Ggra6296.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6296.t1
Unique Name	Ggra6296.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	694

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000879_pilon	contig	tig00000879_pilon:478904..480985 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6296	Ggra6296	Gracilaria gracilis GNS1m male	gene	tig00000879_pilon 478904..480985 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6296.t1.start1	Ggra6296.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000879_pilon 478904..478906 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6296.t1.CDS1	Ggra6296.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000879_pilon 478904..480985 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6296.t1.exon1	Ggra6296.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000879_pilon 478904..480985 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6296.t1.stop1	Ggra6296.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000879_pilon 480983..480985 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6296.t1	Ggra6296.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000879_pilon 478904..480985 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000879_pilon:478904..480985+
coding sequence from alignment at tig00000879_pilon:478904..480985+

mRNA sequence

>Ggra6296.t1 ID=Ggra6296.t1|Name=Ggra6296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=694bp
MQPVPPSPTSNSQHPHLPRASASTTATQSRARRRPTSAPPRPRFTTPSID
ALTLPDTFDDFIRLGDGAPPPVSRSPLEPPNTVREQTNVVHDSNTPSQFL
TSLVRVASDTLETGLSHAARGGTGMLNAAGEVLPALSAVFAERTTREATP
RYATRPAQLRQLRAAPAPLLLVPSRATVVCDTVLARLAPARPGIVHITLE
NQQGREATAHVSSGTSPPSRARSVPRVTAAAFVPRDARFVMGVSTNHVHS
FSVELNDRRVSRMLRAAPTSIALSPDERFLYVGTSDGYLHVMDPDLSVRV
TFLPPEIVSASLGSAFRHAPVSHVTSLADSVLICYEEGVVCHVNSNGDLL
HPPFVAHARRTSGALGFFGVLALTIGDATDPSICLFELSTGRCLLRRMLS
YAPTCLRRVSRSCNVIPRNGEVCPSEVTFLVGGDEAQVEVFRLVVLSPQK
VELSMVYTISERMRRKDKNIVDLHYLPEEAMILALVSCGEVRRWHLTRSQ
ASSLSLIEEDSSVQPTFTEQNVVEATEQDFSLPDYGRHTSRNVLKAQTVL
ATILDEDVVPEQVKDTLVTEFTKEQSAMVSKLVNSDTELRRARRRILARF
TNGIRADNELGSLAERTLARASKRMAAMEMEHVTREHSETFRGIQSETVV
KLKSMLKSVFSIPAVLRANSNALNQAKRDTEGIDPEDTQTGWT*

