Ggra6290.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6290.t1
Unique NameGgra6290.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length274
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:430985..431806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6290Ggra6290Gracilaria gracilis GNS1m malegenetig00000879_pilon 430985..431806 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6290.t1.stop1Ggra6290.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000879_pilon 430985..430987 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6290.t1.CDS1Ggra6290.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000879_pilon 430985..431806 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6290.t1.exon1Ggra6290.t1.exon1Gracilaria gracilis GNS1m maleexontig00000879_pilon 430985..431806 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6290.t1.start1Ggra6290.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000879_pilon 431804..431806 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6290.t1Ggra6290.t1Gracilaria gracilis GNS1m malepolypeptidetig00000879_pilon 430985..431806 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6290.t1 ID=Ggra6290.t1|Name=Ggra6290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=274bp
MSKLSSVPSFGKMAEPLSGSSVRLHDDHAAAAADAAAAAAGVNAHTAVPQ
RAPQHAAAAARVTPAEYEEFGSEALITNVYDDVEEDFDDEATPSTLFRQI
GPSISMAHHIDAYRPAQQHPHPHFEHVEHEQHEQQLEHEHLDQRPPLSPS
QQIGNMRGETGKIATPPPPPPPPPPPPPPPPPLTAVRSYGEEHSIPPPPN
VPFASRQPPANNNNNKSLHSYDYASTPATKGAQYEKELNGVIVHDQHRYT
AHVGEAIVAHERYSSATSLTDLA*
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spliced messenger RNA

>Ggra6290.t1 ID=Ggra6290.t1|Name=Ggra6290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000879_pilon:430985..431806- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAAGCTGTCGTCCGTGCCGTCGTTCGGCAAGATGGCCGAACCGCT
GTCGGGCAGCTCGGTGCGTCTGCACGACGACCACGCTGCAGCTGCTGCTG
ATGCCGCTGCTGCTGCGGCCGGCGTGAATGCGCACACCGCTGTGCCGCAG
CGCGCGCCGCAGCACGCCGCCGCCGCCGCTCGAGTCACGCCGGCAGAGTA
CGAGGAGTTTGGATCCGAGGCGCTTATCACCAACGTGTACGACGACGTGG
AGGAGGACTTTGACGATGAAGCTACGCCTAGCACCCTCTTCCGCCAAATC
GGTCCTAGCATCAGCATGGCGCACCATATTGACGCGTACCGCCCCGCGCA
ACAACACCCCCACCCCCACTTTGAGCACGTTGAGCACGAGCAGCACGAGC
AGCAGCTTGAGCACGAGCACCTTGATCAACGCCCTCCGCTCTCTCCTTCT
CAACAAATCGGCAACATGCGTGGCGAGACCGGTAAGATTGCCACCCCACC
GCCGCCGCCACCACCACCGCCTCCGCCCCCGCCTCCGCCCCCGCCGCTTA
CTGCGGTGCGCTCGTACGGCGAGGAGCACAGTATCCCCCCTCCGCCCAAC
GTTCCTTTTGCAAGTCGTCAACCGCCTGCCAACAACAACAACAACAAGTC
ATTACACTCGTATGATTATGCGAGCACGCCCGCCACAAAAGGCGCACAGT
ATGAAAAAGAGCTCAACGGCGTCATCGTGCACGACCAGCATCGTTACACC
GCGCACGTTGGCGAGGCCATCGTCGCCCACGAGCGCTATTCGTCCGCCAC
TTCGCTCACGGACTTGGCGTGA
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protein sequence of Ggra6290.t1

