Ggra9520.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9520.t1
Unique NameGgra9520.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length337
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:428538..429548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7739.XP_002590849.1
Preferred nameSRR
PFAMsPALP
Max annot lvl33208|Metazoa
KEGG rclassRC00302,RC00418,RC02600
KEGG koko:K01754,ko:K12235
KEGG ReactionR00220,R00589,R00996
KEGG Pathwayko00260,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
GOsGO:0000166,GO:0000287,GO:0002237,GO:0003674,GO:0003824,GO:0003941,GO:0005488,GO:0005509,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006082,GO:0006090,GO:0006520,GO:0006563,GO:0006564,GO:0006807,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0008721,GO:0009058,GO:0009069,GO:0009070,GO:0009410,GO:0009605,GO:0009607,GO:0009617,GO:0009987,GO:0010033,GO:0010243,GO:0014070,GO:0014072,GO:0016020,GO:0016043,GO:0016053,GO:0016594,GO:0016597,GO:0016829,GO:0016840,GO:0016841,GO:0016853,GO:0016854,GO:0016855,GO:0017076,GO:0017144,GO:0018114,GO:0019752,GO:0019842,GO:0019904,GO:0022607,GO:0030165,GO:0030170,GO:0030378,GO:0030554,GO:0031406,GO:0032496,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033993,GO:0035639,GO:0036094,GO:0036361,GO:0036477,GO:0042165,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042866,GO:0043025,GO:0043167,GO:0043168,GO:0043169,GO:0043177,GO:0043207,GO:0043278,GO:0043279,GO:0043436,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044297,GO:0044424,GO:0044444,GO:0044464,GO:0045177,GO:0046394,GO:0046416,GO:0046437,GO:0046872,GO:0046983,GO:0047661,GO:0048037,GO:0048513,GO:0048731,GO:0048856,GO:0050662,GO:0050896,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051704,GO:0051707,GO:0060322,GO:0060359,GO:0065003,GO:0070178,GO:0070179,GO:0070279,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072347,GO:0097159,GO:0097367,GO:0097458,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901700
Evalue3.42e-97
EggNOG OGsCOG1171@1|root,KOG1251@2759|Eukaryota,38E04@33154|Opisthokonta,3BJ90@33208|Metazoa,3CVU5@33213|Bilateria,48AWK@7711|Chordata
EC4.3.1.19,5.1.1.18
DescriptionD-serine biosynthetic process
COG categoryET
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9520Ggra9520Gracilaria gracilis GNS1m malegenetig00000873_pilon 428538..429548 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9520.t1.start1Ggra9520.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 428538..428540 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9520.t1.CDS1Ggra9520.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 428538..429548 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9520.t1.exon1Ggra9520.