Ggra9502.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9502.t1
Unique NameGgra9502.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length169
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:329621..330127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog4792.ETI56494
Max annot lvl4776|Peronosporales
Evalue2.63e-10
EggNOG OGs2CTDP@1|root,2RFZI@2759|Eukaryota,3QHHE@4776|Peronosporales
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9502Ggra9502Gracilaria gracilis GNS1m malegenetig00000873_pilon 329621..330127 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9502.t1.stop1Ggra9502.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 329621..329623 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9502.t1.CDS1Ggra9502.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 329621..330127 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9502.t1.exon1Ggra9502.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 329621..330127 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9502.t1.start1Ggra9502.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 330125..330127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9502.t1Ggra9502.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 329621..330127 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9502.t1 ID=Ggra9502.t1|Name=Ggra9502.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=169bp
MTSPENREFYYQTGLSGKRYSEIWAALSGTRKRRQRVEDCDSEWFNKPIP
GNQLITELEHELSAINRVYLHVVGQTVFSLDDDHQRLRSRAVTELTNLSH
VNNTQKALGPVNNALCSALTSGFISSHYSRPGEKLIHVLERLVQLFQGAA
TPGSIKPMTEAIFAADRG*
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spliced messenger RNA

>Ggra9502.t1 ID=Ggra9502.t1|Name=Ggra9502.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000873_pilon:329621..330127- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATCTCCTGAAAATCGGGAGTTCTACTATCAGACAGGTCTGTCGGG
GAAACGATACAGTGAGATATGGGCTGCTCTCAGTGGGACGAGGAAACGAC
GACAACGTGTCGAAGACTGTGACAGTGAATGGTTCAATAAACCCATTCCG
GGAAACCAACTCATCACTGAGCTGGAGCATGAACTTTCCGCAATCAACAG
AGTGTATCTCCATGTTGTGGGGCAGACGGTTTTCAGCTTGGATGACGATC
ATCAAAGGCTGCGTTCTCGTGCTGTAACGGAGCTGACAAACTTGTCGCAT
GTCAACAATACGCAGAAGGCCCTCGGACCAGTTAACAACGCTTTGTGTTC
TGCTTTAACATCAGGATTTATTTCCAGTCACTATTCAAGACCAGGTGAAA
AGCTGATTCATGTGTTGGAACGCTTAGTGCAGCTCTTCCAAGGCGCTGCA
ACTCCAGGCTCTATAAAGCCAATGACGGAGGCTATTTTTGCCGCCGACAG
AGGTTAG
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protein sequence of Ggra9502.t1

>Ggra9502.t1 ID=Ggra9502.t1|Name=Ggra9502.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=169bp
MTSPENREFYYQTGLSGKRYSEIWAALSGTRKRRQRVEDCDSEWFNKPIP
GNQLITELEHELSAINRVYLHVVGQTVFSLDDDHQRLRSRAVTELTNLSH
VNNTQKALGPVNNALCSALTSGFISSHYSRPGEKLIHVLERLVQLFQGAA
TPGSIKPMTEAIFAADRG*
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mRNA from alignment at tig00000873_pilon:329621..330127-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9502.t1 ID=Ggra9502.t1|Name=Ggra9502.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=507bp|location=Sequence derived from alignment at tig00000873_pilon:329621..330127- (Gracilaria gracilis GNS1m male)
ATGACATCTCCTGAAAATCGGGAGTTCTACTATCAGACAGGTCTGTCGGG
GAAACGATACAGTGAGATATGGGCTGCTCTCAGTGGGACGAGGAAACGAC
GACAACGTGTCGAAGACTGTGACAGTGAATGGTTCAATAAACCCATTCCG
GGAAACCAACTCATCACTGAGCTGGAGCATGAACTTTCCGCAATCAACAG
AGTGTATCTCCATGTTGTGGGGCAGACGGTTTTCAGCTTGGATGACGATC
ATCAAAGGCTGCGTTCTCGTGCTGTAACGGAGCTGACAAACTTGTCGCAT
GTCAACAATACGCAGAAGGCCCTCGGACCAGTTAACAACGCTTTGTGTTC
TGCTTTAACATCAGGATTTATTTCCAGTCACTATTCAAGACCAGGTGAAA
AGCTGATTCATGTGTTGGAACGCTTAGTGCAGCTCTTCCAAGGCGCTGCA
ACTCCAGGCTCTATAAAGCCAATGACGGAGGCTATTTTTGCCGCCGACAG
AGGTTAG
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Coding sequence (CDS) from alignment at tig00000873_pilon:329621..330127-

>Ggra9502.t1 ID=Ggra9502.t1|Name=Ggra9502.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=507bp|location=Sequence derived from alignment at tig00000873_pilon:329621..330127- (Gracilaria gracilis GNS1m male)
ATGACATCTCCTGAAAATCGGGAGTTCTACTATCAGACAGGTCTGTCGGG
GAAACGATACAGTGAGATATGGGCTGCTCTCAGTGGGACGAGGAAACGAC
GACAACGTGTCGAAGACTGTGACAGTGAATGGTTCAATAAACCCATTCCG
GGAAACCAACTCATCACTGAGCTGGAGCATGAACTTTCCGCAATCAACAG
AGTGTATCTCCATGTTGTGGGGCAGACGGTTTTCAGCTTGGATGACGATC
ATCAAAGGCTGCGTTCTCGTGCTGTAACGGAGCTGACAAACTTGTCGCAT
GTCAACAATACGCAGAAGGCCCTCGGACCAGTTAACAACGCTTTGTGTTC
TGCTTTAACATCAGGATTTATTTCCAGTCACTATTCAAGACCAGGTGAAA
AGCTGATTCATGTGTTGGAACGCTTAGTGCAGCTCTTCCAAGGCGCTGCA
ACTCCAGGCTCTATAAAGCCAATGACGGAGGCTATTTTTGCCGCCGACAG
AGGTTAG
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