spliced messenger RNA

>Ggra6296.t1 ID=Ggra6296.t1|Name=Ggra6296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00000879_pilon:478904..480985+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCAGTCCCCCCAAGTCCGACCTCCAACTCCCAACACCCGCACCT
GCCACGCGCCTCCGCCTCCACCACTGCCACTCAATCGCGCGCGCGCCGTC
GCCCGACATCTGCCCCGCCCCGACCCCGCTTCACCACCCCCTCTATCGAT
GCGCTTACGTTGCCGGACACCTTCGACGACTTCATCCGTCTGGGTGATGG
AGCTCCACCACCTGTCTCACGAAGTCCATTGGAGCCACCTAACACTGTTC
GCGAACAAACAAACGTTGTTCACGACTCAAATACACCCAGCCAATTTCTG
ACCTCACTAGTTCGCGTCGCCTCTGATACGCTGGAGACCGGACTCAGTCA
TGCCGCGCGTGGTGGTACAGGCATGTTGAACGCCGCCGGTGAAGTTCTCC
CAGCTTTGAGCGCGGTGTTTGCCGAGCGTACCACGCGTGAAGCCACTCCG
CGTTACGCCACACGCCCCGCGCAGTTGCGACAGCTGCGCGCCGCCCCCGC
ACCATTGCTCTTGGTTCCGTCGCGAGCAACGGTAGTGTGTGATACCGTGT
TGGCTAGACTTGCACCTGCTCGTCCAGGCATTGTGCACATAACGTTAGAG
AATCAGCAAGGAAGGGAAGCCACGGCTCATGTTTCATCGGGCACATCACC
TCCAAGTCGTGCGCGCAGTGTGCCGCGCGTCACTGCCGCTGCCTTTGTAC
CACGAGATGCGCGATTCGTGATGGGTGTTAGCACGAACCATGTGCATAGT
TTCTCAGTGGAACTAAATGACAGAAGGGTTTCACGAATGTTGAGGGCAGC
CCCCACTAGCATCGCGTTGTCGCCTGACGAGCGCTTTCTGTATGTAGGGA
CGTCTGATGGCTATCTTCATGTTATGGATCCGGATTTGTCTGTCCGTGTG
ACGTTTTTACCACCAGAGATTGTTAGCGCTTCGCTTGGGTCTGCGTTTCG
ACACGCACCTGTGTCTCATGTGACTTCCTTGGCAGACAGCGTGCTAATAT
GCTACGAGGAGGGAGTGGTGTGTCATGTTAATTCCAATGGGGACTTGCTG
CATCCTCCGTTTGTCGCCCATGCTCGTCGGACTTCAGGTGCCCTGGGATT
CTTCGGCGTTCTGGCTCTTACCATCGGCGATGCTACTGATCCATCCATCT
GCTTGTTTGAACTTTCCACTGGACGGTGCCTTCTTCGTAGAATGTTATCC
TATGCTCCTACATGCCTGAGGCGTGTAAGTAGGTCATGCAATGTCATTCC
CCGAAATGGGGAAGTGTGTCCATCAGAAGTTACCTTTTTAGTGGGCGGTG
ACGAAGCTCAGGTTGAGGTGTTCCGTCTTGTTGTGCTCTCACCACAAAAA
GTTGAATTGAGCATGGTGTACACCATCAGTGAACGCATGAGGAGGAAGGA
TAAGAACATAGTTGACTTGCACTATCTGCCGGAAGAAGCTATGATCCTTG
CCCTTGTGTCTTGTGGTGAAGTTAGAAGATGGCACTTAACCCGAAGCCAG
GCAAGCTCTTTGTCGTTGATAGAAGAAGATTCTTCTGTGCAACCTACATT
TACGGAGCAGAATGTCGTGGAGGCTACAGAACAGGATTTCAGTCTTCCTG
ATTATGGACGTCACACATCAAGAAATGTTCTCAAGGCACAAACGGTTCTT
GCCACAATTCTTGACGAAGACGTTGTACCCGAACAGGTTAAGGATACGCT
TGTTACAGAGTTCACTAAAGAGCAGTCTGCTATGGTGTCTAAGCTTGTCA
ACTCTGACACAGAGCTCCGCCGTGCTAGAAGAAGAATCCTCGCCCGATTT
ACGAATGGTATAAGGGCGGACAATGAACTCGGGTCCCTAGCCGAGCGTAC
TTTGGCTAGAGCTTCGAAGCGCATGGCCGCAATGGAGATGGAGCACGTTA
CAAGAGAGCATTCCGAAACATTTCGCGGAATCCAGAGCGAAACTGTGGTC
AAGTTGAAGTCTATGTTGAAAAGCGTTTTCTCAATACCGGCTGTATTGAG
AGCCAATTCCAATGCGTTGAACCAAGCAAAGCGGGACACAGAAGGCATAG
ATCCGGAAGACACACAAACTGGGTGGACCTGA

