Ggra9492.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9492.t1
Unique NameGgra9492.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Homology
BLAST of Ggra9492.t1 vs. uniprot
Match: A0A2V3ICZ7 (Apoptotic protease-activating factor 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICZ7_9FLOR)

HSP 1 Score: 238 bits (608), Expect = 2.120e-67
Identity = 138/258 (53.49%), Postives = 179/258 (69.38%), Query Frame = 0
Query:    1 MEVFGAIVNIAGLLDVFATRLSQLRVRFDRLHQQPEQFQLLLATYQLISHKVNHLHTSPSKSQISVDLSLVHKHLEAANSSLVRVSQRLDEPSTGSQSGSGSTSRRKRLSVCV--SKLKWRGKAVQATSRVEESLSAVNSHLNSAWQVLADIRFYQIKDELLARPRAEPDTFLPSIAVNPNPENLVFDFESKDKYQKPATCEAKLKHAVLRIDGAVGLSAVVGVIGGGGTGKTCAVRALAFLSEVQARFPGGIYEIPL 256
            ME FGAIVNIAGLLDV A RLS LRVR D+  QQP+Q++LL+A++  IS +V  L  SP    IS DLSL+H+HL  A   L  ++Q  DE    S S S  + RR+R  V +  S L   GKA+  T+R+EE+L +V + L+S+W++L+DI   QIK+++ A  R +PD F+P+IAV PNP+NLV DF  K+   K  TCEAKLKHAVL+ D  +  + V+GVIGGGGTGK+CAVRA+A LSEV  +FP GIYEI L
Sbjct:   56 MEPFGAIVNIAGLLDVIANRLSDLRVRLDKSRQQPKQYELLVASHARISDRVKLLAASPQDKPISGDLSLIHEHLGVAKYDLTYLTQHFDEVLVSSNSPSSPSRRRRRDRVAMFFSDLLATGKALHKTTRLEEALDSVQTQLDSSWRLLSDISLQQIKNQVSAITRTDPDGFVPNIAVRPNPDNLVLDFGLKNG--KAVTCEAKLKHAVLQRDNPLDRADVIGVIGGGGTGKSCAVRAVASLSEVHMKFPDGIYEILL 311          
BLAST of Ggra9492.t1 vs. uniprot
Match: A0A2V3IUE3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUE3_9FLOR)

HSP 1 Score: 189 bits (481), Expect = 7.510e-55
Identity = 113/267 (42.32%), Postives = 161/267 (60.30%), Query Frame = 0
Query:    7 IVNIAGLLDVFATRLSQLRVRFDRLHQQPEQFQLLLATYQLISHKVNHLHTSPSKS---QISVDLSLVHKHLEAANSSLVRVSQRLDEPSTGSQSGSGSTSRR-KRLSVCVSKLKWRGKAVQATSRVEESLSAVNSHLNSAWQVLADIRFYQIKDELLARPRAEPDTFLPSIAVNPNPENLVFDFESKDKYQKPATCEAKLKHAVLR--------IDGAVGLSAVVGVIGGGGTGKTCAVRALAFLSEVQARFPGGIYEIPLACGVG 261
            ++++ GL+DV  +RL+  R+R DR  Q P+Q+ +L+A +  I  K+ +LH S S++   +   D+ L   H+ +A+S L  +S+ L  PS G  S S   SRR KR++   SK   + +A+Q T+R EE+LS+V +HLN+AW+VL +IR  +I++ + A    E + F   + V PNPENLV DFES D+     TCE KLK A+++        IDG V      G IGGGG GK+CAVR L  L EV+  FPGGIYEI L    G
Sbjct:    2 VLDVIGLVDVVESRLADFRIRLDRFRQHPQQYAMLVAAHDRICEKLRYLHASLSETSNEETKRDMRLFQAHINSADSDLSSLSEYLSIPSNGLDSQSSGGSRRLKRIANAFSKASAKTRAIQRTTRNEETLSSVQNHLNNAWRVLNEIRLVRIEEGIKAITLGEREEFKGRVVVQPNPENLVLDFESMDENGAAVTCEGKLKQAIMQPGSSFVSVIDGIV-----TGAIGGGGMGKSCAVRGLTALQEVRDMFPGGIYEISLGLDAG 263          
BLAST of Ggra9492.t1 vs. uniprot
Match: A0A2V3ITH8 (NB-ARC domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITH8_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 3.370e-9
Identity = 48/120 (40.00%), Postives = 60/120 (50.00%), Query Frame = 0
Query:  149 DIRFYQIKDELLARPRAEPDTFLP---SIAVNPNPENLVFDFESKDKYQKPATCEAKLKHAVLR---------IDGAVGLSAVVGVIGGGGTGKTCAVRALAFLSEVQARFPGGIYEIPL 256
            DIR   +KD  + R       F     + AV   PE L  D++SKD+     T E +LK  +L+         +D  V  S V G +GGGG GKTCAVR LA   E+   F GGIYEI L
Sbjct:  150 DIRL-MLKDMKIRREHVSTQEFKAIAGADAVEATPEFLALDYDSKDREGNAVTIEGELKAKILQTRTNTCVGVLDAHVTDSKVTGAVGGGGVGKTCAVRGLAKDPEILKTFTGGIYEIAL 268          
The following BLAST results are available for this feature:
BLAST of Ggra9492.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3ICZ72.120e-6753.49Apoptotic protease-activating factor 1 n=1 Tax=Gra... [more]
A0A2V3IUE37.510e-5542.32Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ITH83.370e-940.00NB-ARC domain-containing protein n=1 Tax=Gracilari... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..315
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:175020..176213 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1Ggra9492.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 175020..176213 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9492.t1 ID=Ggra9492.t1|Name=Ggra9492.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MEVFGAIVNIAGLLDVFATRLSQLRVRFDRLHQQPEQFQLLLATYQLISH
KVNHLHTSPSKSQISVDLSLVHKHLEAANSSLVRVSQRLDEPSTGSQSGS
GSTSRRKRLSVCVSKLKWRGKAVQATSRVEESLSAVNSHLNSAWQVLADI
RFYQIKDELLARPRAEPDTFLPSIAVNPNPENLVFDFESKDKYQKPATCE
AKLKHAVLRIDGAVGLSAVVGVIGGGGTGKTCAVRALAFLSEVQARFPGG
IYEIPLACGVGSRKRPQGKGMKPLHQTHVVKRFRHGESTRSEDGFSVGQA
HADIVEKHMAQGPGS*
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