Ggra6296.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6296.t1
Unique NameGgra6296.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length694
Homology
BLAST of Ggra6296.t1 vs. uniprot
Match: A0A2V3IJK0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJK0_9FLOR)

HSP 1 Score: 833 bits (2151), Expect = 2.660e-296
Identity = 439/672 (65.33%), Postives = 524/672 (77.98%), Query Frame = 0
Query:   37 SAPPRPRFTTPSIDALTLPDTFDDFIRLGDGAPPPVSRSPLEPPNTVREQTNVVHDSNTPSQFLTSLVRVASDTLETGLSHAARGGTGMLNAAGEVLPALSAVFAERTTR--------EATPRYATRPAQLRQLRAAPAPLLLVPSRATVVCDTVLARLAPARPGIVHITLENQQGREATAHVSSGTSPPSRA-------RSVPRVTAAAFVPRDARFVMGVSTNHVHSFSVELNDRRVSRMLRAAPTSIALSPDERFLYVGTSDGYLHVMDPDLSVRVTFLPPEIVSASLGSAFRHAPVSHVTSLADSVLICYEEGVVCHVNSNGDLLHPPFVAHARRTSGALGFFGVLALTIGDATDPSICLFELSTGRCLLRRMLSYAPTCLRRVSRSCNVIPRNGEVCPSEVTFLVGGDEAQVEVFRLVVLSPQKVELSMVYTISERMRRKDKNIVDLHYLPEEAMILALVSCGEVRRWHLTRSQASSLSLIEEDSSVQPTFTEQNVVEATEQDFSLPDYGRHTSRNVLKAQTVLATILDEDVVPEQVKDTLVTEFTKEQSAMVSKLVNSDTELRRARRRILARFTNGIRADNELGSLAERTLARASKRMAAMEMEHVTREHSETFRGIQSETVVKLKSMLKSVFSIPAVLRANSNALNQAKRDTEGIDPEDTQTGWT 693
            +A PRPR+TTPSIDALTLPDTFDDFIRLGD AP P                        P  F ++LVR A+DT+ETGL      GTG+LNAA EVLP+LSAVF++RT R        ++  R+A R  QLR LRAAPA +LLVPSRA V+ D V+A L   RP +  + +   +    T+  +S TSP S +       R   RVTAAA++PR ARF +GVSTNHV+S S ++ DRR SR+LR+ PTSIA+SPDER LYVGTSDGY+H+M+P L++RVTFLPPEIVSASLGSAFRHAPVSHV ++    L+CYEEG VC +N+NGDLL+ PF+AHARRTS AL FFGVL LTIGDA+DPS+ LFE+STGRCL RRML+Y PTCL+RVSRS NV    GEVCPSEVTF+VGGDEA VEV+++ VLSP KVE++ VYT++ER+R +D+++VD+HYLP++A++LAL++CGEVRRWH T+SQA++LSLIEE S  QPTFTEQNVVEATEQDF LPDYGRHTS NVLKAQTVLA ILDE+VVPEQ+KD LVTEFTKEQS+MV+KLV+SDTELRRARRRILARF+ GI ADNELGSL ERTLARASKRMAAMEME VTR+HS T R IQ ETV+KLK MLK+VFS PA+ R+ S  L QAKRD E I+P D Q GW+
Sbjct:   24 TAAPRPRYTTPSIDALTLPDTFDDFIRLGDAAPEP------------------------PPPFWSNLVRAATDTIETGLQR----GTGVLNAANEVLPSLSAVFSDRTARSVNDDSTSQSATRFAPRFVQLRLLRAAPAAMLLVPSRAAVISDVVIAHLNSTRPNLFPLDIAPDEP-PTTSSAASVTSPSSASPTLRSHGRPPTRVTAAAYMPRAARFFLGVSTNHVYSMSSDMGDRRQSRVLRSVPTSIAVSPDERLLYVGTSDGYMHIMEPGLNLRVTFLPPEIVSASLGSAFRHAPVSHVAAVQSGALVCYEEGAVCSINTNGDLLNSPFIAHARRTSSALSFFGVLVLTIGDASDPSMSLFEISTGRCLFRRMLAYTPTCLKRVSRSSNVTVIKGEVCPSEVTFIVGGDEAHVEVYKVAVLSPMKVEVNRVYTVNERIRGRDRHVVDMHYLPDDAVMLALLACGEVRRWHFTKSQANALSLIEEHSPTQPTFTEQNVVEATEQDFGLPDYGRHTSTNVLKAQTVLAAILDEEVVPEQIKDNLVTEFTKEQSSMVAKLVSSDTELRRARRRILARFSTGISADNELGSLTERTLARASKRMAAMEMEMVTRQHSATLRDIQRETVIKLKLMLKNVFSAPAIARSESQGLQQAKRDVEEINPNDGQIGWS 666          
The following BLAST results are available for this feature:
BLAST of Ggra6296.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IJK02.660e-29665.33Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 197..496
e-value: 1.4E-8
score: 35.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..82
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 226..496

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:478904..480985 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6296.t1Ggra6296.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 478904..480985 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6296.t1 ID=Ggra6296.t1|Name=Ggra6296.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=694bp
MQPVPPSPTSNSQHPHLPRASASTTATQSRARRRPTSAPPRPRFTTPSID
ALTLPDTFDDFIRLGDGAPPPVSRSPLEPPNTVREQTNVVHDSNTPSQFL
TSLVRVASDTLETGLSHAARGGTGMLNAAGEVLPALSAVFAERTTREATP
RYATRPAQLRQLRAAPAPLLLVPSRATVVCDTVLARLAPARPGIVHITLE
NQQGREATAHVSSGTSPPSRARSVPRVTAAAFVPRDARFVMGVSTNHVHS
FSVELNDRRVSRMLRAAPTSIALSPDERFLYVGTSDGYLHVMDPDLSVRV
TFLPPEIVSASLGSAFRHAPVSHVTSLADSVLICYEEGVVCHVNSNGDLL
HPPFVAHARRTSGALGFFGVLALTIGDATDPSICLFELSTGRCLLRRMLS
YAPTCLRRVSRSCNVIPRNGEVCPSEVTFLVGGDEAQVEVFRLVVLSPQK
VELSMVYTISERMRRKDKNIVDLHYLPEEAMILALVSCGEVRRWHLTRSQ
ASSLSLIEEDSSVQPTFTEQNVVEATEQDFSLPDYGRHTSRNVLKAQTVL
ATILDEDVVPEQVKDTLVTEFTKEQSAMVSKLVNSDTELRRARRRILARF
TNGIRADNELGSLAERTLARASKRMAAMEMEHVTREHSETFRGIQSETVV
KLKSMLKSVFSIPAVLRANSNALNQAKRDTEGIDPEDTQTGWT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf