Ggra9522.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9522.t1
Unique Name	Ggra9522.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	494

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:433457..434938 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005703366.1
Preferred name	COQ6
PFAMs	DUF1232,FAD_binding_3
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC02670
KEGG ko	ko:K06126,ko:K21437
KEGG Reaction	R04982,R08773
KEGG Pathway	ko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG Module	M00128
Evalue	3.36e-69
EggNOG OGs	COG0654@1\|root,KOG3855@2759\|Eukaryota
Description	FAD binding
COG category	CH
BRITE	ko00000,ko00001,ko00002,ko01000,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9522	Ggra9522	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 433457..434938 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9522.t1.stop1	Ggra9522.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 433457..433459 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9522.t1.CDS1	Ggra9522.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 433457..434938 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9522.t1.exon1	Ggra9522.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 433457..434938 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9522.t1.start1	Ggra9522.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 434936..434938 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9522.t1	Ggra9522.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 433457..434938 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:433457..434938-
coding sequence from alignment at tig00000873_pilon:433457..434938-

mRNA sequence

>Ggra9522.t1 ID=Ggra9522.t1|Name=Ggra9522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=494bp
MLNADLLVVGGGLVGASLATAVSSHPFARSLRVVLIDPAVPSIESWPSTS
LRTSTITPSSKTFLDDIGVWPRIPDQRVATFDKMFVWDHPQPLPIGEAHT
KASASPAGTIVFDANDIGHECLGYVLDNDTLRNAMFRRMNELLTDGSSGL
QIISGSVKSIDYHDSLPQEPAKPQEGDAPKESINVGDSAPWPVVELESGE
RIRCRLIAACDGSRSRVRTMCDADWFQYGYGQSAVVANVQLKDITTTAYQ
RFVSTGPVAVLPVATEDAVAPVGNVIWTTTPAEARALVAADESDFVNELN
IVLAAHEDEDMITASSFYPNEDERRRTPWHWVVNAMQSAFPNVGMEGDVL
SFIPPPEATSVIGKRGQFPLTLGHSPQYVHHKKRTVLVGDAAHSVHPLAG
QGVNLGFADAQCLADCVASAAGTGRDLGGEMGAPLMRYQSERLVGNLGMM
GVLHGLQQVFGVENSAFRDLRRAGISALNYSSPLKRAILRAMR*

spliced messenger RNA

>Ggra9522.t1 ID=Ggra9522.t1|Name=Ggra9522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000873_pilon:433457..434938- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGAACGCAGACTTGCTCGTCGTGGGGGGAGGCTTGGTCGGCGCCTC
TTTGGCCACTGCTGTGAGTTCGCATCCGTTTGCGAGGAGTTTACGCGTCG
TTTTGATTGATCCAGCTGTGCCTTCGATCGAATCATGGCCTTCCACTTCG
TTGAGAACCTCAACCATCACGCCGTCTTCGAAGACGTTCTTGGATGACAT
CGGTGTGTGGCCCCGCATTCCGGACCAGCGCGTTGCCACTTTCGACAAGA
TGTTTGTTTGGGATCATCCGCAACCTTTGCCAATCGGCGAGGCACACACA
AAGGCGTCCGCATCCCCTGCTGGCACTATTGTATTTGACGCCAATGACAT
TGGCCATGAATGTTTGGGTTATGTTCTGGACAATGACACGCTTCGAAATG
CAATGTTTCGTCGTATGAATGAATTGCTGACTGATGGCAGCTCAGGACTT
CAAATCATATCTGGAAGCGTTAAGTCTATTGATTATCATGATAGTCTACC
TCAGGAACCCGCTAAACCGCAAGAAGGAGATGCACCAAAAGAGTCGATCA
ACGTAGGGGATTCAGCGCCGTGGCCTGTTGTCGAGCTCGAATCCGGTGAA
CGTATTCGTTGTCGGCTTATTGCCGCCTGTGATGGATCTCGCTCGCGTGT
ACGAACTATGTGTGACGCGGACTGGTTTCAATACGGTTACGGGCAAAGCG
CTGTTGTTGCCAATGTTCAACTGAAGGATATTACTACCACCGCATATCAG
CGCTTCGTTTCTACAGGGCCGGTAGCCGTGTTGCCCGTTGCGACGGAAGA
CGCTGTGGCACCTGTTGGGAATGTTATCTGGACGACTACTCCAGCCGAGG
CAAGGGCGCTTGTCGCGGCGGACGAATCTGACTTTGTCAATGAGCTGAAC
ATTGTTCTTGCCGCACATGAAGATGAAGACATGATCACTGCGAGTTCGTT
TTATCCGAATGAAGATGAGCGCCGCCGTACACCATGGCATTGGGTTGTAA
ACGCAATGCAGTCGGCATTCCCGAATGTTGGCATGGAGGGTGACGTGCTT
AGTTTCATACCTCCACCTGAAGCAACCAGTGTTATCGGCAAGCGTGGACA
GTTTCCGTTGACGCTTGGGCACTCCCCCCAGTACGTCCACCACAAGAAGC
GCACTGTTTTAGTCGGAGATGCCGCTCATAGTGTGCATCCGTTGGCTGGA
CAGGGCGTGAATTTGGGTTTCGCAGATGCTCAATGTTTGGCTGACTGCGT
AGCGAGCGCTGCGGGTACAGGGCGAGATCTTGGGGGAGAGATGGGTGCTC
CCTTAATGCGATATCAGTCAGAAAGGCTTGTTGGTAACCTTGGCATGATG
GGAGTTCTGCACGGGCTTCAACAAGTCTTTGGAGTCGAAAACTCGGCTTT
TCGAGATTTGAGACGGGCTGGTATCTCTGCGTTGAATTACTCGAGTCCAC
TGAAAAGAGCTATCCTCAGGGCGATGCGGTAG

