Ggra6236.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6236.t1
Unique NameGgra6236.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length197
Homology
BLAST of Ggra6236.t1 vs. uniprot
Match: A0A2V3IMB9 (Large-conductance mechanosensitive channel n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMB9_9FLOR)

HSP 1 Score: 229 bits (584), Expect = 1.140e-73
Identity = 110/186 (59.14%), Postives = 150/186 (80.65%), Query Frame = 0
Query:   12 QVDVENPPSA--ADEDSQLYVKQEAHKRHLFSSCFRGERKVYGTGKSIVEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGADSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRFAPTWIVRKCPFCFSEMAAIATKXXXCGSDVEPIELERVVSKN 195
            +VDVE+PP+A     D++      +H + +   C+ GE+  YGTGK ++ EFRDF+FGGNLIRIAVA +LA++LE+LV QFV SF+TPIIGIIGADSFE+L FT+RSS+FKYGLF++A  SF+VIC+TLF CLILP+Q+YGGR  P+WI+RKCP+C+++MAAIAT+   CGSDVEP+ + + ++K+
Sbjct:   10 EVDVESPPTAIAVARDTETV---SSHSQEVVVGCW-GEKAQYGTGKPMLAEFRDFMFGGNLIRIAVALVLALALEKLVNQFVASFVTPIIGIIGADSFEELTFTIRSSEFKYGLFLDALFSFIVICITLFFCLILPVQRYGGRCVPSWIIRKCPYCYTDMAAIATRCPSCGSDVEPLPIGKTMAKS 191          
BLAST of Ggra6236.t1 vs. uniprot
Match: R7QNM6 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNM6_CHOCR)

HSP 1 Score: 194 bits (493), Expect = 3.700e-60
Identity = 93/150 (62.00%), Postives = 117/150 (78.00%), Query Frame = 0
Query:   41 SSCF--RGERKVYGTGKSIVEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGADSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRFAPTWIVRKCPFCFSEMAAIATKXXXCGSDVEPIEL 188
            +SCF  + ++  YGTGKSI+ EFRDFIFGGNLIRIAVAF+LA+S+ERLV  FV SF+TPI+G+IG  +FEDL FT+R S F YGLF++A ISF++I + LF CLILP Q+YGGR  P WI+RKCP+CF +M AI TK   C S VE + +
Sbjct:   16 TSCFGSKKDKVQYGTGKSIIVEFRDFIFGGNLIRIAVAFVLALSIERLVTSFVSSFVTPILGVIGDTNFEDLKFTIRQSNFVYGLFLDALISFIIIALVLFFCLILPTQRYGGRCVPAWIMRKCPYCFQDMPAIGTKCPSCCSSVEAVPI 165          
BLAST of Ggra6236.t1 vs. uniprot
Match: MscL family protein n=1 Tax=Nocardiopsis sp. MG754419 TaxID=2259865 RepID=UPI001BA5A8E0 (MscL family protein n=1 Tax=Nocardiopsis sp. MG754419 TaxID=2259865 RepID=UPI001BA5A8E0)

HSP 1 Score: 99.8 bits (247), Expect = 1.890e-23
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRF--APTWIVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            +E F+ F+  GNL+++AVA ++      L+  F E FITP++GI G   +F DL F +  S+F YG F++A ISFL+    L+ C++LPL K   +F  A     R+CP CFS++   A+K   C S+V P
Sbjct:    1 MEGFKKFLLQGNLVQLAVAVVIGSVFAGLITAFTEGFITPLLGIFGGVPTFGDLYFEINGSRFLYGSFVDALISFLMTAAILYFCVVLPLSKLMEKFIKAEEATTRECPHCFSDINKKASKCPNCTSEVTP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: MscL family protein n=1 Tax=Nocardiopsis alkaliphila TaxID=225762 RepID=UPI0003490935 (MscL family protein n=1 Tax=Nocardiopsis alkaliphila TaxID=225762 RepID=UPI0003490935)

HSP 1 Score: 99.0 bits (245), Expect = 3.860e-23
Identity = 53/131 (40.46%), Postives = 80/131 (61.07%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRF--APTWIVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            +E F+ F+F GNL+++AVA ++      L+  F E FITP++G+ G   +F +L F V  S+F YG FI+A ISFL+    L+  ++LPL K   RF  A     R+CP+CF+E+   A++   C S+V P
Sbjct:    1 MEGFKKFLFQGNLVQLAVAVVIGSVFAGLITAFTEGFITPLLGVFGGVPTFGELYFEVNGSRFLYGAFIDALISFLLTAAILYFLVVLPLSKMMERFIKAEEATTRECPYCFTEINKKASRCAHCTSEVTP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: large conductance mechanosensitive channel protein MscL n=1 Tax=Nocardiopsis ganjiahuensis TaxID=239984 RepID=UPI00034BD474 (large conductance mechanosensitive channel protein MscL n=1 Tax=Nocardiopsis ganjiahuensis TaxID=239984 RepID=UPI00034BD474)

