Ggra1005.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra1005.t1
Unique Name	Ggra1005.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000027_pilon	contig	tig00000027_pilon:142038..143039 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3847.GLYMA19G30720.1
PFAMs	Cyclin_C,Cyclin_N
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K21777
GOs	GO:0001558,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009314,GO:0009628,GO:0010212,GO:0010332,GO:0040008,GO:0044424,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0065007
Evalue	2.15e-46
EggNOG OGs	COG5024@1\|root,KOG0653@2759\|Eukaryota,37K6W@33090\|Viridiplantae,3G7ME@35493\|Streptophyta,4JHE6@91835\|fabids
Description	Belongs to the cyclin family
COG category	D
BRITE	ko00000,ko03032,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra1005	Ggra1005	Gracilaria gracilis GNS1m male	gene	tig00000027_pilon 142038..143039 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1005.t1.start1	Ggra1005.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000027_pilon 142038..142040 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1005.t1.CDS1	Ggra1005.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000027_pilon 142038..143039 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1005.t1.exon1	Ggra1005.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000027_pilon 142038..143039 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1005.t1.stop1	Ggra1005.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000027_pilon 143037..143039 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra1005.t1	Ggra1005.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000027_pilon 142038..143039 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000027_pilon:142038..143039+
coding sequence from alignment at tig00000027_pilon:142038..143039+

mRNA sequence

>Ggra1005.t1 ID=Ggra1005.t1|Name=Ggra1005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=334bp
MPKRALGDITNRQPARSVAAKAKRAAEPQNFTAPKRMCKASSKPFNSNLP
SKTTGSTTNVDVIDIDASDKLNRVEGSDFAFDIHKNHLLAEKEHYPESDY
LDSHRTVTRKMRAILVDWLADVCVSLKLSDGTLHLCVYILDRFLQTYDAT
RSTLQMVGSVCLYIAAKYEEIYAPEAGDFVTLSDGAFSKDDVIIMEATIL
NSLHFQVTIPYCLTFLARIGKTIGAKGVKAAVTQEVLSRAQMFVEMAMVD
GRYMKYRPSHLAAAAVLLALDTLNVGISWCKSLAFHSGWSKEALLTCVED
LRELIDNDNKVLSFTSRSRSLSAIGRKFLGEQR*

spliced messenger RNA

>Ggra1005.t1 ID=Ggra1005.t1|Name=Ggra1005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000027_pilon:142038..143039+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAGCGCGCCTTGGGAGATATCACAAATCGTCAGCCTGCCCGCAG
TGTCGCAGCCAAGGCCAAGCGTGCTGCCGAGCCTCAGAATTTTACGGCTC
CGAAACGAATGTGCAAGGCGAGTTCCAAACCGTTTAACTCAAATCTGCCG
TCCAAAACTACCGGCTCCACCACGAATGTGGACGTCATTGACATTGATGC
GTCTGACAAGCTGAACCGTGTAGAAGGAAGCGATTTCGCCTTTGACATCC
ACAAGAACCATCTTCTGGCTGAGAAAGAACATTATCCTGAGAGCGACTAC
CTAGATTCGCACAGGACAGTGACCAGAAAGATGAGGGCCATTTTAGTGGA
CTGGTTGGCGGATGTGTGCGTTAGTCTCAAGCTGTCTGACGGTACCCTGC
ACCTTTGTGTGTACATCTTGGACCGCTTCTTACAGACTTACGACGCCACG
CGTTCAACTCTACAAATGGTGGGCAGTGTGTGTCTGTATATTGCCGCCAA
GTACGAAGAGATCTACGCACCGGAGGCGGGTGACTTTGTCACTCTTTCGG
ACGGGGCCTTCAGCAAAGACGATGTGATAATCATGGAAGCGACTATCCTC
AACTCTCTGCACTTTCAAGTAACCATCCCGTACTGTCTTACATTTCTGGC
ACGCATTGGGAAGACGATTGGGGCAAAGGGTGTGAAGGCGGCAGTGACTC
AAGAAGTCTTGAGTCGGGCTCAAATGTTTGTCGAGATGGCGATGGTGGAC
GGTCGTTACATGAAGTATCGTCCGAGTCATCTAGCAGCGGCTGCAGTTCT
GTTAGCGCTGGATACACTGAACGTCGGTATCAGCTGGTGTAAGAGCCTTG
CGTTCCACTCCGGGTGGAGCAAGGAAGCGCTTCTTACATGCGTGGAAGAC
CTCAGAGAATTGATAGACAATGACAATAAGGTTTTGTCTTTTACATCGAG
AAGTAGAAGTCTTAGCGCCATTGGAAGAAAGTTCCTAGGCGAGCAAAGAT
AA

protein sequence of Ggra1005.t1

>Ggra1005.t1 ID=Ggra1005.t1|Name=Ggra1005.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=334bp
MPKRALGDITNRQPARSVAAKAKRAAEPQNFTAPKRMCKASSKPFNSNLP
SKTTGSTTNVDVIDIDASDKLNRVEGSDFAFDIHKNHLLAEKEHYPESDY
LDSHRTVTRKMRAILVDWLADVCVSLKLSDGTLHLCVYILDRFLQTYDAT
RSTLQMVGSVCLYIAAKYEEIYAPEAGDFVTLSDGAFSKDDVIIMEATIL
NSLHFQVTIPYCLTFLARIGKTIGAKGVKAAVTQEVLSRAQMFVEMAMVD
GRYMKYRPSHLAAAAVLLALDTLNVGISWCKSLAFHSGWSKEALLTCVED
LRELIDNDNKVLSFTSRSRSLSAIGRKFLGEQR*

