Ggra9505.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9505.t1
Unique NameGgra9505.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length488
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:334133..335596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FH29
PFAMsFAD_binding_3,NAD_binding_8
Max annot lvl2759|Eukaryota
Evalue4.66e-67
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
DescriptionFAD binding
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9505Ggra9505Gracilaria gracilis GNS1m malegenetig00000873_pilon 334133..335596 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9505.t1.stop1Ggra9505.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 334133..334135 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9505.t1.CDS1Ggra9505.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 334133..335596 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9505.t1.exon1Ggra9505.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 334133..335596 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9505.t1.start1Ggra9505.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 335594..335596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9505.t1Ggra9505.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 334133..335596 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9505.t1 ID=Ggra9505.t1|Name=Ggra9505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=488bp
MAATQRDAAKPRDAAKPRDAAEPPYVDVTVVGAGVAGLTAAAALLQQQLS
VRVLERRADAQHAGSGADVALWPGAISLLRVLRVPDAFFDRHCFPVSTVH
MCNMHFEAAEHADADADADADADAAVKPPAATVLNTVDMDAVTHGTGERF
VLVARHRLMAALRALVPPHLIEYGARDVCVLEREHAQHLAHTTYVAADGC
TRRVRSRVVVGADGAHSTLRRRAVHPHGRHAARFCGEVCYRGVLPLAQLP
RVARERAHALLAHARERHGEMRICYGAGLRSSYGYMSGDGSLAYWWVKVV
CATPPRSDAKLARCEWPEPLRTLHDLTPPDCFYMHRIEESDELPKWSSAR
VVLVGDAAHTLSPNMGQGACLGVEDAAMVATLLRRFWAEADGHLEAFYQY
EFARRPFVHAIRTETRRQLWLGQLVWPPAVALRDALLRLLPARVLQNKLR
HSMFDVAPICEQLRAAAAAAAAASTTDGNATVGSSST*
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spliced messenger RNA

>Ggra9505.t1 ID=Ggra9505.t1|Name=Ggra9505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000873_pilon:334133..335596- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGCTACTCAGCGCGACGCCGCCAAGCCGCGCGACGCCGCCAAGCC
GCGCGACGCCGCCGAGCCGCCGTACGTGGACGTCACCGTCGTGGGCGCCG
GCGTGGCCGGGCTCACCGCCGCCGCCGCGCTGCTGCAGCAGCAGCTGAGC
GTGCGCGTGCTGGAGCGCCGCGCCGACGCGCAGCACGCGGGCAGCGGCGC
GGACGTGGCGCTATGGCCGGGCGCCATCTCGCTGCTGCGCGTGCTGCGCG
TGCCCGACGCCTTCTTCGACCGCCACTGCTTCCCCGTCTCCACCGTGCAC
ATGTGCAACATGCACTTTGAAGCCGCCGAACACGCCGACGCCGACGCCGA
CGCCGACGCCGACGCCGACGCCGCCGTCAAGCCACCCGCCGCCACCGTGC
TCAACACCGTCGACATGGACGCCGTCACGCACGGCACGGGCGAGCGCTTC
GTGCTGGTAGCGCGCCACCGGCTCATGGCCGCGCTGCGCGCGCTGGTGCC