HSP 1 Score: 98.6 bits (244), Expect = 5.310e-23
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRF--APTWIVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            +E F+ F+  GNL+++AVA ++      L+  F E FITP++GI G   SF DL F +  S+F YG F++A ISFL+    L+  +++PL K   RF  A   I R+CP C++E+   A+K   C S+V P
Sbjct:    1 MEGFKKFLLQGNLVQLAVAVVIGSVFAGLISAFTEGFITPLLGIFGGVPSFGDLYFEINGSRFLYGAFVDALISFLITAAILYFFVVMPLGKLMERFVKAEEAITRECPHCYTEINKKASKCAHCTSEVTP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: A0A1Q4XIB4 (Mechanosensitive ion channel protein MscL n=1 Tax=Nocardiopsis sp. TSRI0078 TaxID=1718951 RepID=A0A1Q4XIB4_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 2.890e-22
Identity = 51/131 (38.93%), Postives = 81/131 (61.83%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRFAPTWIV--RKCPFCFSEMAAIATKXXXCGSDVEP 185
            ++ F+DF+  GNL+++AVA ++      LV  F E+FITP++GI G   +F DL F +  S+F YG FI+A I+FL     L+  +++P+ +   RFA    V  R+CP CFS+++  AT+   C S++ P
Sbjct:    1 MQGFKDFLLRGNLVQLAVAVVIGAVFADLVTAFTEAFITPLLGIFGGVPTFGDLYFEINGSRFLYGAFIDALITFLTTAAVLYFFVVMPVARALERFAKAEDVATRECPHCFSQVSKKATRCAGCTSEIVP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: A0A841IHD2 (Large conductance mechanosensitive channel n=1 Tax=Nocardiopsis algeriensis TaxID=1478215 RepID=A0A841IHD2_9ACTN)

HSP 1 Score: 96.3 bits (238), Expect = 4.670e-22
Identity = 50/131 (38.17%), Postives = 76/131 (58.02%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRFAPTW--IVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            +E F+ F+  GNL+++AVA ++      LV  F E FITP+IGI G   +F +L F +  S+F YG+FI+A +SFL+    L+  +++P+ K   RF        R+CP CFSE+   A +   C  +V P
Sbjct:    1 MEGFKKFLLQGNLVQLAVAVVIGTVFANLVTSFTEGFITPLIGIFGGIPTFGELYFEINGSRFMYGMFIDALVSFLITATVLYFVVVMPMSKLMERFVKVEEATTRECPHCFSEINKKAVRCPCCTGEVVP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: large conductance mechanosensitive channel protein MscL n=1 Tax=Nocardiopsis quinghaiensis TaxID=464995 RepID=UPI001239F55E (large conductance mechanosensitive channel protein MscL n=1 Tax=Nocardiopsis quinghaiensis TaxID=464995 RepID=UPI001239F55E)

HSP 1 Score: 95.1 bits (235), Expect = 1.140e-21
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRFAPTW--IVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            ++ F+ F+  GNL+++AVA ++      LV  F E FITP++GI G   SF +L F +  S+F YG F++A ISFL+    L+  ++LP      RFA     + R+CP CFS+++  AT+   C S+V P
Sbjct:    1 MQGFKTFLLQGNLVQLAVAVVIGAVFADLVTAFTEGFITPLLGIFGGVPSFGELYFEINGSRFPYGAFVDALISFLITAAILYFFVVLPAANALERFARAEESLTRECPHCFSQISRKATRCADCTSEVAP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: MscL family protein n=2 Tax=Nocardiopsis TaxID=2013 RepID=UPI0013571C65 (MscL family protein n=2 Tax=Nocardiopsis TaxID=2013 RepID=UPI0013571C65)

