Ggra9531.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9531.t1
Unique NameGgra9531.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length430
Homology
BLAST of Ggra9531.t1 vs. uniprot
Match: R7Q6L5 (SSD domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6L5_CHOCR)

HSP 1 Score: 272 bits (695), Expect = 5.280e-79
Identity = 195/502 (38.84%), Postives = 249/502 (49.60%), Query Frame = 0
Query:   73 IDDMFLPVTLAFDDVNLKAGRDEKPLRLRTALALSGPGFGITVTSFSHVVVFLLSAISRLSPLRFFALWAAVGILFAWVSAINLFAACLALDAGRRGAKRRDCCPCFPPVAEVREFN-------------------------------CVVIGWLGACFYGMTQLYLKFWFSLFSPSGSAPREFQDQVD-----------------------------------------------------------GIE-DGSFIEPSIFTTHVKQFLSGG-GGLYSEDIILTKNTINICRFDVQYVYRERKNDEITALDSARSRLTL-----------------------EQYGALPDEIGLSLGRTSLALPLVCFVLEGHPVVAIVCAVVVGLIVIDVFGLTFFSGVNLKAVSVITLMLSTA---QWAPGVLRMVLPVSGH---------------------------LVLAGASSYIFQVILCGFLFLILMGSIHGLVLGSIVLSLV 429
            IDD F  VT A D+VN K     K ++ + ALALS  G  ITVTSF++VVVFLLSAIS+L  LRFF+LWAAVGI  AW  A+  + A +  D  R+ AKRRDCCPCFPPV EV+E N                                + +  L AC YG +QLYLKF F+ F PSGSA RE+QDQ+D                                                           G+E D + ++P  F   V +FL       YS  I+L    +  C+F VQY++ +  +DEI++L+S R                            EQY ALP EIG+SLG  SLA+ +VC VL GHP+VA++  VVVG+I+IDV GLT+FSG+NL +VSVITL+L T     +   + R  L   G                            +VL+GA SYIFQVI  GFLFLI+MG +HGL+L  I+LSLV
Sbjct:  393 IDDCF-HVTRAVDEVNQKESNHGKSVQQKIALALSQSGTAITVTSFTNVVVFLLSAISKLPALRFFSLWAAVGIFAAWGFAVTFYTALVTFDLRRQDAKRRDCCPCFPPVQEVKELNWFKKPAGGFSRFFGNTFGPLITRPIVRIVLLVLFVAGLAACSYGASQLYLKFEFAFFYPSGSAQREYQDQIDKYFKLGSPTNIYVRDRDLSTRENQLSLLELCKSDGVIAKNEWIQGDTLDCWYNAFRNENGVEGDDAVVDPQTFADRVARFLEDPLYSRYSSSILLKDEKVEGCKFSVQYIFLDTNDDEISSLESVREAADSVGFGNAVDEAPAAFPYIFFDTFSEQYAALPGEIGISLGLASLAVAIVCLVLIGHPLVALISVVVVGIIIIDVLGLTYFSGINLSSVSVITLVLCTGIGVDFVVHIARSFLEQVGTRTERTIKALETMGPPVFYAGFSTFLAIIVLSGARSYIFQVIFKGFLFLIIMGFLHGLILCPILLSLV 893          
BLAST of Ggra9531.t1 vs. uniprot
Match: A0A2V3ILV7 (Niemann-Pick C1 protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILV7_9FLOR)

HSP 1 Score: 196 bits (499), Expect = 5.860e-55
Identity = 140/353 (39.66%), Postives = 169/353 (47.88%), Query Frame = 0
Query:  191 VVIGWLGACFYGMTQLYLKFWFSLFSPSGSAPREFQDQVD-----------------------------------------------------------GIEDGSFIEPSIFTTHVKQFLSGGGGLYSEDIILTKNTINI--CRFDVQYVYRERKNDEITALDSARSR-----------------------LTLEQYGALPDEIGLSLGRTSLALPLVCFVLEGHPVVAIVCAVVVGLIVIDVFGLTFFSGVNLKAVSVITLMLSTAQWAPGVLRMVLPVSGHL------------------------------VLAGASSYIFQVILCGFLFLILMGSIHGLVLGSIVLSLV 429
            ++ GWL AC YG++QLYLKF FS F PSGSA REFQDQVD                                                           G+E    +    F     +F+ G GG Y+EDI+ +K+   +  CRF  QYVYRE  +DEITAL S R                            EQY ALP EIGLSLG  S+A+  VCFVL GHP VA+VC +VVG+I+IDV GLTFFSGVNL +VSVITL+L T      V+ +      H+                              VLA A SYIFQVI  GFLFLILMG +HGLV G ++LSL+
Sbjct:   12 ILAGWLAACCYGVSQLYLKFRFSFFYPSGSAQREFQDQVDEYFKLGDRTKMYVRDVDLSSAANQRRLLELCASDGVVARNEWIQADAVDCWYEALRSSEGLEGDEVLSAERFAEAASEFVRGEGGRYAEDIVFSKDRSRVEGCRFAAQYVYRETNDDEITALRSVRESGDSVGFGNGADGYAAAFPYTFQDTFTEQYDALPGEIGLSLGLASVAVAFVCFVLVGHPTVALVCVLVVGVIIIDVLGLTFFSGVNLNSVSVITLVLCTGISVDFVVHIARAFLEHVGSRSERAIKALAAMGPPVFYAGFSTFLAIVVLAFAKSYIFQVIFKGFLFLILMGFVHGLVGGPLILSLI 364          
BLAST of Ggra9531.t1 vs. uniprot
Match: A0A7S1G6H7 (Hypothetical protein n=2 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6H7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.630e-8
Identity = 51/160 (31.87%), Postives = 73/160 (45.62%), Query Frame = 0
Query:  105 ALSGPGFGITVTSFSHVVVFLLSAISRLSPLRFFALWAAVGILFAWVSAINLFAACLALDAGRRGAKRRDCCPCFP----------PVAEV-----------REFNC---------------VVIG---WLGACFYGMTQLYLKFWFSLFSPSGSAPREF 225
            AL+  G  ITVTS ++   F++S+ + L  L  F +WAA+GI FA++  + LFA+ + LDA R+ A+R DC PC            P   V           R F                 V+IG   W G   YG +QL ++F    F P  S  +E+
Sbjct:  408 ALAHAGASITVTSLTNFAAFVISSFTVLPALSSFCIWAAIGIAFAFIYTVTLFASFVVLDARRQSAQRADCLPCIKREAVKVDGDNPTGNVGCCGRKDGEVMRSFIANKYAPFLMTTPVRVAVLIGFAAWAGVSVYGFSQLTIEFRREWFLPGDSFLQEY 567          
BLAST of Ggra9531.t1 vs. uniprot
Match: patched domain-containing protein 3-like n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFFAEE (patched domain-containing protein 3-like n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFFAEE)