protein sequence of Ggra6296.t1

>Ggra6296.t1 ID=Ggra6296.t1|Name=Ggra6296.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=694bp
MQPVPPSPTSNSQHPHLPRASASTTATQSRARRRPTSAPPRPRFTTPSID
ALTLPDTFDDFIRLGDGAPPPVSRSPLEPPNTVREQTNVVHDSNTPSQFL
TSLVRVASDTLETGLSHAARGGTGMLNAAGEVLPALSAVFAERTTREATP
RYATRPAQLRQLRAAPAPLLLVPSRATVVCDTVLARLAPARPGIVHITLE
NQQGREATAHVSSGTSPPSRARSVPRVTAAAFVPRDARFVMGVSTNHVHS
FSVELNDRRVSRMLRAAPTSIALSPDERFLYVGTSDGYLHVMDPDLSVRV
TFLPPEIVSASLGSAFRHAPVSHVTSLADSVLICYEEGVVCHVNSNGDLL
HPPFVAHARRTSGALGFFGVLALTIGDATDPSICLFELSTGRCLLRRMLS
YAPTCLRRVSRSCNVIPRNGEVCPSEVTFLVGGDEAQVEVFRLVVLSPQK
VELSMVYTISERMRRKDKNIVDLHYLPEEAMILALVSCGEVRRWHLTRSQ
ASSLSLIEEDSSVQPTFTEQNVVEATEQDFSLPDYGRHTSRNVLKAQTVL
ATILDEDVVPEQVKDTLVTEFTKEQSAMVSKLVNSDTELRRARRRILARF
TNGIRADNELGSLAERTLARASKRMAAMEMEHVTREHSETFRGIQSETVV
KLKSMLKSVFSIPAVLRANSNALNQAKRDTEGIDPEDTQTGWT*

