG  Y+      TD EL    K+   P R L    L+I+DEAQDMT + FDF++  +   +   QLLV+GD  Q +Y F   GAD  ++  A   +K  ++ AP+ + +L   +RIT +M  ++N+          +  +P     +  K+ I       IQ +P R                  S  + +   ++K++T    Y  D   +LSP + S      SP++++ N L
Sbjct:    6 IASKEQVDVISAVV-AGNNVQLDSVAGSGKTTTSLLLASALVSKR---------VILITYNARLKEET---RNRVKLNNIK-NLEVHSYHSFGLAYYHD-SCFTDSELLFILKNNIGPRRPL-VADLIIIDEAQDMTHLYFDFIQKFLRDINSPHQLLVMGDRLQCIYDFPQKGADSRFLTHAASVYK--SSTAPWINLELKTSYRITKQMEWFVND---------VMLGYPRMKSVKTSKQPIRY-----IQGDPFR------------------SVPEFICSEIQKILTA--GYKPDDIFILSPSVRSRSEEYSSPIKILENML 279          
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A437A859 (DNA helicase n=1 Tax=Arthrobotrys flagrans TaxID=97331 RepID=A0A437A859_9PEZI)

HSP 1 Score: 95.5 bits (236), Expect = 9.520e-18
Identity = 69/223 (30.94%), Postives = 109/223 (48.88%), Query Frame = 0
Query:   22 EQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDF----LRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKL------SICFRITHEMATWINENL 234
            +++A    VA K  N ++NA AGSGKT T L  A                +L L YN+RL  + +A+ ++L        + +   HG  +RY+     T  G L +  +   QPT  LP F ++++DE QDM PI+++F    LR C    +  PQL++LGDP Q +Y+FN AD+ ++      F     +    H +        + FR+T ++  +IN  L
Sbjct:  108 QEQARQILVAGK-QNVLINACAGSGKTTTLLQMAAHI----------GKKILALLYNRRLRAETIARSESLD----LKDLTIDNYHGLAYRYYTPEADTDQG-LKRIVEDDMQPTHPLPEFDVLVLDEQQDMNPIIYNFVLKLLRDCAKTGTNSPQLMLLGDPRQEIYQFNNADKRFLTHCRELFPGQYLENGRVHERTWVEINQMVSFRMTSKIIRFINHQL 314          
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A0C2X7L9 (DNA helicase n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C2X7L9_9AGAM)

HSP 1 Score: 94.7 bits (234), Expect = 1.550e-17
Identity = 73/225 (32.44%), Postives = 113/225 (50.22%), Query Frame = 0
Query:   21 DEQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPF-FGLVIVDEAQDMTPILFDFLRHCMSLFSYR----PQLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLH 240
            DEQ+AVV++V  KGHN +V+A  GSGKT TA   A+         T    ++L+L Y++ L      + +  +       + V T HGF  + +G   +  D  L Q   S KQPT  LP  + +V++DEAQD+TP L+ F    +S  ++     P LLV+GDP Q +Y +  AD  Y+  A   + +      +++  L+  FR+T      +N   N   +H
Sbjct:   40 DEQQAVVSSV-TKGHNVVVSARPGSGKTATAAYVAQ---------TNRDKSMLVLTYSRSLK----IKTEVDMRAAGLDHVDVHTFHGFAGKMYGTV-VENDDRLLQVCTSGKQPT--LPKNYEIVVLDEAQDLTPTLYRFTCTLLSALAHSLPKAPTLLVIGDPRQAIYGYQEADARYLQRAPELYSEYCP-GTWDNLPLTTSFRLTEPTGNLVNVCSNEKYIH 246          
BLAST of Ggra6279.t2 vs. uniprot
Match: A0A6C0EX18 (DNA helicase n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EX18_9ZZZZ)

HSP 1 Score: 93.6 bits (231), Expect = 3.820e-17
Identity = 70/237 (29.54%), Postives = 113/237 (47.68%), Query Frame = 0
Query:   21 DEQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFR---PSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDFLRHCMSLFSYRP-------QLLVLGDPFQLLYRFNGADEAYILEADCKFKDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLHRALAPFP 247
            DEQ  ++ A+  +G+N  V+AVAGSGKT T L+ A             + NVL + YN  L  + V Q+       +     ++ + T H  G +Y+     T  G L++  +    P + LP   ++++DE QDM  + F F+   +S             Q+L LGD +Q LY F GAD  Y+  +   +K   +  PF+  +LS  +RIT ++A ++N  +   N   A+   P
Sbjct:    6 DEQMNIINAI-KEGYNVQVDAVAGSGKTTTVLSLAHYIC---------EKNVLQVTYNSELKLE-VRQKQIKYAKEYDMQLDNLSIYTYHALGFKYYTELAKTDIG-LNKILEENMAPKKKLPHIDIIVIDEIQDMNELYFRFIIKFLSDVCSDTETGNGFVQILTLGDKYQGLYDFKGADTRYLTLSSEIWKLFLSPYPFKKLQLSTSYRITRQIAAFVNNVMLDENRLIAMKNGP 230          
BLAST of Ggra6279.t2 vs. uniprot
Match: S8AJB3 (DNA helicase n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8AJB3_DACHA)

