Ggra9486.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9486.t1
Unique NameGgra9486.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:162757..163683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703297.1
PFAMsadh_short
Max annot lvl2759|Eukaryota
KEGG rclassRC00029,RC00103,RC00127,RC00261
KEGG koko:K10251
KEGG ReactionR02352,R02353,R04681,R04682,R07759,R08945,R08980,R10826
KEGG Pathwayko00062,ko00140,ko01040,ko01100,ko01110,ko01212,map00062,map00140,map01040,map01100,map01110,map01212
KEGG ModuleM00415
GOsGO:0000003,GO:0000038,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006629,GO:0006631,GO:0006633,GO:0007275,GO:0008150,GO:0008152,GO:0008610,GO:0009058,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0012505,GO:0016020,GO:0016053,GO:0016491,GO:0016614,GO:0016616,GO:0018454,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0032787,GO:0042761,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0045703,GO:0046394,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0055114,GO:0061458,GO:0071704,GO:0072330,GO:1901576
Evalue2.13e-70
EggNOG OGsCOG0300@1|root,2QRPU@2759|Eukaryota
EC1.1.1.330,1.1.1.62
Description3-oxo-behenoyl-CoA reductase activity
COG categoryS
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9486Ggra9486Gracilaria gracilis GNS1m malegenetig00000873_pilon 162757..163683 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9486.t1.stop1Ggra9486.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 162757..162759 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9486.t1.CDS1Ggra9486.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 162757..163683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9486.t1.exon1Ggra9486.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 162757..163683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9486.t1.start1Ggra9486.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 163681..163683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9486.t1Ggra9486.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 162757..163683 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9486.t1 ID=Ggra9486.t1|Name=Ggra9486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MQPIVLTLAAIGALTLLYAALRLGATLYQYCVYSFCYAPYKREWAVVTGA
SGDIGGAFVHALAKRGLNVLLIARSVQNMNAVASEAQQQYGVSTEVHAFD
FENASEHHWQTLRQLMSSKTPTVLINNVGISLEMPTELIDVPEQLMTRMV
NINIHSTNRITKMVLPHMLSVRKGIILCLASGGGAVTPAPMLTPYAGTKA
YNDAFAVSLNGELHAHNIHVHSLTPFFVAGSMAKMRRSLTVPSPSMFAEK
ALQQVALTPRLNPYWPHQLMGAAVRALPLAMQTRRVYALHRSIRARALRK
KARAAKQH*
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spliced messenger RNA

>Ggra9486.t1 ID=Ggra9486.t1|Name=Ggra9486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000873_pilon:162757..163683- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCGATCGTGTTGACGCTAGCCGCGATCGGCGCCCTCACGCTGCT
GTACGCCGCGCTGCGCCTGGGCGCCACGCTGTACCAGTACTGCGTGTACT
CCTTCTGCTACGCGCCGTACAAGCGCGAGTGGGCCGTGGTGACGGGCGCG
TCCGGCGACATTGGCGGCGCCTTTGTGCACGCGCTGGCCAAACGCGGCCT
CAACGTGCTGCTCATCGCGCGCTCCGTACAGAACATGAACGCCGTGGCGA
GCGAGGCGCAGCAGCAGTATGGCGTCAGCACCGAGGTGCACGCGTTCGAC
TTTGAGAACGCGTCGGAGCACCACTGGCAAACGCTCCGGCAGCTGATGAG
CAGCAAGACGCCCACCGTGCTGATCAACAACGTGGGCATCAGCCTGGAGA
TGCCCACGGAGCTCATCGACGTACCGGAGCAGCTCATGACGCGCATGGTG
AACATCAACATCCACTCCACCAACCGCATCACCAAGATGGTGCTGCCGCA
CATGCTCAGCGTGCGCAAGGGCATCATCCTGTGCCTGGCGTCGGGCGGCG
GCGCCGTAACGCCGGCGCCCATGCTCACGCCGTACGCCGGCACCAAGGCG
TACAACGACGCGTTCGCCGTCAGCCTCAACGGCGAGCTACACGCGCACAA
CATCCACGTACACTCGCTCACGCCCTTCTTCGTGGCGGGCTCCATGGCAA
AGATGCGCCGCTCGCTCACCGTGCCGTCGCCGAGCATGTTCGCCGAAAAG
GCGCTGCAGCAGGTGGCGCTCACGCCGCGCCTCAACCCCTACTGGCCGCA
CCAGCTCATGGGCGCCGCCGTGCGCGCGCTGCCGCTGGCCATGCAGACGC
GCCGCGTGTACGCGCTGCACCGCTCCATCCGCGCGCGCGCGCTGCGGAAG
AAGGCGCGCGCCGCTAAACAACACTAA
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protein sequence of Ggra9486.t1

