Ggra9481.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9481.t1
Unique NameGgra9481.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Homology
BLAST of Ggra9481.t1 vs. uniprot
Match: A0A2V3IMD4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMD4_9FLOR)

HSP 1 Score: 244 bits (622), Expect = 4.760e-73
Identity = 121/294 (41.16%), Postives = 177/294 (60.20%), Query Frame = 0
Query:   18 TTSATAAAKSSRGALKGRALRCCVMHEPPIASLSNPTWINHGLQGIAASYVAQLQAYLNWTCSSVTPFDHGSCTAFSTFTHMMQRCSKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVPLQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQPFHPLPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLDD---NRNGVQWCIDIIQVVCSLFLLMVYGASMSASLENVPITSDLRDAGDFKSCEIRPSDVCTLKGWLF 308
            T  A AA  ++RG L G  LRCC+++EPPIA L++  + N G+ GI A+Y+ Q+Q +LNWTCSSV  +  GS T F+ F  MM+RCS+NG+++  P C+CDIGIGGWF  S RF +VD+LPPF Y++  V+  +  +       FF+T+F +  W+ I   +  F  +R+          + PL  T T  + I+HFL  HPF YR+R S++   SRMI  P+ +D     N   W +  +  +C LFL++ Y ASM+AS+    +TS+ +   DF++C I P DVC  +G  F
Sbjct:   18 TLCAEAARFNARGVLAGAKLRCCIVYEPPIAFLNDRNYANLGIDGIIANYLNQMQGFLNWTCSSVQRYSDGSTTGFNNFITMMERCSENGTIKDDPHCKCDIGIGGWFTNSKRFGRVDFLPPFVYDSYQVIFHISDSKVSGRSPFFITTFDSRGWLCIFGLVLLFATIRMFS-AFGDHARYQPLEPTVTPIRRIAHFLYNHPFFYRLRISIQRIFSRMILMPEPEDFSRPNNTFLWILKTVVTICGLFLILAYEASMTASIVQETVTSEFQSGKDFQTCRIDPKDVCLPRGGSF 310          
BLAST of Ggra9481.t1 vs. uniprot
Match: A0A2V3IME4 (Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME4_9FLOR)

HSP 1 Score: 221 bits (562), Expect = 8.150e-65
Identity = 111/275 (40.36%), Postives = 157/275 (57.09%), Query Frame = 0
Query:   30 GALKGRALRCCVMHEPPIASLSNPTWINHGLQGIAASYVAQLQAYLNWTCSSVTPFDHGSCTAFSTFTHMMQRCSKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVPLQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQPFHPLPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLDDNRNGV---QWCIDIIQVVCSLFLLMVYGASMSASLENVPITSDLRDAGDFKSCEIRPSDVC 301
            GAL G  LRCC++ EPPIA + + T+ N G+ GI A Y+ ++Q YLNW+CSSV  +  G  T+F+ F  MM+ CS+NG+VR  P C CDIGI GWFQ   RF +VD+LPPF  +   VV  +  +       FF+T+F    WV I   +  F  ++  D +  P   F  L  T    +   H LM +P  YR R +++ T SRMI  PD D   N     QW ++ +  V  LFL++ Y ASM+ASL    +++  +   DF++C I P++VC
Sbjct:   30 GALSGLQLRCCILDEPPIAFIDDRTYANGGVSGIIAQYLREMQGYLNWSCSSVQHYTGGKQTSFNHFVRMMEDCSENGAVRNDPGCTCDIGISGWFQNHHRFRRVDFLPPFVTDGYEVVFHISNSEVSGRRMFFITTFDRLAWVSIFGLMLLFSAIKFFDRKFCPIDSFEALEETNPRIQRFVHVLMKYPTLYRFRRALQSTFSRMILLPDSDVVENQTANRQWVLNTVISVSGLFLILSYEASMTASLVQETVSAGFQSIQDFQTCRISPAEVC 304          
BLAST of Ggra9481.t1 vs. uniprot
Match: A0A2V3IUK7 (Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUK7_9FLOR)