GCCGCATCTCATCGAGTACGGCGCGCGCGACGTGTGCGTGCTCGAGCGCG
AGCACGCGCAGCATCTGGCGCACACGACGTACGTGGCGGCGGACGGCTGC
ACGCGGCGCGTGCGCTCGCGCGTGGTGGTGGGCGCGGACGGCGCGCACTC
CACGCTGCGCCGGCGCGCGGTGCACCCGCACGGCCGCCACGCGGCGCGCT
TCTGCGGCGAGGTGTGCTACCGCGGCGTGCTGCCGCTGGCGCAGCTGCCG
CGCGTGGCGCGCGAGCGCGCGCACGCGTTGCTGGCGCACGCGCGCGAGCG
CCACGGCGAGATGCGCATCTGCTACGGCGCGGGGCTACGCTCGTCGTACG
GCTACATGAGCGGCGACGGCTCGCTGGCGTACTGGTGGGTCAAGGTGGTA
TGCGCCACGCCGCCGCGCAGCGACGCCAAGCTGGCGCGCTGCGAGTGGCC
CGAGCCGCTGCGCACGCTGCACGACCTCACGCCGCCCGACTGCTTCTACA
TGCACCGCATCGAGGAGAGCGACGAGCTGCCCAAGTGGAGCTCCGCGCGC
GTGGTGCTGGTGGGCGACGCGGCGCACACGCTGTCGCCCAACATGGGGCA
GGGCGCGTGTCTGGGCGTGGAGGACGCCGCCATGGTGGCGACGTTGCTGC
GCCGCTTCTGGGCGGAGGCGGACGGCCACCTGGAGGCGTTCTACCAGTAC
GAGTTTGCGCGCCGCCCGTTCGTGCACGCGATACGCACTGAGACGCGGCG
CCAGCTGTGGCTCGGGCAGCTGGTGTGGCCGCCGGCCGTGGCGCTGCGCG
ACGCGCTGCTGCGGCTGCTACCGGCGCGCGTGCTGCAGAACAAGCTACGC
CACAGCATGTTCGACGTGGCGCCGATCTGCGAACAGCTACGCGCCGCCGC
CGCCGCCGCCGCCGCCGCATCGACTACGGATGGTAACGCTACGGTTGGTA
GTAGTAGTACGTAA
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protein sequence of Ggra9505.t1

>Ggra9505.t1 ID=Ggra9505.t1|Name=Ggra9505.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=488bp
MAATQRDAAKPRDAAKPRDAAEPPYVDVTVVGAGVAGLTAAAALLQQQLS
VRVLERRADAQHAGSGADVALWPGAISLLRVLRVPDAFFDRHCFPVSTVH
MCNMHFEAAEHADADADADADADAAVKPPAATVLNTVDMDAVTHGTGERF
VLVARHRLMAALRALVPPHLIEYGARDVCVLEREHAQHLAHTTYVAADGC
TRRVRSRVVVGADGAHSTLRRRAVHPHGRHAARFCGEVCYRGVLPLAQLP
RVARERAHALLAHARERHGEMRICYGAGLRSSYGYMSGDGSLAYWWVKVV
CATPPRSDAKLARCEWPEPLRTLHDLTPPDCFYMHRIEESDELPKWSSAR
VVLVGDAAHTLSPNMGQGACLGVEDAAMVATLLRRFWAEADGHLEAFYQY
EFARRPFVHAIRTETRRQLWLGQLVWPPAVALRDALLRLLPARVLQNKLR
HSMFDVAPICEQLRAAAAAAAAASTTDGNATVGSSST*
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mRNA from alignment at tig00000873_pilon:334133..335596-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9505.t1 ID=Ggra9505.t1|Name=Ggra9505.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1464bp|location=Sequence derived from alignment at tig00000873_pilon:334133..335596- (Gracilaria gracilis GNS1m male)
ATGGCAGCTACTCAGCGCGACGCCGCCAAGCCGCGCGACGCCGCCAAGCC
GCGCGACGCCGCCGAGCCGCCGTACGTGGACGTCACCGTCGTGGGCGCCG
GCGTGGCCGGGCTCACCGCCGCCGCCGCGCTGCTGCAGCAGCAGCTGAGC
GTGCGCGTGCTGGAGCGCCGCGCCGACGCGCAGCACGCGGGCAGCGGCGC
GGACGTGGCGCTATGGCCGGGCGCCATCTCGCTGCTGCGCGTGCTGCGCG
TGCCCGACGCCTTCTTCGACCGCCACTGCTTCCCCGTCTCCACCGTGCAC
ATGTGCAACATGCACTTTGAAGCCGCCGAACACGCCGACGCCGACGCCGA
CGCCGACGCCGACGCCGACGCCGCCGTCAAGCCACCCGCCGCCACCGTGC
TCAACACCGTCGACATGGACGCCGTCACGCACGGCACGGGCGAGCGCTTC
GTGCTGGTAGCGCGCCACCGGCTCATGGCCGCGCTGCGCGCGCTGGTGCC
GCCGCATCTCATCGAGTACGGCGCGCGCGACGTGTGCGTGCTCGAGCGCG
AGCACGCGCAGCATCTGGCGCACACGACGTACGTGGCGGCGGACGGCTGC
ACGCGGCGCGTGCGCTCGCGCGTGGTGGTGGGCGCGGACGGCGCGCACTC