>Ggra9486.t1 ID=Ggra9486.t1|Name=Ggra9486.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MQPIVLTLAAIGALTLLYAALRLGATLYQYCVYSFCYAPYKREWAVVTGA
SGDIGGAFVHALAKRGLNVLLIARSVQNMNAVASEAQQQYGVSTEVHAFD
FENASEHHWQTLRQLMSSKTPTVLINNVGISLEMPTELIDVPEQLMTRMV
NINIHSTNRITKMVLPHMLSVRKGIILCLASGGGAVTPAPMLTPYAGTKA
YNDAFAVSLNGELHAHNIHVHSLTPFFVAGSMAKMRRSLTVPSPSMFAEK
ALQQVALTPRLNPYWPHQLMGAAVRALPLAMQTRRVYALHRSIRARALRK
KARAAKQH*
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mRNA from alignment at tig00000873_pilon:162757..163683-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9486.t1 ID=Ggra9486.t1|Name=Ggra9486.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000873_pilon:162757..163683- (Gracilaria gracilis GNS1m male)
ATGCAGCCGATCGTGTTGACGCTAGCCGCGATCGGCGCCCTCACGCTGCT
GTACGCCGCGCTGCGCCTGGGCGCCACGCTGTACCAGTACTGCGTGTACT
CCTTCTGCTACGCGCCGTACAAGCGCGAGTGGGCCGTGGTGACGGGCGCG
TCCGGCGACATTGGCGGCGCCTTTGTGCACGCGCTGGCCAAACGCGGCCT
CAACGTGCTGCTCATCGCGCGCTCCGTACAGAACATGAACGCCGTGGCGA
GCGAGGCGCAGCAGCAGTATGGCGTCAGCACCGAGGTGCACGCGTTCGAC
TTTGAGAACGCGTCGGAGCACCACTGGCAAACGCTCCGGCAGCTGATGAG
CAGCAAGACGCCCACCGTGCTGATCAACAACGTGGGCATCAGCCTGGAGA
TGCCCACGGAGCTCATCGACGTACCGGAGCAGCTCATGACGCGCATGGTG
AACATCAACATCCACTCCACCAACCGCATCACCAAGATGGTGCTGCCGCA
CATGCTCAGCGTGCGCAAGGGCATCATCCTGTGCCTGGCGTCGGGCGGCG
GCGCCGTAACGCCGGCGCCCATGCTCACGCCGTACGCCGGCACCAAGGCG
TACAACGACGCGTTCGCCGTCAGCCTCAACGGCGAGCTACACGCGCACAA
CATCCACGTACACTCGCTCACGCCCTTCTTCGTGGCGGGCTCCATGGCAA
AGATGCGCCGCTCGCTCACCGTGCCGTCGCCGAGCATGTTCGCCGAAAAG
GCGCTGCAGCAGGTGGCGCTCACGCCGCGCCTCAACCCCTACTGGCCGCA
CCAGCTCATGGGCGCCGCCGTGCGCGCGCTGCCGCTGGCCATGCAGACGC
GCCGCGTGTACGCGCTGCACCGCTCCATCCGCGCGCGCGCGCTGCGGAAG
AAGGCGCGCGCCGCTAAACAACACTAA
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Coding sequence (CDS) from alignment at tig00000873_pilon:162757..163683-

>Ggra9486.t1 ID=Ggra9486.t1|Name=Ggra9486.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000873_pilon:162757..163683- (Gracilaria gracilis GNS1m male)
ATGCAGCCGATCGTGTTGACGCTAGCCGCGATCGGCGCCCTCACGCTGCT
GTACGCCGCGCTGCGCCTGGGCGCCACGCTGTACCAGTACTGCGTGTACT
CCTTCTGCTACGCGCCGTACAAGCGCGAGTGGGCCGTGGTGACGGGCGCG
TCCGGCGACATTGGCGGCGCCTTTGTGCACGCGCTGGCCAAACGCGGCCT
CAACGTGCTGCTCATCGCGCGCTCCGTACAGAACATGAACGCCGTGGCGA
GCGAGGCGCAGCAGCAGTATGGCGTCAGCACCGAGGTGCACGCGTTCGAC
TTTGAGAACGCGTCGGAGCACCACTGGCAAACGCTCCGGCAGCTGATGAG
CAGCAAGACGCCCACCGTGCTGATCAACAACGTGGGCATCAGCCTGGAGA
TGCCCACGGAGCTCATCGACGTACCGGAGCAGCTCATGACGCGCATGGTG
AACATCAACATCCACTCCACCAACCGCATCACCAAGATGGTGCTGCCGCA
CATGCTCAGCGTGCGCAAGGGCATCATCCTGTGCCTGGCGTCGGGCGGCG
GCGCCGTAACGCCGGCGCCCATGCTCACGCCGTACGCCGGCACCAAGGCG
TACAACGACGCGTTCGCCGTCAGCCTCAACGGCGAGCTACACGCGCACAA
CATCCACGTACACTCGCTCACGCCCTTCTTCGTGGCGGGCTCCATGGCAA
AGATGCGCCGCTCGCTCACCGTGCCGTCGCCGAGCATGTTCGCCGAAAAG
GCGCTGCAGCAGGTGGCGCTCACGCCGCGCCTCAACCCCTACTGGCCGCA
CCAGCTCATGGGCGCCGCCGTGCGCGCGCTGCCGCTGGCCATGCAGACGC
GCCGCGTGTACGCGCTGCACCGCTCCATCCGCGCGCGCGCGCTGCGGAAG
AAGGCGCGCGCCGCTAAACAACACTAA
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