Ggra9524.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9524.t1
Unique Name	Ggra9524.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	352

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:440235..441290 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005708274.1
Max annot lvl	2759\|Eukaryota
KEGG rclass	RC00037,RC00039
KEGG ko	ko:K13699
KEGG Reaction	R09381
KEGG Pathway	ko04923,map04923
Evalue	9.81e-80
EggNOG OGs	COG0596@1\|root,KOG4409@2759\|Eukaryota
EC	2.3.1.51
Description	1-acylglycerol-3-phosphate O-acyltransferase activity
COG category	EH
BRITE	ko00000,ko00001,ko01000,ko01002,ko01004

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9524	Ggra9524	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 440235..441290 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9524.t1.start1	Ggra9524.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 440235..440237 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9524.t1.CDS1	Ggra9524.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 440235..441290 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9524.t1.exon1	Ggra9524.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 440235..441290 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9524.t1.stop1	Ggra9524.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 441288..441290 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9524.t1	Ggra9524.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 440235..441290 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:440235..441290+
coding sequence from alignment at tig00000873_pilon:440235..441290+

mRNA sequence

>Ggra9524.t1 ID=Ggra9524.t1|Name=Ggra9524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=352bp
MPLRLAVRLSLLLLRLASHATFFLEAQRLLLRLVRPIAPHHLHRAERQLL
STVHAPLRHLFVRDGHGHSIHVIHAAASSAASPRHVVLLHGHSMSAAFWY
RNFDHLVAAGCDVWAVDLLGWGRSARPSFRGHSALDAIHWFLRSLSTVLD
ALQLPTFTLVGHSLGAYLSVEYTKLHPKRVDHLVLVSPAAALRPVPMRRA
LYFWLPPQSIVRRGGLLGFLFFALNYPRHEMYVRDRLREYTYHLAVQTPP
SGETAVRPIIRFRGLTRAECARPIAEFLSVFSTPVRIVCGRLDSSICVDD
VFALFERMKRMGFSVEMDVVEQCDHCPFLEKPAEFSAIMDAVMKSTHPHA
F*

spliced messenger RNA

>Ggra9524.t1 ID=Ggra9524.t1|Name=Ggra9524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000873_pilon:440235..441290+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCACTGCGCCTCGCCGTGCGTCTGTCGTTGCTGCTGCTGCGTCTAGC
GTCGCACGCCACCTTCTTCCTGGAGGCGCAGCGGCTGTTGCTGCGTCTCG
TGCGCCCCATTGCCCCACACCACCTGCACCGCGCAGAGCGCCAGTTGCTT
TCCACCGTTCACGCCCCGTTGCGTCACCTCTTTGTGCGCGATGGCCATGG
CCATTCCATCCATGTTATTCAcgccgccgcgtcctccgccgcgtcgccgc
GACACGTCGTGTTGCTACACGGTCATTCCATGTCGGCCGCCTTTTGGTAC
CGCAACTTTGACCACCTCGTCGCCGCCGGCTGCGACGTGTGGGCCGTCGA
CCTACTCGGCTGGGGACGTAGTGCCAGACCTTCCTTCCGCGGACATTCCG
CCTTAGATGCCATACACTGGTTTCTGCGCTCCTTATCCACCGTGTTGGAT
GCGTTGCAACTGCCCACTTTCACTCTGGTCGGACATAGTCTGGGTGCCTA
TCTCTCCGTCGAGTACACCAAGCTCCACCCGAAGCGCGTCGATCACCTCG
TGTTGGTGTCGCCCGCCGCCGCGCTGCGCCCCGTGCCCATGCGCCGCGCG
CTGTACTTCTGGCTGCCGCCGCAGAGCATTGTGCGACGAGGAGGTTTGCT
CGGCTTTCTGTTCTTCGCGCTCAACTACCCCAGACACGAGATGTACGTGC
GAGATCGTCTGAGGGAGTACACGTACCATCTGGCTGTGCAGACGCCGCCC
AGCGGCGAGACTGCTGTGCGTCCCATTATTCGCTTTCGCGGCCTCACTCG
CGCCGAGTGTGCTCGCCCTATTGCTGAGTTCCTTAGCGTGTTTTCGACGC
CGGTGAGGATTGTGTGCGGTCGCTTGGATTCCTCCATTTGTGTTGATGAT
GTGTTTGCGTTGTTTGAACGCATGAAGCGCATGGGATTTAGCGTCGAGAT
GGATGTGGTGGAGCAATGTGATCATTGCCCGTTTTTAGAGAAGCCGGCAG
AGTTCTCGGCGATTATGGACGCCGTCATGAAGAGCACGCATCCCCACGCG
TTTTGA

protein sequence of Ggra9524.t1

>Ggra9524.t1 ID=Ggra9524.t1|Name=Ggra9524.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=352bp
MPLRLAVRLSLLLLRLASHATFFLEAQRLLLRLVRPIAPHHLHRAERQLL
STVHAPLRHLFVRDGHGHSIHVIHAAASSAASPRHVVLLHGHSMSAAFWY
RNFDHLVAAGCDVWAVDLLGWGRSARPSFRGHSALDAIHWFLRSLSTVLD
ALQLPTFTLVGHSLGAYLSVEYTKLHPKRVDHLVLVSPAAALRPVPMRRA
LYFWLPPQSIVRRGGLLGFLFFALNYPRHEMYVRDRLREYTYHLAVQTPP
SGETAVRPIIRFRGLTRAECARPIAEFLSVFSTPVRIVCGRLDSSICVDD
VFALFERMKRMGFSVEMDVVEQCDHCPFLEKPAEFSAIMDAVMKSTHPHA
F*