mRNA from alignment at tig00000879_pilon:478904..480985+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6296.t1 ID=Ggra6296.t1|Name=Ggra6296.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2082bp|location=Sequence derived from alignment at tig00000879_pilon:478904..480985+ (Gracilaria gracilis GNS1m male)
ATGCAACCAGTCCCCCCAAGTCCGACCTCCAACTCCCAACACCCGCACCT
GCCACGCGCCTCCGCCTCCACCACTGCCACTCAATCGCGCGCGCGCCGTC
GCCCGACATCTGCCCCGCCCCGACCCCGCTTCACCACCCCCTCTATCGAT
GCGCTTACGTTGCCGGACACCTTCGACGACTTCATCCGTCTGGGTGATGG
AGCTCCACCACCTGTCTCACGAAGTCCATTGGAGCCACCTAACACTGTTC
GCGAACAAACAAACGTTGTTCACGACTCAAATACACCCAGCCAATTTCTG
ACCTCACTAGTTCGCGTCGCCTCTGATACGCTGGAGACCGGACTCAGTCA
TGCCGCGCGTGGTGGTACAGGCATGTTGAACGCCGCCGGTGAAGTTCTCC
CAGCTTTGAGCGCGGTGTTTGCCGAGCGTACCACGCGTGAAGCCACTCCG
CGTTACGCCACACGCCCCGCGCAGTTGCGACAGCTGCGCGCCGCCCCCGC
ACCATTGCTCTTGGTTCCGTCGCGAGCAACGGTAGTGTGTGATACCGTGT
TGGCTAGACTTGCACCTGCTCGTCCAGGCATTGTGCACATAACGTTAGAG
AATCAGCAAGGAAGGGAAGCCACGGCTCATGTTTCATCGGGCACATCACC
TCCAAGTCGTGCGCGCAGTGTGCCGCGCGTCACTGCCGCTGCCTTTGTAC
CACGAGATGCGCGATTCGTGATGGGTGTTAGCACGAACCATGTGCATAGT
TTCTCAGTGGAACTAAATGACAGAAGGGTTTCACGAATGTTGAGGGCAGC
CCCCACTAGCATCGCGTTGTCGCCTGACGAGCGCTTTCTGTATGTAGGGA
CGTCTGATGGCTATCTTCATGTTATGGATCCGGATTTGTCTGTCCGTGTG
ACGTTTTTACCACCAGAGATTGTTAGCGCTTCGCTTGGGTCTGCGTTTCG
ACACGCACCTGTGTCTCATGTGACTTCCTTGGCAGACAGCGTGCTAATAT
GCTACGAGGAGGGAGTGGTGTGTCATGTTAATTCCAATGGGGACTTGCTG
CATCCTCCGTTTGTCGCCCATGCTCGTCGGACTTCAGGTGCCCTGGGATT
CTTCGGCGTTCTGGCTCTTACCATCGGCGATGCTACTGATCCATCCATCT
GCTTGTTTGAACTTTCCACTGGACGGTGCCTTCTTCGTAGAATGTTATCC
TATGCTCCTACATGCCTGAGGCGTGTAAGTAGGTCATGCAATGTCATTCC
CCGAAATGGGGAAGTGTGTCCATCAGAAGTTACCTTTTTAGTGGGCGGTG
ACGAAGCTCAGGTTGAGGTGTTCCGTCTTGTTGTGCTCTCACCACAAAAA
GTTGAATTGAGCATGGTGTACACCATCAGTGAACGCATGAGGAGGAAGGA
TAAGAACATAGTTGACTTGCACTATCTGCCGGAAGAAGCTATGATCCTTG
CCCTTGTGTCTTGTGGTGAAGTTAGAAGATGGCACTTAACCCGAAGCCAG
GCAAGCTCTTTGTCGTTGATAGAAGAAGATTCTTCTGTGCAACCTACATT
TACGGAGCAGAATGTCGTGGAGGCTACAGAACAGGATTTCAGTCTTCCTG
ATTATGGACGTCACACATCAAGAAATGTTCTCAAGGCACAAACGGTTCTT
GCCACAATTCTTGACGAAGACGTTGTACCCGAACAGGTTAAGGATACGCT
TGTTACAGAGTTCACTAAAGAGCAGTCTGCTATGGTGTCTAAGCTTGTCA
ACTCTGACACAGAGCTCCGCCGTGCTAGAAGAAGAATCCTCGCCCGATTT
ACGAATGGTATAAGGGCGGACAATGAACTCGGGTCCCTAGCCGAGCGTAC
TTTGGCTAGAGCTTCGAAGCGCATGGCCGCAATGGAGATGGAGCACGTTA
CAAGAGAGCATTCCGAAACATTTCGCGGAATCCAGAGCGAAACTGTGGTC
AAGTTGAAGTCTATGTTGAAAAGCGTTTTCTCAATACCGGCTGTATTGAG
AGCCAATTCCAATGCGTTGAACCAAGCAAAGCGGGACACAGAAGGCATAG
ATCCGGAAGACACACAAACTGGGTGGACCTGA