mRNA from alignment at tig00000027_pilon:142038..143039+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra1005.t1 ID=Ggra1005.t1|Name=Ggra1005.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1002bp|location=Sequence derived from alignment at tig00000027_pilon:142038..143039+ (Gracilaria gracilis GNS1m male)
ATGCCAAAGCGCGCCTTGGGAGATATCACAAATCGTCAGCCTGCCCGCAG
TGTCGCAGCCAAGGCCAAGCGTGCTGCCGAGCCTCAGAATTTTACGGCTC
CGAAACGAATGTGCAAGGCGAGTTCCAAACCGTTTAACTCAAATCTGCCG
TCCAAAACTACCGGCTCCACCACGAATGTGGACGTCATTGACATTGATGC
GTCTGACAAGCTGAACCGTGTAGAAGGAAGCGATTTCGCCTTTGACATCC
ACAAGAACCATCTTCTGGCTGAGAAAGAACATTATCCTGAGAGCGACTAC
CTAGATTCGCACAGGACAGTGACCAGAAAGATGAGGGCCATTTTAGTGGA
CTGGTTGGCGGATGTGTGCGTTAGTCTCAAGCTGTCTGACGGTACCCTGC
ACCTTTGTGTGTACATCTTGGACCGCTTCTTACAGACTTACGACGCCACG
CGTTCAACTCTACAAATGGTGGGCAGTGTGTGTCTGTATATTGCCGCCAA
GTACGAAGAGATCTACGCACCGGAGGCGGGTGACTTTGTCACTCTTTCGG
ACGGGGCCTTCAGCAAAGACGATGTGATAATCATGGAAGCGACTATCCTC
AACTCTCTGCACTTTCAAGTAACCATCCCGTACTGTCTTACATTTCTGGC
ACGCATTGGGAAGACGATTGGGGCAAAGGGTGTGAAGGCGGCAGTGACTC
AAGAAGTCTTGAGTCGGGCTCAAATGTTTGTCGAGATGGCGATGGTGGAC
GGTCGTTACATGAAGTATCGTCCGAGTCATCTAGCAGCGGCTGCAGTTCT
GTTAGCGCTGGATACACTGAACGTCGGTATCAGCTGGTGTAAGAGCCTTG
CGTTCCACTCCGGGTGGAGCAAGGAAGCGCTTCTTACATGCGTGGAAGAC
CTCAGAGAATTGATAGACAATGACAATAAGGTTTTGTCTTTTACATCGAG
AAGTAGAAGTCTTAGCGCCATTGGAAGAAAGTTCCTAGGCGAGCAAAGAT
AA

Coding sequence (CDS) from alignment at tig00000027_pilon:142038..143039+

>Ggra1005.t1 ID=Ggra1005.t1|Name=Ggra1005.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1002bp|location=Sequence derived from alignment at tig00000027_pilon:142038..143039+ (Gracilaria gracilis GNS1m male)
ATGCCAAAGCGCGCCTTGGGAGATATCACAAATCGTCAGCCTGCCCGCAG
TGTCGCAGCCAAGGCCAAGCGTGCTGCCGAGCCTCAGAATTTTACGGCTC
CGAAACGAATGTGCAAGGCGAGTTCCAAACCGTTTAACTCAAATCTGCCG
TCCAAAACTACCGGCTCCACCACGAATGTGGACGTCATTGACATTGATGC
GTCTGACAAGCTGAACCGTGTAGAAGGAAGCGATTTCGCCTTTGACATCC
ACAAGAACCATCTTCTGGCTGAGAAAGAACATTATCCTGAGAGCGACTAC
CTAGATTCGCACAGGACAGTGACCAGAAAGATGAGGGCCATTTTAGTGGA
CTGGTTGGCGGATGTGTGCGTTAGTCTCAAGCTGTCTGACGGTACCCTGC
ACCTTTGTGTGTACATCTTGGACCGCTTCTTACAGACTTACGACGCCACG
CGTTCAACTCTACAAATGGTGGGCAGTGTGTGTCTGTATATTGCCGCCAA
GTACGAAGAGATCTACGCACCGGAGGCGGGTGACTTTGTCACTCTTTCGG
ACGGGGCCTTCAGCAAAGACGATGTGATAATCATGGAAGCGACTATCCTC
AACTCTCTGCACTTTCAAGTAACCATCCCGTACTGTCTTACATTTCTGGC
ACGCATTGGGAAGACGATTGGGGCAAAGGGTGTGAAGGCGGCAGTGACTC
AAGAAGTCTTGAGTCGGGCTCAAATGTTTGTCGAGATGGCGATGGTGGAC
GGTCGTTACATGAAGTATCGTCCGAGTCATCTAGCAGCGGCTGCAGTTCT
GTTAGCGCTGGATACACTGAACGTCGGTATCAGCTGGTGTAAGAGCCTTG
CGTTCCACTCCGGGTGGAGCAAGGAAGCGCTTCTTACATGCGTGGAAGAC
CTCAGAGAATTGATAGACAATGACAATAAGGTTTTGTCTTTTACATCGAG
AAGTAGAAGTCTTAGCGCCATTGGAAGAAAGTTCCTAGGCGAGCAAAGAT
AA