protein sequence of Ggra9522.t1

>Ggra9522.t1 ID=Ggra9522.t1|Name=Ggra9522.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=494bp
MLNADLLVVGGGLVGASLATAVSSHPFARSLRVVLIDPAVPSIESWPSTS
LRTSTITPSSKTFLDDIGVWPRIPDQRVATFDKMFVWDHPQPLPIGEAHT
KASASPAGTIVFDANDIGHECLGYVLDNDTLRNAMFRRMNELLTDGSSGL
QIISGSVKSIDYHDSLPQEPAKPQEGDAPKESINVGDSAPWPVVELESGE
RIRCRLIAACDGSRSRVRTMCDADWFQYGYGQSAVVANVQLKDITTTAYQ
RFVSTGPVAVLPVATEDAVAPVGNVIWTTTPAEARALVAADESDFVNELN
IVLAAHEDEDMITASSFYPNEDERRRTPWHWVVNAMQSAFPNVGMEGDVL
SFIPPPEATSVIGKRGQFPLTLGHSPQYVHHKKRTVLVGDAAHSVHPLAG
QGVNLGFADAQCLADCVASAAGTGRDLGGEMGAPLMRYQSERLVGNLGMM
GVLHGLQQVFGVENSAFRDLRRAGISALNYSSPLKRAILRAMR*

mRNA from alignment at tig00000873_pilon:433457..434938-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9522.t1 ID=Ggra9522.t1|Name=Ggra9522.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000873_pilon:433457..434938- (Gracilaria gracilis GNS1m male)
ATGCTGAACGCAGACTTGCTCGTCGTGGGGGGAGGCTTGGTCGGCGCCTC
TTTGGCCACTGCTGTGAGTTCGCATCCGTTTGCGAGGAGTTTACGCGTCG
TTTTGATTGATCCAGCTGTGCCTTCGATCGAATCATGGCCTTCCACTTCG
TTGAGAACCTCAACCATCACGCCGTCTTCGAAGACGTTCTTGGATGACAT
CGGTGTGTGGCCCCGCATTCCGGACCAGCGCGTTGCCACTTTCGACAAGA
TGTTTGTTTGGGATCATCCGCAACCTTTGCCAATCGGCGAGGCACACACA
AAGGCGTCCGCATCCCCTGCTGGCACTATTGTATTTGACGCCAATGACAT
TGGCCATGAATGTTTGGGTTATGTTCTGGACAATGACACGCTTCGAAATG
CAATGTTTCGTCGTATGAATGAATTGCTGACTGATGGCAGCTCAGGACTT
CAAATCATATCTGGAAGCGTTAAGTCTATTGATTATCATGATAGTCTACC
TCAGGAACCCGCTAAACCGCAAGAAGGAGATGCACCAAAAGAGTCGATCA
ACGTAGGGGATTCAGCGCCGTGGCCTGTTGTCGAGCTCGAATCCGGTGAA
CGTATTCGTTGTCGGCTTATTGCCGCCTGTGATGGATCTCGCTCGCGTGT
ACGAACTATGTGTGACGCGGACTGGTTTCAATACGGTTACGGGCAAAGCG
CTGTTGTTGCCAATGTTCAACTGAAGGATATTACTACCACCGCATATCAG
CGCTTCGTTTCTACAGGGCCGGTAGCCGTGTTGCCCGTTGCGACGGAAGA
CGCTGTGGCACCTGTTGGGAATGTTATCTGGACGACTACTCCAGCCGAGG
CAAGGGCGCTTGTCGCGGCGGACGAATCTGACTTTGTCAATGAGCTGAAC
ATTGTTCTTGCCGCACATGAAGATGAAGACATGATCACTGCGAGTTCGTT
TTATCCGAATGAAGATGAGCGCCGCCGTACACCATGGCATTGGGTTGTAA
ACGCAATGCAGTCGGCATTCCCGAATGTTGGCATGGAGGGTGACGTGCTT
AGTTTCATACCTCCACCTGAAGCAACCAGTGTTATCGGCAAGCGTGGACA
GTTTCCGTTGACGCTTGGGCACTCCCCCCAGTACGTCCACCACAAGAAGC
GCACTGTTTTAGTCGGAGATGCCGCTCATAGTGTGCATCCGTTGGCTGGA
CAGGGCGTGAATTTGGGTTTCGCAGATGCTCAATGTTTGGCTGACTGCGT
AGCGAGCGCTGCGGGTACAGGGCGAGATCTTGGGGGAGAGATGGGTGCTC
CCTTAATGCGATATCAGTCAGAAAGGCTTGTTGGTAACCTTGGCATGATG
GGAGTTCTGCACGGGCTTCAACAAGTCTTTGGAGTCGAAAACTCGGCTTT
TCGAGATTTGAGACGGGCTGGTATCTCTGCGTTGAATTACTCGAGTCCAC
TGAAAAGAGCTATCCTCAGGGCGATGCGGTAG

