Ggra9513.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9513.t1
Unique NameGgra9513.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length220
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:408041..408700 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog400682.PAC_15726219
PFAMsMethyltransf_11,Methyltransf_25
Max annot lvl33208|Metazoa
Evalue5.91e-23
EggNOG OGsCOG0500@1|root,KOG1541@2759|Eukaryota,3A06N@33154|Opisthokonta,3BUH6@33208|Metazoa
DescriptionubiE/COQ5 methyltransferase family
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9513Ggra9513Gracilaria gracilis GNS1m malegenetig00000873_pilon 408041..408700 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9513.t1.stop1Ggra9513.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 408041..408043 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9513.t1.CDS1Ggra9513.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 408041..408700 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9513.t1.exon1Ggra9513.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 408041..408700 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9513.t1.start1Ggra9513.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 408698..408700 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9513.t1Ggra9513.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 408041..408700 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9513.t1 ID=Ggra9513.t1|Name=Ggra9513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=220bp
MANSKDTKTFSTKPYEFIISSISKEEKVANYNDWAPAYEKDLETDEVYWW
NIGTTKLFNLIKANHYRINKPVIVDAGCGTGTAGVLLRRLTDEFALPVSL
IGYDYSEGMLAEARKKNAYHQLSVGDFFGEVPIEDESADFLICAGVFLDG
HVGPEAMLKVLSHLKKGGMGVITIRITSYEAKKAEYESLIDQGGCVISDL
SIDNYLGSVKGAYVTVQKV*
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spliced messenger RNA

>Ggra9513.t1 ID=Ggra9513.t1|Name=Ggra9513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000873_pilon:408041..408700- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAAACTCCAAGGATACGAAGACGTTCAGCACCAAGCCGTACGAATT
CATCATATCATCAATTTCTAAAGAGGAAAAAGTGGCAAACTACAACGACT
GGGCACCGGCATATGAGAAAGACTTGGAGACTGACGAGGTGTACTGGTGG
AATATCGGTACCACGAAACTGTTCAACTTAATTAAAGCCAACCATTATCG
CATAAACAAACCGGTAATTGTGGACGCCGGATGCGGAACCGGGACGGCTG
GCGTTCTGCTTCGAAGGCTCACAGACGAATTTGCGTTACCAGTTTCACTT
ATTGGGTACGACTACAGTGAAGGGATGCTTGCAGAGGCTCGGAAGAAGAA
CGCTTACCATCAATTGTCCGTGGGTGATTTCTTTGGTGAAGTGCCTATTG
AAGATGAGAGCGCTGACTTTCTTATCTGCGCTGGAGTGTTCTTGGACGGC
CACGTTGGTCCAGAAGCAATGTTGAAGGTTTTGAGTCATTTGAAAAAGGG
GGGGATGGGCGTTATCACGATTCGAATCACTTCGTATGAAGCCAAGAAAG
CAGAGTATGAGTCTTTGATCGACCAGGGCGGGTGTGTGATAAGTGATCTT
TCGATTGATAATTATCTTGGGTCAGTGAAGGGCGCTTACGTTACAGTGCA
GAAGGTCTAG
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protein sequence of Ggra9513.t1

>Ggra9513.t1 ID=Ggra9513.t1|Name=Ggra9513.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=220bp
MANSKDTKTFSTKPYEFIISSISKEEKVANYNDWAPAYEKDLETDEVYWW
NIGTTKLFNLIKANHYRINKPVIVDAGCGTGTAGVLLRRLTDEFALPVSL
IGYDYSEGMLAEARKKNAYHQLSVGDFFGEVPIEDESADFLICAGVFLDG
HVGPEAMLKVLSHLKKGGMGVITIRITSYEAKKAEYESLIDQGGCVISDL
SIDNYLGSVKGAYVTVQKV*
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mRNA from alignment at tig00000873_pilon:408041..408700-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9513.t1 ID=Ggra9513.t1|Name=Ggra9513.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=660bp|location=Sequence derived from alignment at tig00000873_pilon:408041..408700- (Gracilaria gracilis GNS1m male)
ATGGCAAACTCCAAGGATACGAAGACGTTCAGCACCAAGCCGTACGAATT
CATCATATCATCAATTTCTAAAGAGGAAAAAGTGGCAAACTACAACGACT
GGGCACCGGCATATGAGAAAGACTTGGAGACTGACGAGGTGTACTGGTGG
AATATCGGTACCACGAAACTGTTCAACTTAATTAAAGCCAACCATTATCG
CATAAACAAACCGGTAATTGTGGACGCCGGATGCGGAACCGGGACGGCTG
GCGTTCTGCTTCGAAGGCTCACAGACGAATTTGCGTTACCAGTTTCACTT
ATTGGGTACGACTACAGTGAAGGGATGCTTGCAGAGGCTCGGAAGAAGAA
CGCTTACCATCAATTGTCCGTGGGTGATTTCTTTGGTGAAGTGCCTATTG
AAGATGAGAGCGCTGACTTTCTTATCTGCGCTGGAGTGTTCTTGGACGGC
CACGTTGGTCCAGAAGCAATGTTGAAGGTTTTGAGTCATTTGAAAAAGGG
GGGGATGGGCGTTATCACGATTCGAATCACTTCGTATGAAGCCAAGAAAG
CAGAGTATGAGTCTTTGATCGACCAGGGCGGGTGTGTGATAAGTGATCTT
TCGATTGATAATTATCTTGGGTCAGTGAAGGGCGCTTACGTTACAGTGCA
GAAGGTCTAG
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Coding sequence (CDS) from alignment at tig00000873_pilon:408041..408700-

>Ggra9513.t1 ID=Ggra9513.t1|Name=Ggra9513.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=660bp|location=Sequence derived from alignment at tig00000873_pilon:408041..408700- (Gracilaria gracilis GNS1m male)
ATGGCAAACTCCAAGGATACGAAGACGTTCAGCACCAAGCCGTACGAATT
CATCATATCATCAATTTCTAAAGAGGAAAAAGTGGCAAACTACAACGACT
GGGCACCGGCATATGAGAAAGACTTGGAGACTGACGAGGTGTACTGGTGG
AATATCGGTACCACGAAACTGTTCAACTTAATTAAAGCCAACCATTATCG
CATAAACAAACCGGTAATTGTGGACGCCGGATGCGGAACCGGGACGGCTG
GCGTTCTGCTTCGAAGGCTCACAGACGAATTTGCGTTACCAGTTTCACTT
ATTGGGTACGACTACAGTGAAGGGATGCTTGCAGAGGCTCGGAAGAAGAA
CGCTTACCATCAATTGTCCGTGGGTGATTTCTTTGGTGAAGTGCCTATTG
AAGATGAGAGCGCTGACTTTCTTATCTGCGCTGGAGTGTTCTTGGACGGC
CACGTTGGTCCAGAAGCAATGTTGAAGGTTTTGAGTCATTTGAAAAAGGG
GGGGATGGGCGTTATCACGATTCGAATCACTTCGTATGAAGCCAAGAAAG
CAGAGTATGAGTCTTTGATCGACCAGGGCGGGTGTGTGATAAGTGATCTT
TCGATTGATAATTATCTTGGGTCAGTGAAGGGCGCTTACGTTACAGTGCA
GAAGGTCTAG
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