CACGCTGCGCCGGCGCGCGGTGCACCCGCACGGCCGCCACGCGGCGCGCT
TCTGCGGCGAGGTGTGCTACCGCGGCGTGCTGCCGCTGGCGCAGCTGCCG
CGCGTGGCGCGCGAGCGCGCGCACGCGTTGCTGGCGCACGCGCGCGAGCG
CCACGGCGAGATGCGCATCTGCTACGGCGCGGGGCTACGCTCGTCGTACG
GCTACATGAGCGGCGACGGCTCGCTGGCGTACTGGTGGGTCAAGGTGGTA
TGCGCCACGCCGCCGCGCAGCGACGCCAAGCTGGCGCGCTGCGAGTGGCC
CGAGCCGCTGCGCACGCTGCACGACCTCACGCCGCCCGACTGCTTCTACA
TGCACCGCATCGAGGAGAGCGACGAGCTGCCCAAGTGGAGCTCCGCGCGC
GTGGTGCTGGTGGGCGACGCGGCGCACACGCTGTCGCCCAACATGGGGCA
GGGCGCGTGTCTGGGCGTGGAGGACGCCGCCATGGTGGCGACGTTGCTGC
GCCGCTTCTGGGCGGAGGCGGACGGCCACCTGGAGGCGTTCTACCAGTAC
GAGTTTGCGCGCCGCCCGTTCGTGCACGCGATACGCACTGAGACGCGGCG
CCAGCTGTGGCTCGGGCAGCTGGTGTGGCCGCCGGCCGTGGCGCTGCGCG
ACGCGCTGCTGCGGCTGCTACCGGCGCGCGTGCTGCAGAACAAGCTACGC
CACAGCATGTTCGACGTGGCGCCGATCTGCGAACAGCTACGCGCCGCCGC
CGCCGCCGCCGCCGCCGCATCGACTACGGATGGTAACGCTACGGTTGGTA
GTAGTAGTACGTAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:334133..335596-

>Ggra9505.t1 ID=Ggra9505.t1|Name=Ggra9505.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1464bp|location=Sequence derived from alignment at tig00000873_pilon:334133..335596- (Gracilaria gracilis GNS1m male)
ATGGCAGCTACTCAGCGCGACGCCGCCAAGCCGCGCGACGCCGCCAAGCC
GCGCGACGCCGCCGAGCCGCCGTACGTGGACGTCACCGTCGTGGGCGCCG
GCGTGGCCGGGCTCACCGCCGCCGCCGCGCTGCTGCAGCAGCAGCTGAGC
GTGCGCGTGCTGGAGCGCCGCGCCGACGCGCAGCACGCGGGCAGCGGCGC
GGACGTGGCGCTATGGCCGGGCGCCATCTCGCTGCTGCGCGTGCTGCGCG
TGCCCGACGCCTTCTTCGACCGCCACTGCTTCCCCGTCTCCACCGTGCAC
ATGTGCAACATGCACTTTGAAGCCGCCGAACACGCCGACGCCGACGCCGA
CGCCGACGCCGACGCCGACGCCGCCGTCAAGCCACCCGCCGCCACCGTGC
TCAACACCGTCGACATGGACGCCGTCACGCACGGCACGGGCGAGCGCTTC
GTGCTGGTAGCGCGCCACCGGCTCATGGCCGCGCTGCGCGCGCTGGTGCC
GCCGCATCTCATCGAGTACGGCGCGCGCGACGTGTGCGTGCTCGAGCGCG
AGCACGCGCAGCATCTGGCGCACACGACGTACGTGGCGGCGGACGGCTGC
ACGCGGCGCGTGCGCTCGCGCGTGGTGGTGGGCGCGGACGGCGCGCACTC
CACGCTGCGCCGGCGCGCGGTGCACCCGCACGGCCGCCACGCGGCGCGCT
TCTGCGGCGAGGTGTGCTACCGCGGCGTGCTGCCGCTGGCGCAGCTGCCG
CGCGTGGCGCGCGAGCGCGCGCACGCGTTGCTGGCGCACGCGCGCGAGCG
CCACGGCGAGATGCGCATCTGCTACGGCGCGGGGCTACGCTCGTCGTACG
GCTACATGAGCGGCGACGGCTCGCTGGCGTACTGGTGGGTCAAGGTGGTA
TGCGCCACGCCGCCGCGCAGCGACGCCAAGCTGGCGCGCTGCGAGTGGCC
CGAGCCGCTGCGCACGCTGCACGACCTCACGCCGCCCGACTGCTTCTACA
TGCACCGCATCGAGGAGAGCGACGAGCTGCCCAAGTGGAGCTCCGCGCGC
GTGGTGCTGGTGGGCGACGCGGCGCACACGCTGTCGCCCAACATGGGGCA
GGGCGCGTGTCTGGGCGTGGAGGACGCCGCCATGGTGGCGACGTTGCTGC
GCCGCTTCTGGGCGGAGGCGGACGGCCACCTGGAGGCGTTCTACCAGTAC
GAGTTTGCGCGCCGCCCGTTCGTGCACGCGATACGCACTGAGACGCGGCG
CCAGCTGTGGCTCGGGCAGCTGGTGTGGCCGCCGGCCGTGGCGCTGCGCG
ACGCGCTGCTGCGGCTGCTACCGGCGCGCGTGCTGCAGAACAAGCTACGC
CACAGCATGTTCGACGTGGCGCCGATCTGCGAACAGCTACGCGCCGCCGC
CGCCGCCGCCGCCGCCGCATCGACTACGGATGGTAACGCTACGGTTGGTA
GTAGTAGTACGTAA
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