Ggra9506.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9506.t1
Unique NameGgra9506.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length362
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:335712..336797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FH29
PFAMsFAD_binding_3,NAD_binding_8
Max annot lvl2759|Eukaryota
Evalue5.15e-23
EggNOG OGsCOG0654@1|root,KOG2614@2759|Eukaryota
DescriptionFAD binding
COG categoryCH
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9506Ggra9506Gracilaria gracilis GNS1m malegenetig00000873_pilon 335712..336797 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9506.t1.stop1Ggra9506.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 335712..335714 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9506.t1.CDS1Ggra9506.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 335712..336797 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9506.t1.exon1Ggra9506.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 335712..336797 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9506.t1.start1Ggra9506.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 336795..336797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9506.t1Ggra9506.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 335712..336797 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9506.t1 ID=Ggra9506.t1|Name=Ggra9506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=362bp
MTFDKRAAYALACFRLLRTPMTTTSAVTHLCASLLTAHFSLPIFLRVWAF
VLLTQFATHYLGDYYDRRSDALNHQPSRFTGGSGQIAAGAIPAAHVLQLG
RLLAALSLLASQTLVPAAGRGLALLMVALAYSYSAPPLRLNHRALGELDA
ALITSVLLPLLSVLSQGAPWPAPALLLQLLAAPTLAKGALFVTLNAADRR
ADFAAGKRTLAVLLNAAGSARLVFRLHVCAYVAVWALAVLDARTAAAAGD
HDGGGGGGGGGGGGGGGVLRALRLAVLLSASAPLAARVCRTLASCPYRVH
GCLPAALAHASLLVWGVLIEALLRARVLDAPRVALLALLGWRSFGAHVPK
VYIHYLGRSNE*
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spliced messenger RNA

>Ggra9506.t1 ID=Ggra9506.t1|Name=Ggra9506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000873_pilon:335712..336797- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGTTTGACAAGCGAGCGGCGTACGCGCTGGCGTGCTTCCGGCTGCT
GCGCACGCCGATGACCACCACGTCCGCGGTGACGCATCTATGCGCGTCGC
TACTGACGGCGCACTTCTCGCTGCCAATCTTCCTGCGCGTGTGGGCGTTC
GTGCTGCTCACGCAGTTCGCCACGCACTACCTGGGCGACTACTACGACCG
CCGCTCGGACGCGCTCAACCACCAGCCGTCGCGCTTCACAGGCGGCAGTG
GCCAGATCGCGGCGGGCGCCATCCCCGCCGCGCACGTGCTGCAGCTCGGC
CGCCTGCTCGCGGCGCTGTCGCTGCTAGCCAGCCAGACGCTGGTGCCTGC
GGCGGGGCGCGGGCTAGCGCTGCTCATGGTGGCGCTGGCGTACAGCTACT
CTGCGCCGCCGCTGCGGCTCAACCACCGCGCGCTGGGCGAGCTGGACGCC
GCGCTCATCACGTCCGTGCTGCTGCCGCTGCTGTCCGTGCTGTCGCAGGG
CGCGCCGTGGCCCGCGCCCGCGCTGCTGCTGCAGCTGCTGGCCGCGCCCA
CGCTGGCAAAGGGCGCGCTGTTCGTCACGCTCAACGCCGCCGACCGCCGC
GCCGACTTTGCGGCCGGCAAGCGCACGCTCGCCGTGCTGCTCAACGCCGC
CGGCAGCGCGCGGCTGGTGTTTCGCCTGCACGTGTGCGCGTACGTGGCCG
TGTGGGCGCTGGCCGTGCTGGACGCGCGCACGGCCGCCGCCGCCGGCGAC
CACGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGG
CGTGCTGCGCGCGCTGCGGCTGGCCGTGCTGCTGTCGGCGTCGGCGCCGC
TGGCGGCGCGCGTGTGTCGCACGCTGGCGAGCTGCCCGTACCGCGTGCAC
GGCTGCTTGCCGGCGGCGCTTGCGCACGCTAGCCTGCTCGTGTGGGGCGT
GCTCATTGAGGCGCTGCTGCGCGCGCGAGTGCTGGACGCGCCGCGCGTCG
CGCTGCTCGCGCTGCTTGGCTGGCGCTCGTTTGGCGCGCATGTACCGAAG
GTATATATACATTACCTTGGTAGATCGAACGAATAA
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protein sequence of Ggra9506.t1