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 428538..429548 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9520.t1.stop1Ggra9520.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 429546..429548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9520.t1Ggra9520.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 428538..429548 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9520.t1 ID=Ggra9520.t1|Name=Ggra9520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=337bp
MTTKSAHRDLIDEASTEVSFSDIKQAEKTIKGRAHLTPVLTSTRMDQFLS
AGETQLFFKCENFQKTGSFKFRGAYNAVSLLQQGANKGFPVVTHSSGNHA
QALSAAAALHNVNAHVVMPNNAPQVKVQAVKGYGGEVTFCKPNTKERVKT
AEQVRKDVGGILVHPFENPTVVAGQGTVGLELMHQVHNLDAVIVPIGGGG
LISGISIALKSIDPSIVVIGAEPELASGAFQSLQKKERVQVSGASETVAD
GLKSGIGNLGWEVVSRLVDRIITVSEEDILQSTKMIWQFMKTLIEPSSGV
GVAAACSKEFKNLGFKRVGVILCGGNVSLDHLPWQA*
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spliced messenger RNA

>Ggra9520.t1 ID=Ggra9520.t1|Name=Ggra9520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000873_pilon:428538..429548+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAACAAAAAGCGCCCACCGCGATCTCATCGACGAAGCATCAACTGA
GGTGTCTTTCTCGGACATTAAGCAAGCGGAAAAGACCATAAAAGGCCGCG
CGCATCTCACCCCCGTGCTCACCAGTACTCGTATGGATCAGTTCTTGTCG
GCAGGAGAAACTCAATTATTCTTCAAGTGCGAGAACTTTCAAAAGACAGG
CTCATTCAAGTTTCGCGGGGCGTACAATGCAGTCTCCTTGCTTCAGCAAG
GTGCCAACAAGGGCTTTCCGGTTGTTACACATTCGTCGGGAAACCATGCT
CAAGCGCTTTCGGCTGCCGCAGCTTTGCATAATGTCAATGCCCATGTTGT
CATGCCCAATAATGCGCCTCAAGTAAAGGTTCAAGCCGTGAAGGGCTACG
GTGGCGAAGTTACTTTCTGTAAGCCTAATACGAAAGAGAGAGTCAAAACA
GCTGAACAGGTGCGGAAGGACGTTGGGGGAATTCTAGTTCACCCATTTGA
GAATCCGACTGTGGTTGCTGGTCAGGGCACTGTTGGCCTTGAACTCATGC
ATCAGGTTCACAACCTTGATGCAGTCATTGTCCCGATTGGTGGGGGAGGA
CTCATATCAGGCATTTCAATCGCTCTGAAATCGATTGACCCAAGCATAGT
AGTTATCGGCGCCGAACCGGAGCTTGCAAGTGGAGCTTTTCAAAGCTTGC
AAAAGAAAGAACGAGTCCAAGTTTCTGGTGCTTCCGAAACGGTTGCAGAT
GGCTTGAAGTCAGGCATAGGGAATCTTGGATGGGAGGTTGTGTCCAGATT
AGTTGATAGGATCATCACGGTTTCTGAGGAAGATATTCTGCAGTCTACCA
AGATGATATGGCAATTCATGAAGACTCTGATCGAACCTAGTTCAGGCGTT
GGCGTTGCAGCTGCGTGCTCAAAGGAGTTTAAGAACCTGGGTTTTAAACG
TGTAGGAGTTATCCTTTGCGGGGGAAATGTGAGTCTCGATCATCTTCCAT
GGCAGGCATAG
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protein sequence of Ggra9520.t1

>Ggra9520.t1 ID=Ggra9520.t1|Name=Ggra9520.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=337bp
MTTKSAHRDLIDEASTEVSFSDIKQAEKTIKGRAHLTPVLTSTRMDQFLS
AGETQLFFKCENFQKTGSFKFRGAYNAVSLLQQGANKGFPVVTHSSGNHA
QALSAAAALHNVNAHVVMPNNAPQVKVQAVKGYGGEVTFCKPNTKERVKT
AEQVRKDVGGILVHPFENPTVVAGQGTVGLELMHQVHNLDAVIVPIGGGG
LISGISIALKSIDPSIVVIGAEPELASGAFQSLQKKERVQVSGASETVAD
GLKSGIGNLGWEVVSRLVDRIITVSEEDILQSTKMIWQFMKTLIEPSSGV
GVAAACSKEFKNLGFKRVGVILCGGNVSLDHLPWQA*
