Ggra9511.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9511.t1
Unique Name	Ggra9511.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	267

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:354831..355631 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9511	Ggra9511	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 354831..355631 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9511.t1.start1	Ggra9511.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 354831..354833 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9511.t1.CDS1	Ggra9511.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 354831..355631 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9511.t1.exon1	Ggra9511.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 354831..355631 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9511.t1.stop1	Ggra9511.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 355629..355631 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9511.t1	Ggra9511.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 354831..355631 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:354831..355631+
coding sequence from alignment at tig00000873_pilon:354831..355631+

mRNA sequence

>Ggra9511.t1 ID=Ggra9511.t1|Name=Ggra9511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=267bp
MSRKFRCYAIVSALPETALNAIRIAADEVTVLPKDRRRMLRDVCEMFRRE
VDQYRSGRWMRSEEISAIPTPLWSSVVLDMASNKQLAAWKVSAAARNVRI
TQSFPVGNAIETLPARELDCYAQLSSQSTFLIANILEGSASWTGVLHALG
ICMSYQSTERIGKKLVAEREQSESGAFENIDTSKNVVSVQIDNFDIMPFN
SVKASGERIPLISGTATQSIVRPKKAEHTLYPNGKTQTQGSASRWLSKEE
VQCLSNREAFVKINTL*

spliced messenger RNA

>Ggra9511.t1 ID=Ggra9511.t1|Name=Ggra9511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000873_pilon:354831..355631+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGAAAGTTTCGATGCTACGCAATTGTATCTGCTCTACCTGAAAC
TGCTCTAAATGCTATCCGGATTGCTGCTGATGAGGTTACAGTGCTTCCGA
AGGACAGGAGACGAATGTTGCGTGATGTCTGTGAAATGTTTCGTCGTGAG
GTAGACCAATATCGTTCTGGACGGTGGATGCGTTCTGAAGAAATATCAGC
AATACCAACGCCATTGTGGTCTTCGGTTGTGCTCGATATGGCCTCAAACA
AGCAACTTGCGGCTTGGAAAGTAAGTGCTGCGGCACGTAACGTGCGAATC
ACTCAATCATTTCCAGTCGGCAACGCAATTGAAACGCTTCCAGCACGGGA
ACTGGATTGCTACGCGCAACTGTCATCTCAGTCAACGTTTTTGATAGCAA
ACATTCTCGAAGGCTCCGCGTCGTGGACGGGCGTGCTGCATGCTCTAGGA
ATTTGTATGTCGTACCAGAGCACAGAACGAATTGGGAAGAAACTTGTGGC
AGAACGCGAGCAATCGGAGAGTGGGGCGTTTGAGAACATTGATACTTCTA
AGAATGTGGTTAGTGTTCAAATTGACAACTTTGACATAATGCCTTTCAAC
AGTGTCAAGGCATCAGGGGAGCGCATCCCACTAATTAGCGGTACAGCAAC
TCAGTCAATCGTGAGACCAAAGAAAGCAGAACATACACTGTATCCAAACG
GTAAAACTCAAACACAAGGAAGCGCATCAAGATGGCTTTCGAAGGAAGAG
GTGCAATGTCTATCAAATCGTGAGGCGTTTGTAAAAATCAATACACTCTG
A

protein sequence of Ggra9511.t1

>Ggra9511.t1 ID=Ggra9511.t1|Name=Ggra9511.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=267bp
MSRKFRCYAIVSALPETALNAIRIAADEVTVLPKDRRRMLRDVCEMFRRE
VDQYRSGRWMRSEEISAIPTPLWSSVVLDMASNKQLAAWKVSAAARNVRI
TQSFPVGNAIETLPARELDCYAQLSSQSTFLIANILEGSASWTGVLHALG
ICMSYQSTERIGKKLVAEREQSESGAFENIDTSKNVVSVQIDNFDIMPFN
SVKASGERIPLISGTATQSIVRPKKAEHTLYPNGKTQTQGSASRWLSKEE
VQCLSNREAFVKINTL*