mRNA from alignment at tig00000873_pilon:440235..441290+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9524.t1 ID=Ggra9524.t1|Name=Ggra9524.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1056bp|location=Sequence derived from alignment at tig00000873_pilon:440235..441290+ (Gracilaria gracilis GNS1m male)
ATGCCACTGCGCCTCGCCGTGCGTCTGTCGTTGCTGCTGCTGCGTCTAGC
GTCGCACGCCACCTTCTTCCTGGAGGCGCAGCGGCTGTTGCTGCGTCTCG
TGCGCCCCATTGCCCCACACCACCTGCACCGCGCAGAGCGCCAGTTGCTT
TCCACCGTTCACGCCCCGTTGCGTCACCTCTTTGTGCGCGATGGCCATGG
CCATTCCATCCATGTTATTCAcgccgccgcgtcctccgccgcgtcgccgc
GACACGTCGTGTTGCTACACGGTCATTCCATGTCGGCCGCCTTTTGGTAC
CGCAACTTTGACCACCTCGTCGCCGCCGGCTGCGACGTGTGGGCCGTCGA
CCTACTCGGCTGGGGACGTAGTGCCAGACCTTCCTTCCGCGGACATTCCG
CCTTAGATGCCATACACTGGTTTCTGCGCTCCTTATCCACCGTGTTGGAT
GCGTTGCAACTGCCCACTTTCACTCTGGTCGGACATAGTCTGGGTGCCTA
TCTCTCCGTCGAGTACACCAAGCTCCACCCGAAGCGCGTCGATCACCTCG
TGTTGGTGTCGCCCGCCGCCGCGCTGCGCCCCGTGCCCATGCGCCGCGCG
CTGTACTTCTGGCTGCCGCCGCAGAGCATTGTGCGACGAGGAGGTTTGCT
CGGCTTTCTGTTCTTCGCGCTCAACTACCCCAGACACGAGATGTACGTGC
GAGATCGTCTGAGGGAGTACACGTACCATCTGGCTGTGCAGACGCCGCCC
AGCGGCGAGACTGCTGTGCGTCCCATTATTCGCTTTCGCGGCCTCACTCG
CGCCGAGTGTGCTCGCCCTATTGCTGAGTTCCTTAGCGTGTTTTCGACGC
CGGTGAGGATTGTGTGCGGTCGCTTGGATTCCTCCATTTGTGTTGATGAT
GTGTTTGCGTTGTTTGAACGCATGAAGCGCATGGGATTTAGCGTCGAGAT
GGATGTGGTGGAGCAATGTGATCATTGCCCGTTTTTAGAGAAGCCGGCAG
AGTTCTCGGCGATTATGGACGCCGTCATGAAGAGCACGCATCCCCACGCG
TTTTGA

Coding sequence (CDS) from alignment at tig00000873_pilon:440235..441290+

>Ggra9524.t1 ID=Ggra9524.t1|Name=Ggra9524.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1056bp|location=Sequence derived from alignment at tig00000873_pilon:440235..441290+ (Gracilaria gracilis GNS1m male)
ATGCCACTGCGCCTCGCCGTGCGTCTGTCGTTGCTGCTGCTGCGTCTAGC
GTCGCACGCCACCTTCTTCCTGGAGGCGCAGCGGCTGTTGCTGCGTCTCG
TGCGCCCCATTGCCCCACACCACCTGCACCGCGCAGAGCGCCAGTTGCTT
TCCACCGTTCACGCCCCGTTGCGTCACCTCTTTGTGCGCGATGGCCATGG
CCATTCCATCCATGTTATTCAcgccgccgcgtcctccgccgcgtcgccgc
GACACGTCGTGTTGCTACACGGTCATTCCATGTCGGCCGCCTTTTGGTAC
CGCAACTTTGACCACCTCGTCGCCGCCGGCTGCGACGTGTGGGCCGTCGA
CCTACTCGGCTGGGGACGTAGTGCCAGACCTTCCTTCCGCGGACATTCCG
CCTTAGATGCCATACACTGGTTTCTGCGCTCCTTATCCACCGTGTTGGAT
GCGTTGCAACTGCCCACTTTCACTCTGGTCGGACATAGTCTGGGTGCCTA
TCTCTCCGTCGAGTACACCAAGCTCCACCCGAAGCGCGTCGATCACCTCG
TGTTGGTGTCGCCCGCCGCCGCGCTGCGCCCCGTGCCCATGCGCCGCGCG
CTGTACTTCTGGCTGCCGCCGCAGAGCATTGTGCGACGAGGAGGTTTGCT
CGGCTTTCTGTTCTTCGCGCTCAACTACCCCAGACACGAGATGTACGTGC
GAGATCGTCTGAGGGAGTACACGTACCATCTGGCTGTGCAGACGCCGCCC
AGCGGCGAGACTGCTGTGCGTCCCATTATTCGCTTTCGCGGCCTCACTCG
CGCCGAGTGTGCTCGCCCTATTGCTGAGTTCCTTAGCGTGTTTTCGACGC
CGGTGAGGATTGTGTGCGGTCGCTTGGATTCCTCCATTTGTGTTGATGAT
GTGTTTGCGTTGTTTGAACGCATGAAGCGCATGGGATTTAGCGTCGAGAT
GGATGTGGTGGAGCAATGTGATCATTGCCCGTTTTTAGAGAAGCCGGCAG
AGTTCTCGGCGATTATGGACGCCGTCATGAAGAGCACGCATCCCCACGCG
TTTTGA