HSP 1 Score: 94.7 bits (234), Expect = 1.610e-21
Identity = 50/131 (38.17%), Postives = 77/131 (58.78%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRF--APTWIVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            ++ F+ F+  GNL+++AVA ++      L+  F E FITP++GI G   +F +L F +  S+F YG F++A ISFL+    L+  ++LP+ K   RF  A     R CP CFS++   AT+   C S+V P
Sbjct:    1 MQGFKKFLLQGNLVQLAVAVVIGSVFANLITAFTEGFITPLLGIFGGVPTFGELYFEINGSRFMYGAFVDALISFLITAAVLYFLVVLPVAKVVERFVEAEEATTRACPHCFSDIDKKATRCPNCTSEVVP 131          
BLAST of Ggra6236.t1 vs. uniprot
Match: A0A1V3C4J6 (Mechanosensitive ion channel protein MscL n=2 Tax=Nocardiopsis sinuspersici TaxID=501010 RepID=A0A1V3C4J6_9ACTN)

HSP 1 Score: 94.4 bits (233), Expect = 2.280e-21
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = 0
Query:   58 VEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIGIIGA-DSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYGGRFAPTW--IVRKCPFCFSEMAAIATKXXXCGSDVEP 185
            ++ F++F+  GNL+++AVA ++      L+  F E FITP++GI G    F DL F +  S+F YG FI+A ISFL+    L+  ++LP  K   RFA       R CP CFS++   A +   C S+V P
Sbjct:    1 MQGFKNFLLRGNLVQLAVAVVIGAVFAELITAFTEGFITPLLGIFGGVPDFSDLYFEINGSRFPYGAFIDALISFLITAAILYFLVVLPTAKALERFARAEESTTRDCPHCFSQIDKRAARCASCTSEVVP 131          
The following BLAST results are available for this feature:
BLAST of Ggra6236.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IMB91.140e-7359.14Large-conductance mechanosensitive channel n=1 Tax... [more]
R7QNM63.700e-6062.00Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
MscL family protein n=1 Tax=Nocardiopsis sp. MG754419 TaxID=2259865 RepID=UPI001BA5A8E01.890e-2340.46MscL family protein n=1 Tax=Nocardiopsis sp. MG754... [more]
MscL family protein n=1 Tax=Nocardiopsis alkaliphila TaxID=225762 RepID=UPI00034909353.860e-2340.46MscL family protein n=1 Tax=Nocardiopsis alkaliphi... [more]
large conductance mechanosensitive channel protein MscL n=1 Tax=Nocardiopsis ganjiahuensis TaxID=239984 RepID=UPI00034BD4745.310e-2340.46large conductance mechanosensitive channel protein... [more]
A0A1Q4XIB42.890e-2238.93Mechanosensitive ion channel protein MscL n=1 Tax=... [more]
A0A841IHD24.670e-2238.17Large conductance mechanosensitive channel n=1 Tax... [more]
large conductance mechanosensitive channel protein MscL n=1 Tax=Nocardiopsis quinghaiensis TaxID=464995 RepID=UPI001239F55E1.140e-2138.93large conductance mechanosensitive channel protein... [more]
MscL family protein n=2 Tax=Nocardiopsis TaxID=2013 RepID=UPI0013571C651.610e-2138.17MscL family protein n=2 Tax=Nocardiopsis TaxID=201... [more]
A0A1V3C4J62.280e-2138.93Mechanosensitive ion channel protein MscL n=2 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036019Large-conductance mechanosensitive channel MscLGENE3D1.10.1200.120coord: 57..160
e-value: 3.8E-18
score: 67.8
IPR036019Large-conductance mechanosensitive channel MscLSUPERFAMILY81330Gated mechanosensitive channelcoord: 68..168
IPR037673Large-conductance mechanosensitive channel/anditomin synthesis protein LPFAMPF01741MscLcoord: 58..147
e-value: 1.3E-18
score: 67.4
IPR037673Large-conductance mechanosensitive channel/anditomin synthesis protein LPANTHERPTHR30266MECHANOSENSITIVE CHANNEL MSCLcoord: 42..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..83
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 84..122
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 123..144
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 145..196
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..63
NoneNo IPR availableTMHMMTMhelixcoord: 90..107
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 64..83

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:111038..111628 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6236.t1Ggra6236.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 111038..111628 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6236.t1 ID=Ggra6236.t1|Name=Ggra6236.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=197bp
MATTAPPPPPAQVDVENPPSAADEDSQLYVKQEAHKRHLFSSCFRGERKV
YGTGKSIVEEFRDFIFGGNLIRIAVAFILAISLERLVEQFVESFITPIIG
IIGADSFEDLIFTVRSSKFKYGLFINAFISFLVICVTLFSCLILPLQKYG
GRFAPTWIVRKCPFCFSEMAAIATKCPSCGSDVEPIELERVVSKNK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036019MscL_channel
IPR037673MSC/AndL