Ggra9492.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9492.t1
Unique NameGgra9492.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length316
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:175020..176213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9492Ggra9492Gracilaria gracilis GNS1m malegenetig00000873_pilon 175020..176213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1Ggra9492.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 175020..176213 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1.start1Ggra9492.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 175020..175022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1.CDS1Ggra9492.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 175020..175788 +
Ggra9492.t1.CDS2Ggra9492.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000873_pilon 176035..176213 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1.exon1Ggra9492.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 175020..175788 +
Ggra9492.t1.exon2Ggra9492.t1.exon2Gracilaria gracilis GNS1m maleexontig00000873_pilon 176035..176213 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1.intron1Ggra9492.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000873_pilon 175789..176034 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9492.t1.stop1Ggra9492.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 176211..176213 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9492.t1 ID=Ggra9492.t1|Name=Ggra9492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=316bp
MEVFGAIVNIAGLLDVFATRLSQLRVRFDRLHQQPEQFQLLLATYQLISH
KVNHLHTSPSKSQISVDLSLVHKHLEAANSSLVRVSQRLDEPSTGSQSGS
GSTSRRKRLSVCVSKLKWRGKAVQATSRVEESLSAVNSHLNSAWQVLADI
RFYQIKDELLARPRAEPDTFLPSIAVNPNPENLVFDFESKDKYQKPATCE
AKLKHAVLRIDGAVGLSAVVGVIGGGGTGKTCAVRALAFLSEVQARFPGG
IYEIPLACGVGSRKRPQGKGMKPLHQTHVVKRFRHGESTRSEDGFSVGQA
HADIVEKHMAQGPGS*
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spliced messenger RNA

>Ggra9492.t1 ID=Ggra9492.t1|Name=Ggra9492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=948bp|location=Sequence derived from alignment at tig00000873_pilon:175020..176213+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTCTTCGGTGCCATAGTAAACATCGCCGGCCTCCTCGATGTGTT
TGCCACGCGCCTCTCCCAGCTCCGCGTGCGGTTCGATAGGTTGCACCAAC
AACCAGAACAGTTCCAGCTCTTGCTGGCCACTTATCAGCTAATTTCCCAC
AAAGTCAACCACCTGCACACCTCACCTTCAAAGAGCCAAATATCCGTCGA
TTTGTCTTTGGTACACAAACACCTGGAAGCCGCCAATTCCAGTCTCGTCC
GCGTTAGTCAGCGCCTCGATGAGCCCAGCACCGGGAGCCAATCAGGTTCT
GGGAGTACTTCTCGCAGGAAGAGGCTCTCAGTATGTGTCTCCAAGCTGAA
GTGGAGAGGCAAAGCCGTTCAGGCAACCTCTCGCGTCGAGGAATCGCTTA
GTGCTGTAAATTCTCATCTTAACTCTGCTTGGCAAGTGCTGGCTGACATA
AGGTTTTATCAAATCAAAGATGAACTGCTTGCCAGACCCAGAGCTGAGCC
CGATACCTTCTTGCCCAGTATCGCCGTGAATCCGAACCCAGAGAATCTTG
TATTTGACTTTGAATCCAAAGACAAATATCAAAAACCTGCAACATGTGAG
GCCAAACTCAAGCATGCCGTGCTACGGATAGACGGCGCTGTTGGACTTAG
CGCCGTGGTTGGCGTGATCGGTGGGGGAGGAACGGGGAAGACCTGTGCCG
TACGTGCACTCGCCTTTCTTTCGGAAGTACAGGCTAGGTTTCCAGGTGGA
ATTTACGAGATCCCGTTGGCTTGCGGTGTTGGATCTCGCAAAAGGCCACA
GGGAAAAGGAATGAAGCCCTTGCATCAAACTCATGTTGTCAAACGTTTTC
GACACGGCGAAAGTACTCGTAGTGAAGATGGTTTCTCAGTTGGACAGGCA
CATGCGGACATTGTCGAGAAACACATGGCTCAGGGGCctggatcatag
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protein sequence of Ggra9492.t1

