Ggra6236.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6236.t1
Unique NameGgra6236.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:111038..111628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1206101.AZXC01000006_gene4047
Preferred namemscL
PFAMsMscL
Max annot lvl201174|Actinobacteria
KEGG koko:K03282
KEGG TC1.A.22.1
Evalue1.03e-23
EggNOG OGsCOG1970@1|root,COG1970@2|Bacteria,2IQDN@201174|Actinobacteria
DescriptionChannel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell
COG categoryM
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6236Ggra6236Gracilaria gracilis GNS1m malegenetig00000879_pilon 111038..111628 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6236.t1.stop1Ggra6236.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 111038..111040 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6236.t1.CDS1Ggra6236.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 111038..111628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6236.t1.exon1Ggra6236.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 111038..111628 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6236.t1.start1Ggra6236.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 111626..111628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6236.t1Ggra6236.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 111038..111628 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6236.t1 ID=Ggra6236.t1|Name=Ggra6236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=197bp
MATTAPPPPPAQVDVENPPSAADEDSQLYVKQEAHKRHLFSSCFRGERKV
YGTGKSIVEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIG
IIGADSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYG
GRFAPTWIVRKCPFCFSEMAAIATKCPSCGSDVEPIELERVVSKNK*
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spliced messenger RNA

>Ggra6236.t1 ID=Ggra6236.t1|Name=Ggra6236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000879_pilon:111038..111628- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGACAACCGCACCACCACCACCACCCGCACAGGTTGATGTAGAGAA
CCCACCGTCAGCTGCTGACGAAGATTCGCAGCTGTACGTCAAGCAAGAAG
CGCACAAGCGCCATTTGTTCTCATCTTGTTTCAGGGGGGAGAGAAAGGTA
TACGGCACGGGAAAGTCCATAGTGGAAGAGTTTCGAGACTTCATTTTCGG
CGGTAATCTCATTCGTATTGCAGTGGCTTTCATTCTCGCCATTTCGCTTG
AACGGCTTGTTGAACAGTTTGTGGAATCGTTTATCACGCCCATCATTGGT
ATTATAGGCGCCGACTCTTTCGAGGATCTGATTTTCACGGTTCGCTCCTC
CAAGTTCAAGTACGGTTTGTTCATTAATGCGTTTATCTCGTTCTTGGTGA
TCTGTGTGACGTTGTTCAGTTGCTTGATTTTACCGCTGCAGAAGTACGGC
GGACGGTTTGCGCCCACTTGGATTGTGCGAAAGTGCCCGTTCTGCTTCTC
TGAGATGGCGGCAATAGCGACCAAGTGCCCGTCATGTGGCTCGGACGTCG
AGCCTATAGAGCTTGAACGCGTGGTGTCGAAGAACAAGTAA
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protein sequence of Ggra6236.t1

>Ggra6236.t1 ID=Ggra6236.t1|Name=Ggra6236.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MATTAPPPPPAQVDVENPPSAADEDSQLYVKQEAHKRHLFSSCFRGERKV
YGTGKSIVEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIG
IIGADSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYG
GRFAPTWIVRKCPFCFSEMAAIATKCPSCGSDVEPIELERVVSKNK*
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mRNA from alignment at tig00000879_pilon:111038..111628-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6236.t1 ID=Ggra6236.t1|Name=Ggra6236.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=591bp|location=Sequence derived from alignment at tig00000879_pilon:111038..111628- (Gracilaria gracilis GNS1m male)
ATGGCGACAACCGCACCACCACCACCACCCGCACAGGTTGATGTAGAGAA
CCCACCGTCAGCTGCTGACGAAGATTCGCAGCTGTACGTCAAGCAAGAAG
CGCACAAGCGCCATTTGTTCTCATCTTGTTTCAGGGGGGAGAGAAAGGTA
TACGGCACGGGAAAGTCCATAGTGGAAGAGTTTCGAGACTTCATTTTCGG
CGGTAATCTCATTCGTATTGCAGTGGCTTTCATTCTCGCCATTTCGCTTG
AACGGCTTGTTGAACAGTTTGTGGAATCGTTTATCACGCCCATCATTGGT
ATTATAGGCGCCGACTCTTTCGAGGATCTGATTTTCACGGTTCGCTCCTC
CAAGTTCAAGTACGGTTTGTTCATTAATGCGTTTATCTCGTTCTTGGTGA
TCTGTGTGACGTTGTTCAGTTGCTTGATTTTACCGCTGCAGAAGTACGGC
GGACGGTTTGCGCCCACTTGGATTGTGCGAAAGTGCCCGTTCTGCTTCTC
TGAGATGGCGGCAATAGCGACCAAGTGCCCGTCATGTGGCTCGGACGTCG
AGCCTATAGAGCTTGAACGCGTGGTGTCGAAGAACAAGTAA
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Coding sequence (CDS) from alignment at tig00000879_pilon:111038..111628-

>Ggra6236.t1 ID=Ggra6236.t1|Name=Ggra6236.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=591bp|location=Sequence derived from alignment at tig00000879_pilon:111038..111628- (Gracilaria gracilis GNS1m male)
ATGGCGACAACCGCACCACCACCACCACCCGCACAGGTTGATGTAGAGAA
CCCACCGTCAGCTGCTGACGAAGATTCGCAGCTGTACGTCAAGCAAGAAG
CGCACAAGCGCCATTTGTTCTCATCTTGTTTCAGGGGGGAGAGAAAGGTA
TACGGCACGGGAAAGTCCATAGTGGAAGAGTTTCGAGACTTCATTTTCGG
CGGTAATCTCATTCGTATTGCAGTGGCTTTCATTCTCGCCATTTCGCTTG
AACGGCTTGTTGAACAGTTTGTGGAATCGTTTATCACGCCCATCATTGGT
ATTATAGGCGCCGACTCTTTCGAGGATCTGATTTTCACGGTTCGCTCCTC
CAAGTTCAAGTACGGTTTGTTCATTAATGCGTTTATCTCGTTCTTGGTGA
TCTGTGTGACGTTGTTCAGTTGCTTGATTTTACCGCTGCAGAAGTACGGC
GGACGGTTTGCGCCCACTTGGATTGTGCGAAAGTGCCCGTTCTGCTTCTC
TGAGATGGCGGCAATAGCGACCAAGTGCCCGTCATGTGGCTCGGACGTCG
AGCCTATAGAGCTTGAACGCGTGGTGTCGAAGAACAAGTAA
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