Ggra6230.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6230.t1
Unique NameGgra6230.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Homology
BLAST of Ggra6230.t1 vs. uniprot
Match: A0A2V3IJZ2 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJZ2_9FLOR)

HSP 1 Score: 422 bits (1085), Expect = 3.640e-149
Identity = 208/219 (94.98%), Postives = 217/219 (99.09%), Query Frame = 0
Query:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVKAPSENFIAGLGSPSRASLN 219
            MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAK+NVSMYFNCPGGTIPAGLAVYDCMQAMKYP+VTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASD+AIEVRNILNQRNRIIDGLH FTGRSKDQLK+DLSRDMYLTAPEARTYGLIDNVLMP+VK PSE+FIAGLG+P++ASLN
Sbjct:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKANVSMYFNCPGGTIPAGLAVYDCMQAMKYPIVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDIAIEVRNILNQRNRIIDGLHNFTGRSKDQLKQDLSRDMYLTAPEARTYGLIDNVLMPKVKGPSESFIAGLGAPTKASLN 219          
BLAST of Ggra6230.t1 vs. uniprot
Match: R7Q6C3 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6C3_CHOCR)

HSP 1 Score: 381 bits (979), Expect = 2.770e-132
Identity = 185/219 (84.47%), Postives = 202/219 (92.24%), Query Frame = 0
Query:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVKAPSENFIAGLGSPSRASLN 219
            MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGT+PAGLAVYDCM+AMKYPV TLNLGLAASM AFLV AGTKGKRMALPNSRFLLQ+PS+ DTVRGQASD+ IEV+NIL QR+RII+GLH+FTGRS ++LK+DL+RDMYLTAPEARTYGLID VL P VK PSE F+ G+G+P+    N
Sbjct:   47 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTVPAGLAVYDCMRAMKYPVTTLNLGLAASMGAFLVGAGTKGKRMALPNSRFLLQAPSMLDTVRGQASDIKIEVQNILKQRDRIIEGLHEFTGRSHEELKKDLARDMYLTAPEARTYGLIDKVLTPSVKGPSEKFLGGIGAPNIGGFN 265          
BLAST of Ggra6230.t1 vs. uniprot
Match: LOW QUALITY PROTEIN: probable ATP-dependent Clp protease proteolytic subunit 3 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7D3A (LOW QUALITY PROTEIN: probable ATP-dependent Clp protease proteolytic subunit 3 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7D3A)

HSP 1 Score: 325 bits (833), Expect = 9.770e-111
Identity = 157/211 (74.41%), Postives = 183/211 (86.73%), Query Frame = 0
Query:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVKAPSENFIAGLG 211
            MAGGVPKVPYKAPGAQN+EFIDIFNRLYRERIIY+GQDLDDE ANQ IAV+LYLE +D +  +SMYFN PG T+PAGLAVYDCM++M YP+ TLNLGLAASM AFLV AGTKG+RM+LPN+RFLLQ+PS+ D VRGQASDVA+EV+ IL QR+R+IDGL  FTGR +  +K++L RDMYLTAPEAR +GLID VLMP V  PSE F++GLG
Sbjct:    1 MAGGVPKVPYKAPGAQNYEFIDIFNRLYRERIIYIGQDLDDEVANQTIAVMLYLEQEDKEGPISMYFNSPGATVPAGLAVYDCMRSMSYPINTLNLGLAASMCAFLVGAGTKGRRMSLPNARFLLQAPSMYDRVRGQASDVAVEVQEILRQRDRMIDGLVSFTGRDRALVKKELQRDMYLTAPEAREWGLIDQVLMPTVAGPSERFVSGLG 211          
BLAST of Ggra6230.t1 vs. uniprot
Match: A0A1X6PA76 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PA76_PORUM)