Coding sequence (CDS) from alignment at tig00000873_pilon:433457..434938-

>Ggra9522.t1 ID=Ggra9522.t1|Name=Ggra9522.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000873_pilon:433457..434938- (Gracilaria gracilis GNS1m male)
ATGCTGAACGCAGACTTGCTCGTCGTGGGGGGAGGCTTGGTCGGCGCCTC
TTTGGCCACTGCTGTGAGTTCGCATCCGTTTGCGAGGAGTTTACGCGTCG
TTTTGATTGATCCAGCTGTGCCTTCGATCGAATCATGGCCTTCCACTTCG
TTGAGAACCTCAACCATCACGCCGTCTTCGAAGACGTTCTTGGATGACAT
CGGTGTGTGGCCCCGCATTCCGGACCAGCGCGTTGCCACTTTCGACAAGA
TGTTTGTTTGGGATCATCCGCAACCTTTGCCAATCGGCGAGGCACACACA
AAGGCGTCCGCATCCCCTGCTGGCACTATTGTATTTGACGCCAATGACAT
TGGCCATGAATGTTTGGGTTATGTTCTGGACAATGACACGCTTCGAAATG
CAATGTTTCGTCGTATGAATGAATTGCTGACTGATGGCAGCTCAGGACTT
CAAATCATATCTGGAAGCGTTAAGTCTATTGATTATCATGATAGTCTACC
TCAGGAACCCGCTAAACCGCAAGAAGGAGATGCACCAAAAGAGTCGATCA
ACGTAGGGGATTCAGCGCCGTGGCCTGTTGTCGAGCTCGAATCCGGTGAA
CGTATTCGTTGTCGGCTTATTGCCGCCTGTGATGGATCTCGCTCGCGTGT
ACGAACTATGTGTGACGCGGACTGGTTTCAATACGGTTACGGGCAAAGCG
CTGTTGTTGCCAATGTTCAACTGAAGGATATTACTACCACCGCATATCAG
CGCTTCGTTTCTACAGGGCCGGTAGCCGTGTTGCCCGTTGCGACGGAAGA
CGCTGTGGCACCTGTTGGGAATGTTATCTGGACGACTACTCCAGCCGAGG
CAAGGGCGCTTGTCGCGGCGGACGAATCTGACTTTGTCAATGAGCTGAAC
ATTGTTCTTGCCGCACATGAAGATGAAGACATGATCACTGCGAGTTCGTT
TTATCCGAATGAAGATGAGCGCCGCCGTACACCATGGCATTGGGTTGTAA
ACGCAATGCAGTCGGCATTCCCGAATGTTGGCATGGAGGGTGACGTGCTT
AGTTTCATACCTCCACCTGAAGCAACCAGTGTTATCGGCAAGCGTGGACA
GTTTCCGTTGACGCTTGGGCACTCCCCCCAGTACGTCCACCACAAGAAGC
GCACTGTTTTAGTCGGAGATGCCGCTCATAGTGTGCATCCGTTGGCTGGA
CAGGGCGTGAATTTGGGTTTCGCAGATGCTCAATGTTTGGCTGACTGCGT
AGCGAGCGCTGCGGGTACAGGGCGAGATCTTGGGGGAGAGATGGGTGCTC
CCTTAATGCGATATCAGTCAGAAAGGCTTGTTGGTAACCTTGGCATGATG
GGAGTTCTGCACGGGCTTCAACAAGTCTTTGGAGTCGAAAACTCGGCTTT
TCGAGATTTGAGACGGGCTGGTATCTCTGCGTTGAATTACTCGAGTCCAC
TGAAAAGAGCTATCCTCAGGGCGATGCGGTAG