HSP 1 Score: 194 bits (492), Expect = 1.270e-54
Identity = 102/278 (36.69%), Postives = 156/278 (56.12%), Query Frame = 0
Query:   31 ALKGRALRCCVMHEPPIASLSNPTWINHGLQGIAASYVAQLQAYLNWTCSSVTPFDHGSCTAFSTFTHMMQRCSKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVPLQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQPFHPLPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLD--DNRNGVQ-WCIDIIQVVCSLFLLMVYGASMSASLENVPITSDLRDAGDFKSCEIRPSDVCTLKG 305
            AL G  LRCCV+HEPPI  L   T+ N+G+ GI   Y+ ++QA L+W CS   P+  G  T+F+ F  MM  C++NG+++  P CRC+IGIGGWF ++ R  +VD LPPF Y+ I V   +  T       FF+T+F    W+ +   I  F L + LD + AP        +  ++ +C+ HFL  +    R+  S+R T  R++   D D   N++G   + +++I  +  L +++ Y ASM+A+L    + SD +   D K+C I+P DVC   G
Sbjct:   29 ALSGTELRCCVIHEPPIVYLDPNTYSNNGINGIITKYLTEMQALLDWQCSEFIPYVEGDGTSFNRFIDMMDNCTQNGAIKDDPACRCEIGIGGWFNSADRDERVDLLPPFVYDGIRVTFHVSNTRRSGSKLFFVTTFDLRSWLCLFAIIILFALAKFLDERFAPIPSADEPNAANSWGRCL-HFLRTNW--NRLITSIRSTTLRIVLQSDHDIVQNQHGAHNFNLNLIIGIFGLLVVLSYEASMTATLVQETVVSDYQSVEDLKTCRIKPEDVCVPGG 303          
BLAST of Ggra9481.t1 vs. uniprot
Match: R7Q0P8 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q0P8_CHOCR)

HSP 1 Score: 135 bits (341), Expect = 1.870e-34
Identity = 64/185 (34.59%), Postives = 110/185 (59.46%), Query Frame = 0
Query:   93 FSTFTHMMQRC-SKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVPLQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQP-FHPLPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLD---DNRNGVQWCIDIIQVVCSLFLLMVYGASMS 272
            F++    M RC ++ G++R+ P C CD+ +GGW ++ TR  +VD+LPPF  + IG+   +  T+      FFLT+F  +VW L+ +    F  L++LD +  P    + PLP++E   + I H+L+    PYR+R +++ TLSRM+   + D   D  +  QW ++++   CSLF+++ Y +SM+
Sbjct:   93 FNSIVEKMDRCVTEEGTMREDPDCNCDMAVGGWMESDTRLGKVDFLPPFLIDGIGIATHVDETSVASAGAFFLTAFSLAVWGLVVMLSVVFTFLKMLDRRFVPPDDSYTPLPASEPRLRRIRHYLLKSRIPYRLRKALQSTLSRMVGFSNSDPVTDKESSRQWVLNLVIACCSLFIILAYESSMT 277          
The following BLAST results are available for this feature:
BLAST of Ggra9481.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IMD44.760e-7341.16Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IME48.150e-6540.36Glutamate receptor 1 n=1 Tax=Gracilariopsis chorda... [more]
A0A2V3IUK71.270e-5436.69Glutamate receptor ionotropic, NMDA 2C n=1 Tax=Gra... [more]
R7Q0P81.870e-3434.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 30..180
e-value: 4.1E-5
score: 25.0
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 270..308
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 161..185
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 186..249
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..25
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 250..269
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 26..160
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..25
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 9..179
NoneNo IPR availableTMHMMTMhelixcoord: 162..184
NoneNo IPR availableTMHMMTMhelixcoord: 5..24

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:27645..28655 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9481.t1Ggra9481.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 27645..28655 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9481.t1 ID=Ggra9481.t1|Name=Ggra9481.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MSPTFLIALALVCTLLSTTSATAAAKSSRGALKGRALRCCVMHEPPIASL
SNPTWINHGLQGIAASYVAQLQAYLNWTCSSVTPFDHGSCTAFSTFTHMM
QRCSKNGSVRQQPQCRCDIGIGGWFQTSTRFHQVDYLPPFSYNAIGVVVP
LQYTATDLEPYFFLTSFHTSVWVLIAVQIFAFVLLRLLDPQLAPTQPFHP
LPSTETYFKCISHFLMCHPFPYRVRHSVRITLSRMIFAPDLDDNRNGVQW
CIDIIQVVCSLFLLMVYGASMSASLENVPITSDLRDAGDFKSCEIRPSDV
CTLKGWLF*
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