HSP 1 Score: 296 bits (757), Expect = 2.030e-97
Identity = 143/216 (66.20%), Postives = 178/216 (82.41%), Query Frame = 0
Query:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVKAPSE--NFIAGLGSPS 214
            MAGGVPKVPYKAPG+Q +EFID+FNRLYRERI+Y+ QD+DDE+ANQ IAVLLYLE +DA + V MYFNC GGT  AGLAV+DCM+++KYP+ TLNLGLAAS+SA LVAAGT GKR +LPN+RFLLQ+P+LP+ +RGQASDVAIEV+ +L QRNR    L+  TG+S+D++KE + RD YL+APEA  +GLID VL P    PS+   + AG+G+PS
Sbjct:  122 MAGGVPKVPYKAPGSQTYEFIDVFNRLYRERIVYINQDMDDETANQTIAVLLYLEQEDATAPVQMYFNCAGGTTAAGLAVWDCMRSVKYPIATLNLGLAASISALLVAAGTPGKRSSLPNARFLLQAPNLPEGMRGQASDVAIEVKEVLRQRNRFAAALNTLTGQSEDKIKEVMQRDFYLSAPEAVQFGLIDKVLQPAPPKPSKAAKYSAGIGAPS 337          
BLAST of Ggra6230.t1 vs. uniprot
Match: A0A7S1ERY9 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ERY9_9RHOD)

HSP 1 Score: 272 bits (695), Expect = 4.210e-89
Identity = 128/209 (61.24%), Postives = 168/209 (80.38%), Query Frame = 0
Query:    3 GGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVKAPSENFIAGLG 211
            GG P+VPYKAPG Q ++F+D+F RL R+RI++VGQD+DDE+ANQ+IA LL+LE++DA S V++YFN  G T  AG AVYDC+Q+MK+P+ TLNLGLAASMSAFL A GTKG R+ALPN+RFL+Q+PSLPD ++GQA D+AIEVR+ L+ R++   GLH+ TGRS +++ EDL RD YLTA EAR YGLID VL P+    + ++  G+G
Sbjct:   57 GGTPRVPYKAPGQQEYQFMDVFERLARDRIMFVGQDIDDETANQMIATLLFLESEDANSPVTIYFNSAGATTNAGFAVYDCLQSMKFPICTLNLGLAASMSAFLCAVGTKGSRLALPNARFLIQAPSLPDGIQGQAEDIAIEVRHTLSMRDKYALGLHKSTGRSLEKIMEDLKRDFYLTAYEAREYGLIDKVLQPKDAVETPSYAGGIG 265          
BLAST of Ggra6230.t1 vs. uniprot
Match: M2WYD7 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WYD7_GALSU)

HSP 1 Score: 267 bits (683), Expect = 3.630e-87
Identity = 124/200 (62.00%), Postives = 160/200 (80.00%), Query Frame = 0
Query:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVK 200
            M GGVPKVPYKAPG QN+EFIDIFNR YRERIIYVGQ++D++ ANQIIA+LL+L+++D ++ V MY NCPGG +  GLAVYDCM +++YP+VT+NLG+AASM AFL AAGT G+R ALPNSR+LLQ P  PD ++GQA DV IE   IL QR  + +   +F+ +S +++++DL RD+YLTA EAR YGL+D VL P+ K
Sbjct:   60 MGGGVPKVPYKAPGQQNYEFIDIFNRFYRERIIYVGQEIDEDQANQIIAILLFLQSEDDQAEVQMYINCPGGFVTPGLAVYDCMCSVRYPIVTVNLGMAASMGAFLAAAGTPGRRFALPNSRYLLQQPLAPDNIKGQAKDVEIEAVQILRQREMLFESYAKFSKQSIERIRDDLRRDLYLTAYEAREYGLVDKVLTPRPK 259          
BLAST of Ggra6230.t1 vs. uniprot
Match: A0A5J4Z4Z8 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z4Z8_PORPP)