HSP 1 Score: 92.8 bits (229), Expect = 7.490e-17
Identity = 69/235 (29.36%), Postives = 110/235 (46.81%), Query Frame = 0
Query:   36 NAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDF----LRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADCKF------KDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLHRALAPFPTWFEQHKENIERW 260
            N ++NA AGSGKT T L  A            PK   L L YN+RL  + + +  +L       ++++   HG  +RY+     T  G L +  +    P   LP F ++++DE QDM PI+++F    LR      +  PQL++LGDP Q +Y+FN AD+ ++      F           D  +      + FR+T ++A +IN  L    L  +  P  T  +  K+ + R+
Sbjct:  116 NIVINACAGSGKTTTLLQMAAN---------IPK-RFLALLYNRRLRVETIERAQSLG----LDNLYIDNYHGLAYRYYSREADTDQG-LKRIVEDDMPPLEPLPEFDVLVLDEQQDMNPIIYNFVLKLLRDSAKTGTNSPQLMLLGDPRQEIYQFNNADKRFLTHCRDLFPGQYIKNSKVQDRTWVEINQMVSFRMTSQIARFINHQL----LRGSKPPIGTIKDNPKDPLPRY 331          
BLAST of Ggra6279.t2 vs. uniprot
Match: G1XJC4 (DNA helicase n=8 Tax=Orbilia oligospora TaxID=2813651 RepID=G1XJC4_ARTOA)

HSP 1 Score: 92.0 bits (227), Expect = 1.370e-16
Identity = 70/228 (30.70%), Postives = 111/228 (48.68%), Query Frame = 0
Query:   22 EQRAVVTAVANKGHNAIVNAVAGSGKTRTALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPSIHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEAQDMTPILFDF----LRHCMSLFSYRPQLLVLGDPFQL-----LYRFNGADEAYILEADCKF------KDLAADAPFEHFKLSICFRITHEMATWINENL 234
            +++A    VA K  N ++NA AGSGKT T L  A                 L L YN+RL  + +A+ ++L     R ++ +   HG  +RY+     T  G L +  +   QPT  LP F ++++DE QDM PI+++F    LR C    +  PQL++LGDP Q+     +Y+FN AD+ ++      F         A +  +      + FR+T ++  +IN  L
Sbjct:  118 QEQARQILVAGK-QNILINACAGSGKTTTLLQMASHL----------GKKFLALLYNRRLRAETIARSESL---DLR-NLTIDNYHGLAYRYYTPEADTDQG-LKRIVEEDMQPTHPLPEFDVLVLDEQQDMNPIIYNFVLKLLRDCAKTGTNSPQLMLLGDPRQIRAIKEIYQFNNADKRFLTHCRDLFTGQYLENGKAHERTWVEINQMVSFRMTSQIIRFINRQL 329          
The following BLAST results are available for this feature:
BLAST of Ggra6279.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6C0K3767.040e-2132.38DNA helicase n=1 Tax=viral metagenome TaxID=107052... [more]
A0A6C0ICL71.810e-1831.31DNA helicase n=1 Tax=viral metagenome TaxID=107052... [more]
R4UHV43.850e-1832.70DNA helicase n=1 Tax=Spiroplasma syrphidicola EA-1... [more]
A0A3G5AFG04.810e-1832.86DNA helicase n=1 Tax=Hyperionvirus sp. TaxID=24877... [more]
A0A6C0BB046.350e-1828.53DNA helicase n=1 Tax=viral metagenome TaxID=107052... [more]
A0A437A8599.520e-1830.94DNA helicase n=1 Tax=Arthrobotrys flagrans TaxID=9... [more]
A0A0C2X7L91.550e-1732.44DNA helicase n=1 Tax=Serendipita vermifera MAFF 30... [more]
A0A6C0EX183.820e-1729.54DNA helicase n=1 Tax=viral metagenome TaxID=107052... [more]
S8AJB37.490e-1729.36DNA helicase n=1 Tax=Dactylellina haptotyla (strai... [more]
G1XJC41.370e-1630.70DNA helicase n=8 Tax=Orbilia oligospora TaxID=2813... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF13245AAA_19coord: 29..188
e-value: 4.5E-14
score: 52.9
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 12..207
e-value: 2.5E-25
score: 91.4
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 17..243
IPR000212DNA helicase, UvrD/REP typePANTHERPTHR11070UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBERcoord: 145..235
coord: 18..129

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:396809..397950 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6279.t2Ggra6279.t2Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 396809..397950 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6279.t2 ID=Ggra6279.t2|Name=Ggra6279.t2|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MTPSNPAPVIPKTSQTHVLTDEQRAVVTAVANKGHNAIVNAVAGSGKTRT
ALATARQWLSTRPVFTTPKPNVLLLAYNKRLSQDMVAQRDTLVPPPFRPS
IHVRTIHGFGHRYFGGYGLTTDGELSQWTKSRKQPTRALPFFGLVIVDEA
QDMTPILFDFLRHCMSLFSYRPQLLVLGDPFQLLYRFNGADEAYILEADC
KFKDLAADAPFEHFKLSICFRITHEMATWINENLNPNNLHRALAPFPTWF
EQHKENIERWWGEGIQANPRRPPSPGSVIYYRRPPHDDMSYADALGGVVE
KVVTVFENYDTDSSALLSPFISSHPYSPVRLITNELSLVYGVEQSWFIDD
SREANDPSSVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR000212DNA_helicase_UvrD/REP