>Ggra6290.t1 ID=Ggra6290.t1|Name=Ggra6290.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=274bp
MSKLSSVPSFGKMAEPLSGSSVRLHDDHAAAAADAAAAAAGVNAHTAVPQ
RAPQHAAAAARVTPAEYEEFGSEALITNVYDDVEEDFDDEATPSTLFRQI
GPSISMAHHIDAYRPAQQHPHPHFEHVEHEQHEQQLEHEHLDQRPPLSPS
QQIGNMRGETGKIATPPPPPPPPPPPPPPPPPLTAVRSYGEEHSIPPPPN
VPFASRQPPANNNNNKSLHSYDYASTPATKGAQYEKELNGVIVHDQHRYT
AHVGEAIVAHERYSSATSLTDLA*
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mRNA from alignment at tig00000879_pilon:430985..431806-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6290.t1 ID=Ggra6290.t1|Name=Ggra6290.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=822bp|location=Sequence derived from alignment at tig00000879_pilon:430985..431806- (Gracilaria gracilis GNS1m male)
ATGTCCAAGCTGTCGTCCGTGCCGTCGTTCGGCAAGATGGCCGAACCGCT
GTCGGGCAGCTCGGTGCGTCTGCACGACGACCACGCTGCAGCTGCTGCTG
ATGCCGCTGCTGCTGCGGCCGGCGTGAATGCGCACACCGCTGTGCCGCAG
CGCGCGCCGCAGCACGCCGCCGCCGCCGCTCGAGTCACGCCGGCAGAGTA
CGAGGAGTTTGGATCCGAGGCGCTTATCACCAACGTGTACGACGACGTGG
AGGAGGACTTTGACGATGAAGCTACGCCTAGCACCCTCTTCCGCCAAATC
GGTCCTAGCATCAGCATGGCGCACCATATTGACGCGTACCGCCCCGCGCA
ACAACACCCCCACCCCCACTTTGAGCACGTTGAGCACGAGCAGCACGAGC
AGCAGCTTGAGCACGAGCACCTTGATCAACGCCCTCCGCTCTCTCCTTCT
CAACAAATCGGCAACATGCGTGGCGAGACCGGTAAGATTGCCACCCCACC
GCCGCCGCCACCACCACCGCCTCCGCCCCCGCCTCCGCCCCCGCCGCTTA
CTGCGGTGCGCTCGTACGGCGAGGAGCACAGTATCCCCCCTCCGCCCAAC
GTTCCTTTTGCAAGTCGTCAACCGCCTGCCAACAACAACAACAACAAGTC
ATTACACTCGTATGATTATGCGAGCACGCCCGCCACAAAAGGCGCACAGT
ATGAAAAAGAGCTCAACGGCGTCATCGTGCACGACCAGCATCGTTACACC
GCGCACGTTGGCGAGGCCATCGTCGCCCACGAGCGCTATTCGTCCGCCAC
TTCGCTCACGGACTTGGCGTGA
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Coding sequence (CDS) from alignment at tig00000879_pilon:430985..431806-

>Ggra6290.t1 ID=Ggra6290.t1|Name=Ggra6290.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=822bp|location=Sequence derived from alignment at tig00000879_pilon:430985..431806- (Gracilaria gracilis GNS1m male)
ATGTCCAAGCTGTCGTCCGTGCCGTCGTTCGGCAAGATGGCCGAACCGCT
GTCGGGCAGCTCGGTGCGTCTGCACGACGACCACGCTGCAGCTGCTGCTG
ATGCCGCTGCTGCTGCGGCCGGCGTGAATGCGCACACCGCTGTGCCGCAG
CGCGCGCCGCAGCACGCCGCCGCCGCCGCTCGAGTCACGCCGGCAGAGTA
CGAGGAGTTTGGATCCGAGGCGCTTATCACCAACGTGTACGACGACGTGG
AGGAGGACTTTGACGATGAAGCTACGCCTAGCACCCTCTTCCGCCAAATC
GGTCCTAGCATCAGCATGGCGCACCATATTGACGCGTACCGCCCCGCGCA
ACAACACCCCCACCCCCACTTTGAGCACGTTGAGCACGAGCAGCACGAGC
AGCAGCTTGAGCACGAGCACCTTGATCAACGCCCTCCGCTCTCTCCTTCT
CAACAAATCGGCAACATGCGTGGCGAGACCGGTAAGATTGCCACCCCACC
GCCGCCGCCACCACCACCGCCTCCGCCCCCGCCTCCGCCCCCGCCGCTTA
CTGCGGTGCGCTCGTACGGCGAGGAGCACAGTATCCCCCCTCCGCCCAAC
GTTCCTTTTGCAAGTCGTCAACCGCCTGCCAACAACAACAACAACAAGTC
ATTACACTCGTATGATTATGCGAGCACGCCCGCCACAAAAGGCGCACAGT
ATGAAAAAGAGCTCAACGGCGTCATCGTGCACGACCAGCATCGTTACACC
GCGCACGTTGGCGAGGCCATCGTCGCCCACGAGCGCTATTCGTCCGCCAC
TTCGCTCACGGACTTGGCGTGA
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