>Ggra9506.t1 ID=Ggra9506.t1|Name=Ggra9506.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=362bp
MTFDKRAAYALACFRLLRTPMTTTSAVTHLCASLLTAHFSLPIFLRVWAF
VLLTQFATHYLGDYYDRRSDALNHQPSRFTGGSGQIAAGAIPAAHVLQLG
RLLAALSLLASQTLVPAAGRGLALLMVALAYSYSAPPLRLNHRALGELDA
ALITSVLLPLLSVLSQGAPWPAPALLLQLLAAPTLAKGALFVTLNAADRR
ADFAAGKRTLAVLLNAAGSARLVFRLHVCAYVAVWALAVLDARTAAAAGD
HDGGGGGGGGGGGGGGGVLRALRLAVLLSASAPLAARVCRTLASCPYRVH
GCLPAALAHASLLVWGVLIEALLRARVLDAPRVALLALLGWRSFGAHVPK
VYIHYLGRSNE*
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mRNA from alignment at tig00000873_pilon:335712..336797-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9506.t1 ID=Ggra9506.t1|Name=Ggra9506.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1086bp|location=Sequence derived from alignment at tig00000873_pilon:335712..336797- (Gracilaria gracilis GNS1m male)
ATGACGTTTGACAAGCGAGCGGCGTACGCGCTGGCGTGCTTCCGGCTGCT
GCGCACGCCGATGACCACCACGTCCGCGGTGACGCATCTATGCGCGTCGC
TACTGACGGCGCACTTCTCGCTGCCAATCTTCCTGCGCGTGTGGGCGTTC
GTGCTGCTCACGCAGTTCGCCACGCACTACCTGGGCGACTACTACGACCG
CCGCTCGGACGCGCTCAACCACCAGCCGTCGCGCTTCACAGGCGGCAGTG
GCCAGATCGCGGCGGGCGCCATCCCCGCCGCGCACGTGCTGCAGCTCGGC
CGCCTGCTCGCGGCGCTGTCGCTGCTAGCCAGCCAGACGCTGGTGCCTGC
GGCGGGGCGCGGGCTAGCGCTGCTCATGGTGGCGCTGGCGTACAGCTACT
CTGCGCCGCCGCTGCGGCTCAACCACCGCGCGCTGGGCGAGCTGGACGCC
GCGCTCATCACGTCCGTGCTGCTGCCGCTGCTGTCCGTGCTGTCGCAGGG
CGCGCCGTGGCCCGCGCCCGCGCTGCTGCTGCAGCTGCTGGCCGCGCCCA
CGCTGGCAAAGGGCGCGCTGTTCGTCACGCTCAACGCCGCCGACCGCCGC
GCCGACTTTGCGGCCGGCAAGCGCACGCTCGCCGTGCTGCTCAACGCCGC
CGGCAGCGCGCGGCTGGTGTTTCGCCTGCACGTGTGCGCGTACGTGGCCG
TGTGGGCGCTGGCCGTGCTGGACGCGCGCACGGCCGCCGCCGCCGGCGAC
CACGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGG
CGTGCTGCGCGCGCTGCGGCTGGCCGTGCTGCTGTCGGCGTCGGCGCCGC
TGGCGGCGCGCGTGTGTCGCACGCTGGCGAGCTGCCCGTACCGCGTGCAC
GGCTGCTTGCCGGCGGCGCTTGCGCACGCTAGCCTGCTCGTGTGGGGCGT
GCTCATTGAGGCGCTGCTGCGCGCGCGAGTGCTGGACGCGCCGCGCGTCG
CGCTGCTCGCGCTGCTTGGCTGGCGCTCGTTTGGCGCGCATGTACCGAAG
GTATATATACATTACCTTGGTAGATCGAACGAATAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:335712..336797-

>Ggra9506.t1 ID=Ggra9506.t1|Name=Ggra9506.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1086bp|location=Sequence derived from alignment at tig00000873_pilon:335712..336797- (Gracilaria gracilis GNS1m male)
ATGACGTTTGACAAGCGAGCGGCGTACGCGCTGGCGTGCTTCCGGCTGCT
GCGCACGCCGATGACCACCACGTCCGCGGTGACGCATCTATGCGCGTCGC
TACTGACGGCGCACTTCTCGCTGCCAATCTTCCTGCGCGTGTGGGCGTTC
GTGCTGCTCACGCAGTTCGCCACGCACTACCTGGGCGACTACTACGACCG
CCGCTCGGACGCGCTCAACCACCAGCCGTCGCGCTTCACAGGCGGCAGTG
GCCAGATCGCGGCGGGCGCCATCCCCGCCGCGCACGTGCTGCAGCTCGGC
CGCCTGCTCGCGGCGCTGTCGCTGCTAGCCAGCCAGACGCTGGTGCCTGC
GGCGGGGCGCGGGCTAGCGCTGCTCATGGTGGCGCTGGCGTACAGCTACT
CTGCGCCGCCGCTGCGGCTCAACCACCGCGCGCTGGGCGAGCTGGACGCC
GCGCTCATCACGTCCGTGCTGCTGCCGCTGCTGTCCGTGCTGTCGCAGGG
CGCGCCGTGGCCCGCGCCCGCGCTGCTGCTGCAGCTGCTGGCCGCGCCCA
CGCTGGCAAAGGGCGCGCTGTTCGTCACGCTCAACGCCGCCGACCGCCGC
GCCGACTTTGCGGCCGGCAAGCGCACGCTCGCCGTGCTGCTCAACGCCGC
CGGCAGCGCGCGGCTGGTGTTTCGCCTGCACGTGTGCGCGTACGTGGCCG
TGTGGGCGCTGGCCGTGCTGGACGCGCGCACGGCCGCCGCCGCCGGCGAC
CACGACGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGG
CGTGCTGCGCGCGCTGCGGCTGGCCGTGCTGCTGTCGGCGTCGGCGCCGC
TGGCGGCGCGCGTGTGTCGCACGCTGGCGAGCTGCCCGTACCGCGTGCAC
GGCTGCTTGCCGGCGGCGCTTGCGCACGCTAGCCTGCTCGTGTGGGGCGT
GCTCATTGAGGCGCTGCTGCGCGCGCGAGTGCTGGACGCGCCGCGCGTCG
CGCTGCTCGCGCTGCTTGGCTGGCGCTCGTTTGGCGCGCATGTACCGAAG
GTATATATACATTACCTTGGTAGATCGAACGAATAA
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