HSP 1 Score: 257 bits (656), Expect = 3.070e-83
Identity = 126/212 (59.43%), Postives = 162/212 (76.42%), Query Frame = 0
Query:    1 MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVK-APSENFIAGLG 211
            M  G P+VPYKAPG Q+++FID+F RL R+RI++VGQDLDDE ANQ+IA LLYL  DD +S +++YF CPG     G AV D + ++K P+ TLN+GLAA MSA + AAGTKGKR +LPN+R+L+Q+PSLPD VRGQASDVA+EVR  LNQR++    + +FTGR++  + EDL RDMYLTA EAR YGLID VL P VK   ++ + +GLG
Sbjct:   50 MMAGSPRVPYKAPGQQDYQFIDVFERLMRDRIMFVGQDLDDEIANQMIAQLLYLSADDPESPITLYFQCPGTVTSGGFAVLDALMSLKCPISTLNMGLAAGMSALICAAGTKGKRFSLPNARYLIQAPSLPDLVRGQASDVAVEVRQTLNQRDKYAKLMAKFTGRAESLIMEDLKRDMYLTAYEAREYGLIDQVLQPAVKNLDTQVYASGLG 261          
BLAST of Ggra6230.t1 vs. uniprot
Match: L1IFF6 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IFF6_GUITC)

HSP 1 Score: 256 bits (653), Expect = 1.210e-82
Identity = 126/205 (61.46%), Postives = 156/205 (76.10%), Query Frame = 0
Query:    5 VPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPD-----TVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVKAPSE 204
            VP+VPYKAPG Q ++F+DI+NR+YRERI+Y+GQDLDDE ANQ+IAVLL+L N+DA   V MYFNCPGG + AGLAVYD M  M + V TLNLG+AAS+SAFL  AG KG+RMALPN+RFLLQ+P L D      + GQASDV+IE   IL  R ++  GL +FTGR  + ++ DL+RD+YLTAPEA  YGLID VL+P  +   E
Sbjct:   52 VPRVPYKAPGDQVYQFMDIWNRMYRERILYIGQDLDDEFANQMIAVLLWLNNEDATQGVQMYFNCPGGEVRAGLAVYDTMNNMDFDVTTLNLGIAASISAFLCGAGKKGQRMALPNARFLLQNPKLEDMGLSQVLYGQASDVSIEATEILRMREKVFKGLSRFTGRKYEDIRNDLTRDLYLTAPEAVEYGLIDKVLLPLKRTEQE 256          
BLAST of Ggra6230.t1 vs. uniprot
Match: A0A7S0VXY0 (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VXY0_9CRYP)

HSP 1 Score: 239 bits (611), Expect = 4.130e-76
Identity = 115/198 (58.08%), Postives = 152/198 (76.77%), Query Frame = 0
Query:    5 VPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPD-----TVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMP 197
            VP+VPYKAPG Q+++F+DI+NRLYRERI+Y+GQDLDDE ANQ++AV+L+L  +D   +V +YFNCPGG + AGLAVYD M +  + V TLNLG+AA++SAFL  AG KGKRMALPN+RFLLQ+P L D      + GQASDV IE   IL  R ++  G  +FTG+  + +++DL+RD+YLT+ EA  YGLID +L+P
Sbjct:   63 VPRVPYKAPGEQSYQFMDIWNRLYRERIMYIGQDLDDEFANQMVAVMLWLSQEDDTGDVQLYFNCPGGEVRAGLAVYDTMNSCNFGVQTLNLGIAAAISAFLCGAGDKGKRMALPNARFLLQTPKLEDMGLSQVLYGQASDVKIEAEEILRMREKVYKGYMEFTGKDYETMRKDLTRDLYLTSVEAVEYGLIDKMLLP 260          
BLAST of Ggra6230.t1 vs. uniprot
Match: A0A7S0U8R4 (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U8R4_HEMAN)