>Ggra9492.t1 ID=Ggra9492.t1|Name=Ggra9492.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=316bp
MEVFGAIVNIAGLLDVFATRLSQLRVRFDRLHQQPEQFQLLLATYQLISH
KVNHLHTSPSKSQISVDLSLVHKHLEAANSSLVRVSQRLDEPSTGSQSGS
GSTSRRKRLSVCVSKLKWRGKAVQATSRVEESLSAVNSHLNSAWQVLADI
RFYQIKDELLARPRAEPDTFLPSIAVNPNPENLVFDFESKDKYQKPATCE
AKLKHAVLRIDGAVGLSAVVGVIGGGGTGKTCAVRALAFLSEVQARFPGG
IYEIPLACGVGSRKRPQGKGMKPLHQTHVVKRFRHGESTRSEDGFSVGQA
HADIVEKHMAQGPGS*
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mRNA from alignment at tig00000873_pilon:175020..176213+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9492.t1 ID=Ggra9492.t1|Name=Ggra9492.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000873_pilon:175020..176213+ (Gracilaria gracilis GNS1m male)
ATGGAGGTCTTCGGTGCCATAGTAAACATCGCCGGCCTCCTCGATGTGTT
TGCCACGCGCCTCTCCCAGCTCCGCGTGCGGTTCGATAGGTTGCACCAAC
AACCAGAACAGTTCCAGCTCTTGCTGGCCACTTATCAGCTAATTTCCCAC
AAAGTCAACCACCTGCACACCTCACCTTCAAAGAGCCAAATATCCGTCGA
TTTGTCTTTGGTACACAAACACCTGGAAGCCGCCAATTCCAGTCTCGTCC
GCGTTAGTCAGCGCCTCGATGAGCCCAGCACCGGGAGCCAATCAGGTTCT
GGGAGTACTTCTCGCAGGAAGAGGCTCTCAGTATGTGTCTCCAAGCTGAA
GTGGAGAGGCAAAGCCGTTCAGGCAACCTCTCGCGTCGAGGAATCGCTTA
GTGCTGTAAATTCTCATCTTAACTCTGCTTGGCAAGTGCTGGCTGACATA
AGGTTTTATCAAATCAAAGATGAACTGCTTGCCAGACCCAGAGCTGAGCC
CGATACCTTCTTGCCCAGTATCGCCGTGAATCCGAACCCAGAGAATCTTG
TATTTGACTTTGAATCCAAAGACAAATATCAAAAACCTGCAACATGTGAG
GCCAAACTCAAGCATGCCGTGCTACGGATAGACGGCGCTGTTGGACTTAG
CGCCGTGGTTGGCGTGATCGGTGGGGGAGGAACGGGGAAGACCTGTGCCG
TACGTGCACTCGCCTTTCTTTCGGAAGTACAGGCTAGGTTTCCAGGTGGA
ATTTACGAGATCCCGTTGGGTATGGACGCCCAGGAATGGACGTTGAAGAA
CGGAATATCCAATTGCATAGAGAAGTCAGGAGGACTactgcaccacttga
ttttggatgtcgctgttcgcaaagcaaatgaaggaaatgagacagaagat
ttctttcaaagccttgtgaacaattacgtgctatcggacaagaggaatgc
gggagaTTTGGCACTGAAATGCGCAACGAGTCCTAGAGCGGTTTGTGCCG
AACCTGCCGTTGTAGCTTGCGGTGTTGGATCTCGCAAAAGGCCACAGGGA
AAAGGAATGAAGCCCTTGCATCAAACTCATGTTGTCAAACGTTTTCGACA
CGGCGAAAGTACTCGTAGTGAAGATGGTTTCTCAGTTGGACAGGCACATG
CGGACATTGTCGAGAAACACATGGCTCAGGGGCctggatcatag
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Coding sequence (CDS) from alignment at tig00000873_pilon:175020..176213+

>Ggra9492.t1 ID=Ggra9492.t1|Name=Ggra9492.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=948bp|location=Sequence derived from alignment at tig00000873_pilon:175020..176213+ (Gracilaria gracilis GNS1m male)
ATGGAGGTCTTCGGTGCCATAGTAAACATCGCCGGCCTCCTCGATGTGTT
TGCCACGCGCCTCTCCCAGCTCCGCGTGCGGTTCGATAGGTTGCACCAAC
AACCAGAACAGTTCCAGCTCTTGCTGGCCACTTATCAGCTAATTTCCCAC
AAAGTCAACCACCTGCACACCTCACCTTCAAAGAGCCAAATATCCGTCGA
TTTGTCTTTGGTACACAAACACCTGGAAGCCGCCAATTCCAGTCTCGTCC
GCGTTAGTCAGCGCCTCGATGAGCCCAGCACCGGGAGCCAATCAGGTTCT
GGGAGTACTTCTCGCAGGAAGAGGCTCTCAGTATGTGTCTCCAAGCTGAA
GTGGAGAGGCAAAGCCGTTCAGGCAACCTCTCGCGTCGAGGAATCGCTTA
GTGCTGTAAATTCTCATCTTAACTCTGCTTGGCAAGTGCTGGCTGACATA
AGGTTTTATCAAATCAAAGATGAACTGCTTGCCAGACCCAGAGCTGAGCC
CGATACCTTCTTGCCCAGTATCGCCGTGAATCCGAACCCAGAGAATCTTG
TATTTGACTTTGAATCCAAAGACAAATATCAAAAACCTGCAACATGTGAG
GCCAAACTCAAGCATGCCGTGCTACGGATAGACGGCGCTGTTGGACTTAG
CGCCGTGGTTGGCGTGATCGGTGGGGGAGGAACGGGGAAGACCTGTGCCG
TACGTGCACTCGCCTTTCTTTCGGAAGTACAGGCTAGGTTTCCAGGTGGA
ATTTACGAGATCCCGTTGGCTTGCGGTGTTGGATCTCGCAAAAGGCCACA
GGGAAAAGGAATGAAGCCCTTGCATCAAACTCATGTTGTCAAACGTTTTC
GACACGGCGAAAGTACTCGTAGTGAAGATGGTTTCTCAGTTGGACAGGCA
CATGCGGACATTGTCGAGAAACACATGGCTCAGGGGCctggatcatag
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