Coding sequence (CDS) from alignment at tig00000879_pilon:478904..480985+

>Ggra6296.t1 ID=Ggra6296.t1|Name=Ggra6296.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2082bp|location=Sequence derived from alignment at tig00000879_pilon:478904..480985+ (Gracilaria gracilis GNS1m male)
ATGCAACCAGTCCCCCCAAGTCCGACCTCCAACTCCCAACACCCGCACCT
GCCACGCGCCTCCGCCTCCACCACTGCCACTCAATCGCGCGCGCGCCGTC
GCCCGACATCTGCCCCGCCCCGACCCCGCTTCACCACCCCCTCTATCGAT
GCGCTTACGTTGCCGGACACCTTCGACGACTTCATCCGTCTGGGTGATGG
AGCTCCACCACCTGTCTCACGAAGTCCATTGGAGCCACCTAACACTGTTC
GCGAACAAACAAACGTTGTTCACGACTCAAATACACCCAGCCAATTTCTG
ACCTCACTAGTTCGCGTCGCCTCTGATACGCTGGAGACCGGACTCAGTCA
TGCCGCGCGTGGTGGTACAGGCATGTTGAACGCCGCCGGTGAAGTTCTCC
CAGCTTTGAGCGCGGTGTTTGCCGAGCGTACCACGCGTGAAGCCACTCCG
CGTTACGCCACACGCCCCGCGCAGTTGCGACAGCTGCGCGCCGCCCCCGC
ACCATTGCTCTTGGTTCCGTCGCGAGCAACGGTAGTGTGTGATACCGTGT
TGGCTAGACTTGCACCTGCTCGTCCAGGCATTGTGCACATAACGTTAGAG
AATCAGCAAGGAAGGGAAGCCACGGCTCATGTTTCATCGGGCACATCACC
TCCAAGTCGTGCGCGCAGTGTGCCGCGCGTCACTGCCGCTGCCTTTGTAC
CACGAGATGCGCGATTCGTGATGGGTGTTAGCACGAACCATGTGCATAGT
TTCTCAGTGGAACTAAATGACAGAAGGGTTTCACGAATGTTGAGGGCAGC
CCCCACTAGCATCGCGTTGTCGCCTGACGAGCGCTTTCTGTATGTAGGGA
CGTCTGATGGCTATCTTCATGTTATGGATCCGGATTTGTCTGTCCGTGTG
ACGTTTTTACCACCAGAGATTGTTAGCGCTTCGCTTGGGTCTGCGTTTCG
ACACGCACCTGTGTCTCATGTGACTTCCTTGGCAGACAGCGTGCTAATAT
GCTACGAGGAGGGAGTGGTGTGTCATGTTAATTCCAATGGGGACTTGCTG
CATCCTCCGTTTGTCGCCCATGCTCGTCGGACTTCAGGTGCCCTGGGATT
CTTCGGCGTTCTGGCTCTTACCATCGGCGATGCTACTGATCCATCCATCT
GCTTGTTTGAACTTTCCACTGGACGGTGCCTTCTTCGTAGAATGTTATCC
TATGCTCCTACATGCCTGAGGCGTGTAAGTAGGTCATGCAATGTCATTCC
CCGAAATGGGGAAGTGTGTCCATCAGAAGTTACCTTTTTAGTGGGCGGTG
ACGAAGCTCAGGTTGAGGTGTTCCGTCTTGTTGTGCTCTCACCACAAAAA
GTTGAATTGAGCATGGTGTACACCATCAGTGAACGCATGAGGAGGAAGGA
TAAGAACATAGTTGACTTGCACTATCTGCCGGAAGAAGCTATGATCCTTG
CCCTTGTGTCTTGTGGTGAAGTTAGAAGATGGCACTTAACCCGAAGCCAG
GCAAGCTCTTTGTCGTTGATAGAAGAAGATTCTTCTGTGCAACCTACATT
TACGGAGCAGAATGTCGTGGAGGCTACAGAACAGGATTTCAGTCTTCCTG
ATTATGGACGTCACACATCAAGAAATGTTCTCAAGGCACAAACGGTTCTT
GCCACAATTCTTGACGAAGACGTTGTACCCGAACAGGTTAAGGATACGCT
TGTTACAGAGTTCACTAAAGAGCAGTCTGCTATGGTGTCTAAGCTTGTCA
ACTCTGACACAGAGCTCCGCCGTGCTAGAAGAAGAATCCTCGCCCGATTT
ACGAATGGTATAAGGGCGGACAATGAACTCGGGTCCCTAGCCGAGCGTAC
TTTGGCTAGAGCTTCGAAGCGCATGGCCGCAATGGAGATGGAGCACGTTA
CAAGAGAGCATTCCGAAACATTTCGCGGAATCCAGAGCGAAACTGTGGTC
AAGTTGAAGTCTATGTTGAAAAGCGTTTTCTCAATACCGGCTGTATTGAG
AGCCAATTCCAATGCGTTGAACCAAGCAAAGCGGGACACAGAAGGCATAG
ATCCGGAAGACACACAAACTGGGTGGACCTGA