HSP 1 Score: 239 bits (609), Expect = 1.130e-75
Identity = 116/198 (58.59%), Postives = 152/198 (76.77%), Query Frame = 0
Query:    5 VPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAVLLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAASMSAFLVAAGTKGKRMALPNSRFLLQSPSLPD-----TVRGQASDVAIEVRNILNQRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMP 197
            VP+VPYKAPG Q+++F+DI+NRLYRERI+Y+GQDLDDE ANQ++AVLL+L  +D  S+V +YFNCPGG + AGLAVYD M++  + V TLNLG+AA++SAFL  AG KGKRMALPN+RFLLQ+P L D      + GQASDV IE   IL  R ++  G   FT +  + +++DL+RD+YLT+ EA  YGLID +L+P
Sbjct:   73 VPRVPYKAPGEQSYQFMDIWNRLYRERIMYIGQDLDDEFANQMVAVLLWLSQEDDTSDVQLYFNCPGGEVRAGLAVYDTMRSCNFGVQTLNLGIAAAISAFLCGAGDKGKRMALPNARFLLQTPKLEDMGLSQVLYGQASDVKIEAEEILRMREKVYKGYMDFTDKDYETIRKDLTRDLYLTSVEAVDYGLIDKMLLP 270          
The following BLAST results are available for this feature:
BLAST of Ggra6230.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IJZ23.640e-14994.98ATP-dependent Clp protease proteolytic subunit n=1... [more]
R7Q6C32.770e-13284.47ATP-dependent Clp protease proteolytic subunit n=1... [more]
LOW QUALITY PROTEIN: probable ATP-dependent Clp protease proteolytic subunit 3 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D7D3A9.770e-11174.41LOW QUALITY PROTEIN: probable ATP-dependent Clp pr... [more]
A0A1X6PA762.030e-9766.20ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S1ERY94.210e-8961.24ATP-dependent Clp protease proteolytic subunit n=1... [more]
M2WYD73.630e-8762.00ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A5J4Z4Z83.070e-8359.43ATP-dependent Clp protease proteolytic subunit n=1... [more]
L1IFF61.210e-8261.46ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0VXY04.130e-7658.08ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S0U8R41.130e-7558.59ATP-dependent Clp protease proteolytic subunit n=2... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001907ATP-dependent Clp protease proteolytic subunitPRINTSPR00127CLPPROTEASEPcoord: 93..110
score: 54.31
coord: 173..192
score: 50.25
coord: 62..82
score: 45.36
coord: 22..37
score: 50.0
coord: 114..133
score: 35.75
IPR001907ATP-dependent Clp protease proteolytic subunitHAMAPMF_00444ClpPcoord: 4..198
score: 33.989258
IPR001907ATP-dependent Clp protease proteolytic subunitCDDcd07017S14_ClpP_2coord: 22..194
e-value: 4.15939E-84
score: 245.429
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPFAMPF00574CLP_proteasecoord: 17..196
e-value: 3.2E-60
score: 203.1
IPR023562Clp protease proteolytic subunit /Translocation-enhancing protein TepAPANTHERPTHR10381ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNITcoord: 16..196
NoneNo IPR availableGENE3D3.90.226.10coord: 5..199
e-value: 1.2E-62
score: 213.2
NoneNo IPR availablePANTHERPTHR10381:SF24ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 4, CHLOROPLASTICcoord: 16..196
IPR029045ClpP/crotonase-like domain superfamilySUPERFAMILY52096ClpP/crotonasecoord: 16..195

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000879_piloncontigtig00000879_pilon:94051..94710 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6230.t1Ggra6230.t1Gracilaria gracilis GNS1m malemRNAtig00000879_pilon 94051..94710 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6230.t1 ID=Ggra6230.t1|Name=Ggra6230.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MAGGVPKVPYKAPGAQNHEFIDIFNRLYRERIIYVGQDLDDESANQIIAV
LLYLENDDAKSNVSMYFNCPGGTIPAGLAVYDCMQAMKYPVVTLNLGLAA
SMSAFLVAAGTKGKRMALPNSRFLLQSPSLPDTVRGQASDVAIEVRNILN
QRNRIIDGLHQFTGRSKDQLKEDLSRDMYLTAPEARTYGLIDNVLMPQVK
APSENFIAGLGSPSRASLN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001907ClpP
IPR023562ClpP/TepA
IPR029045ClpP/crotonase-like_dom_sf