HSP 1 Score: 59.3 bits (142), Expect = 9.910e-6
Identity = 42/121 (34.71%), Postives = 65/121 (53.72%), Query Frame = 0
Query:   73 IDDMFLPVTLAFDDVNLKAGRDEKPLRLRTALALSGPGFGITVTSFSHVVVFLLSAISRLSPLRFFALWAAVGILFAWVSAINLFAACLALDAGRRGAKRRDCCPCFP--PVAEVREFNCV 191
            +DDMFL V+ A+ D N      + P RL     L+G   GIT+TS + +V FL+   S    ++ F L+    I+F++++ +   A CLA+  G R    R C  C P  PV E++E +C+
Sbjct:  338 VDDMFLMVS-AWADTNQYGDDWDIPKRLGHTFRLAG--VGITITSLTDLVAFLVGYSSVFLSVKNFCLYTGTAIIFSYIAQVTFLAGCLAVH-GHRVENSRHCVTCQPVLPVEELKEKSCM 454          
The following BLAST results are available for this feature:
BLAST of Ggra9531.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
R7Q6L55.280e-7938.84SSD domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A2V3ILV75.860e-5539.66Niemann-Pick C1 protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S1G6H76.630e-831.88Hypothetical protein n=2 Tax=Bicosoecida sp. CB-20... [more]
patched domain-containing protein 3-like n=3 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EAFFAEE9.910e-634.71patched domain-containing protein 3-like n=3 Tax=H... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000731Sterol-sensing domainPFAMPF12349Sterol-sensingcoord: 96..179
e-value: 1.8E-13
score: 50.6
IPR000731Sterol-sensing domainPROSITEPS50156SSDcoord: 73..163
score: 14.319433
NoneNo IPR availablePANTHERPTHR10796PATCHED-RELATEDcoord: 73..372
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 427..429
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 138..163
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 375..395
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 402..426
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 103..126
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 356..374
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..102
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 333..355
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 164..332
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 396..401
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 127..137
NoneNo IPR availableSUPERFAMILY82866Multidrug efflux transporter AcrB transmembrane domaincoord: 94..163
NoneNo IPR availableTMHMMTMhelixcoord: 333..355
NoneNo IPR availableTMHMMTMhelixcoord: 104..126
NoneNo IPR availableTMHMMTMhelixcoord: 362..384
NoneNo IPR availableTMHMMTMhelixcoord: 141..163
NoneNo IPR availableTMHMMTMhelixcoord: 193..215
NoneNo IPR availableTMHMMTMhelixcoord: 399..421

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:699098..705053 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9531.t1Ggra9531.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 699098..705053 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9531.t1 ID=Ggra9531.t1|Name=Ggra9531.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=430bp
MQPSSTPSQEDYLRKMQVQQKQQAQMNAFYYNVIVAFSKPKDDFKKHDHA
FLYEALLYKFDKNDFDEYISSYIDDMFLPVTLAFDDVNLKAGRDEKPLRL
RTALALSGPGFGITVTSFSHVVVFLLSAISRLSPLRFFALWAAVGILFAW
VSAINLFAACLALDAGRRGAKRRDCCPCFPPVAEVREFNCVVIGWLGACF
YGMTQLYLKFWFSLFSPSGSAPREFQDQVDGIEDGSFIEPSIFTTHVKQF
LSGGGGLYSEDIILTKNTINICRFDVQYVYRERKNDEITALDSARSRLTL
EQYGALPDEIGLSLGRTSLALPLVCFVLEGHPVVAIVCAVVVGLIVIDVF
GLTFFSGVNLKAVSVITLMLSTAQWAPGVLRMVLPVSGHLVLAGASSYIF
QVILCGFLFLILMGSIHGLVLGSIVLSLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000731SSD