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mRNA from alignment at tig00000873_pilon:428538..429548+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9520.t1 ID=Ggra9520.t1|Name=Ggra9520.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1011bp|location=Sequence derived from alignment at tig00000873_pilon:428538..429548+ (Gracilaria gracilis GNS1m male)
ATGACAACAAAAAGCGCCCACCGCGATCTCATCGACGAAGCATCAACTGA
GGTGTCTTTCTCGGACATTAAGCAAGCGGAAAAGACCATAAAAGGCCGCG
CGCATCTCACCCCCGTGCTCACCAGTACTCGTATGGATCAGTTCTTGTCG
GCAGGAGAAACTCAATTATTCTTCAAGTGCGAGAACTTTCAAAAGACAGG
CTCATTCAAGTTTCGCGGGGCGTACAATGCAGTCTCCTTGCTTCAGCAAG
GTGCCAACAAGGGCTTTCCGGTTGTTACACATTCGTCGGGAAACCATGCT
CAAGCGCTTTCGGCTGCCGCAGCTTTGCATAATGTCAATGCCCATGTTGT
CATGCCCAATAATGCGCCTCAAGTAAAGGTTCAAGCCGTGAAGGGCTACG
GTGGCGAAGTTACTTTCTGTAAGCCTAATACGAAAGAGAGAGTCAAAACA
GCTGAACAGGTGCGGAAGGACGTTGGGGGAATTCTAGTTCACCCATTTGA
GAATCCGACTGTGGTTGCTGGTCAGGGCACTGTTGGCCTTGAACTCATGC
ATCAGGTTCACAACCTTGATGCAGTCATTGTCCCGATTGGTGGGGGAGGA
CTCATATCAGGCATTTCAATCGCTCTGAAATCGATTGACCCAAGCATAGT
AGTTATCGGCGCCGAACCGGAGCTTGCAAGTGGAGCTTTTCAAAGCTTGC
AAAAGAAAGAACGAGTCCAAGTTTCTGGTGCTTCCGAAACGGTTGCAGAT
GGCTTGAAGTCAGGCATAGGGAATCTTGGATGGGAGGTTGTGTCCAGATT
AGTTGATAGGATCATCACGGTTTCTGAGGAAGATATTCTGCAGTCTACCA
AGATGATATGGCAATTCATGAAGACTCTGATCGAACCTAGTTCAGGCGTT
GGCGTTGCAGCTGCGTGCTCAAAGGAGTTTAAGAACCTGGGTTTTAAACG
TGTAGGAGTTATCCTTTGCGGGGGAAATGTGAGTCTCGATCATCTTCCAT
GGCAGGCATAG
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Coding sequence (CDS) from alignment at tig00000873_pilon:428538..429548+

>Ggra9520.t1 ID=Ggra9520.t1|Name=Ggra9520.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1011bp|location=Sequence derived from alignment at tig00000873_pilon:428538..429548+ (Gracilaria gracilis GNS1m male)
ATGACAACAAAAAGCGCCCACCGCGATCTCATCGACGAAGCATCAACTGA
GGTGTCTTTCTCGGACATTAAGCAAGCGGAAAAGACCATAAAAGGCCGCG
CGCATCTCACCCCCGTGCTCACCAGTACTCGTATGGATCAGTTCTTGTCG
GCAGGAGAAACTCAATTATTCTTCAAGTGCGAGAACTTTCAAAAGACAGG
CTCATTCAAGTTTCGCGGGGCGTACAATGCAGTCTCCTTGCTTCAGCAAG
GTGCCAACAAGGGCTTTCCGGTTGTTACACATTCGTCGGGAAACCATGCT
CAAGCGCTTTCGGCTGCCGCAGCTTTGCATAATGTCAATGCCCATGTTGT
CATGCCCAATAATGCGCCTCAAGTAAAGGTTCAAGCCGTGAAGGGCTACG
GTGGCGAAGTTACTTTCTGTAAGCCTAATACGAAAGAGAGAGTCAAAACA
GCTGAACAGGTGCGGAAGGACGTTGGGGGAATTCTAGTTCACCCATTTGA
GAATCCGACTGTGGTTGCTGGTCAGGGCACTGTTGGCCTTGAACTCATGC
ATCAGGTTCACAACCTTGATGCAGTCATTGTCCCGATTGGTGGGGGAGGA
CTCATATCAGGCATTTCAATCGCTCTGAAATCGATTGACCCAAGCATAGT
AGTTATCGGCGCCGAACCGGAGCTTGCAAGTGGAGCTTTTCAAAGCTTGC
AAAAGAAAGAACGAGTCCAAGTTTCTGGTGCTTCCGAAACGGTTGCAGAT
GGCTTGAAGTCAGGCATAGGGAATCTTGGATGGGAGGTTGTGTCCAGATT
AGTTGATAGGATCATCACGGTTTCTGAGGAAGATATTCTGCAGTCTACCA
AGATGATATGGCAATTCATGAAGACTCTGATCGAACCTAGTTCAGGCGTT
GGCGTTGCAGCTGCGTGCTCAAAGGAGTTTAAGAACCTGGGTTTTAAACG
TGTAGGAGTTATCCTTTGCGGGGGAAATGTGAGTCTCGATCATCTTCCAT
GGCAGGCATAG
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