mRNA from alignment at tig00000873_pilon:354831..355631+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9511.t1 ID=Ggra9511.t1|Name=Ggra9511.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=801bp|location=Sequence derived from alignment at tig00000873_pilon:354831..355631+ (Gracilaria gracilis GNS1m male)
ATGTCTCGAAAGTTTCGATGCTACGCAATTGTATCTGCTCTACCTGAAAC
TGCTCTAAATGCTATCCGGATTGCTGCTGATGAGGTTACAGTGCTTCCGA
AGGACAGGAGACGAATGTTGCGTGATGTCTGTGAAATGTTTCGTCGTGAG
GTAGACCAATATCGTTCTGGACGGTGGATGCGTTCTGAAGAAATATCAGC
AATACCAACGCCATTGTGGTCTTCGGTTGTGCTCGATATGGCCTCAAACA
AGCAACTTGCGGCTTGGAAAGTAAGTGCTGCGGCACGTAACGTGCGAATC
ACTCAATCATTTCCAGTCGGCAACGCAATTGAAACGCTTCCAGCACGGGA
ACTGGATTGCTACGCGCAACTGTCATCTCAGTCAACGTTTTTGATAGCAA
ACATTCTCGAAGGCTCCGCGTCGTGGACGGGCGTGCTGCATGCTCTAGGA
ATTTGTATGTCGTACCAGAGCACAGAACGAATTGGGAAGAAACTTGTGGC
AGAACGCGAGCAATCGGAGAGTGGGGCGTTTGAGAACATTGATACTTCTA
AGAATGTGGTTAGTGTTCAAATTGACAACTTTGACATAATGCCTTTCAAC
AGTGTCAAGGCATCAGGGGAGCGCATCCCACTAATTAGCGGTACAGCAAC
TCAGTCAATCGTGAGACCAAAGAAAGCAGAACATACACTGTATCCAAACG
GTAAAACTCAAACACAAGGAAGCGCATCAAGATGGCTTTCGAAGGAAGAG
GTGCAATGTCTATCAAATCGTGAGGCGTTTGTAAAAATCAATACACTCTG
A

Coding sequence (CDS) from alignment at tig00000873_pilon:354831..355631+

>Ggra9511.t1 ID=Ggra9511.t1|Name=Ggra9511.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=801bp|location=Sequence derived from alignment at tig00000873_pilon:354831..355631+ (Gracilaria gracilis GNS1m male)
ATGTCTCGAAAGTTTCGATGCTACGCAATTGTATCTGCTCTACCTGAAAC
TGCTCTAAATGCTATCCGGATTGCTGCTGATGAGGTTACAGTGCTTCCGA
AGGACAGGAGACGAATGTTGCGTGATGTCTGTGAAATGTTTCGTCGTGAG
GTAGACCAATATCGTTCTGGACGGTGGATGCGTTCTGAAGAAATATCAGC
AATACCAACGCCATTGTGGTCTTCGGTTGTGCTCGATATGGCCTCAAACA
AGCAACTTGCGGCTTGGAAAGTAAGTGCTGCGGCACGTAACGTGCGAATC
ACTCAATCATTTCCAGTCGGCAACGCAATTGAAACGCTTCCAGCACGGGA
ACTGGATTGCTACGCGCAACTGTCATCTCAGTCAACGTTTTTGATAGCAA
ACATTCTCGAAGGCTCCGCGTCGTGGACGGGCGTGCTGCATGCTCTAGGA
ATTTGTATGTCGTACCAGAGCACAGAACGAATTGGGAAGAAACTTGTGGC
AGAACGCGAGCAATCGGAGAGTGGGGCGTTTGAGAACATTGATACTTCTA
AGAATGTGGTTAGTGTTCAAATTGACAACTTTGACATAATGCCTTTCAAC
AGTGTCAAGGCATCAGGGGAGCGCATCCCACTAATTAGCGGTACAGCAAC
TCAGTCAATCGTGAGACCAAAGAAAGCAGAACATACACTGTATCCAAACG
GTAAAACTCAAACACAAGGAAGCGCATCAAGATGGCTTTCGAAGGAAGAG
GTGCAATGTCTATCAAATCGTGAGGCGTTTGTAAAAATCAATACACTCTG
A