Ggra9487.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra9487.t1
Unique Name	Ggra9487.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	719

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000873_pilon	contig	tig00000873_pilon:163852..166008 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra9487	Ggra9487	Gracilaria gracilis GNS1m male	gene	tig00000873_pilon 163852..166008 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9487.t1.start1	Ggra9487.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000873_pilon 163852..163854 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9487.t1.CDS1	Ggra9487.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000873_pilon 163852..166008 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9487.t1.exon1	Ggra9487.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000873_pilon 163852..166008 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9487.t1.stop1	Ggra9487.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000873_pilon 166006..166008 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra9487.t1	Ggra9487.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000873_pilon 163852..166008 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000873_pilon:163852..166008+
coding sequence from alignment at tig00000873_pilon:163852..166008+

mRNA sequence

>Ggra9487.t1 ID=Ggra9487.t1|Name=Ggra9487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=719bp
MNFIGRRRRSQRSSGGAIAIMEPAAAARFLSANNLLLALAASTPAIARTH
APFYPRLHQLIASAPPPHASLQRALSQLLVEPDAAAAAPYVRDGALPPAS
SPLPLARLLWLLLRRALSSPHALAQLVSLLELHTHAHAQLRVAYYQRHSR
VALFLRKAVVAFHSLSFESLMRLHDALRLQSEPPPPPHQLSTHARRLAAS
HPLPPPLFSQLQQHASRAAAAAAATAVEARSPLTMLTQLESARRADLSTA
LAATHRHFDTHAAQLPPHHAALALGILHARFSAGAHATAALRDALRAAQA
AADVGAQRAALQWLARVEPPCHAASLLRHARDAPALARLALLCDAPPRPR
ALASSLRASVDALLLAAAAWQLRAALPTALGVARSAVRRAQLQHAPPAEL
ARAAVALAELTAADGHAPRAERLLLRCMARVQAAAAAAAASTVAPELLSL
RRALTAVRFERAVAAAQLVRADTLRRRLHAFAAAAQAHALALSAPDVALD
ALRADARWLLARGHARAAAAAALALARRAAALGRAWRVADALRVRADALL
AGGDGAGALAHALHAASLAHALRLCAPRVRALLSAVRALLRLNARAAHAL
RLLRPLLPLALEGLGAAVRAQALLLYAHCVAKRAAERRQRPPEQAMALAQ
RALHAFRQLRHANGVRDCLYTLARLYHCTQQFALRNRMACLFRQHVRTIG
TPDAVQQTTNSLVDHDLV*

spliced messenger RNA

>Ggra9487.t1 ID=Ggra9487.t1|Name=Ggra9487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000873_pilon:163852..166008+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTTCATCGGCCGCCGTCGCCGATCTCAGAGGAGCAGCGGAGGCGC
CATCGCCATCATGGAGCCGGCCGCGGCGGCGCGCTTCCTCAGCGCGAACA
ACTTGCTGCTGGCGCTGGCGGCGTCCACGCCGGCCATCGCGCGCACGCAC
GCGCCCTTCTACCCGCGGCTGCACCAGCTGATCGCGTCGGCGCCGCCGCC
GCACGCGTCGCTGCAGCGCGCGCTATCGCAGCTGTTGGTGGAGCCCGACG
CCGCCGCCGCCGCGCCGTACGTGCGCGACGGCGCGCTGCCGCCTGCGTCG
TCGCCGCTGCCGCTGGCGCGGCTGCTGTGGCTGCTGCTGCGCCGCGCGCT
GTCGTCGCCGCACGCGCTGGCGCAGCTGGTCTCGCTGCTGGAGCTGCACA
CGCACGCGCACGCGCAGCTGCGCGTCGCCTACTACCAGCGCCACTCGCGC
GTGGCGCTGTTCCTGCGCAAGGCCGTGGTCGCCTTCCACTCGCTGTCGTT
CGAGTCGCTCATGCGCCTGCACGACGCGCTGCGCCTCCAAAGCGAGCCGC
CGCCGCCGCCGCACCAGCTCAGCACGCACGCGCGTCGCCTCGCCGCGTCG
CACCCGCTACCGCCGCCGCTCTTCTCGCAGCTGCAGCAGCACGCATCGCG
CGCCGCCGCCGCCGCCGCTGCCACCGCCGTCGAGGCGCGCTCGCCGCTCA
CCATGCTGACGCAGCTAGAGAGCGCGCGTCGCGCCGATCTATCCACCGCA
CTCGCCGCCACTCACCGCCACTTTGACACGCACGCCGCGCAGCTACCGCC
GCACCACGCCGCGCTGGCGCTAGGCATTCTGCACGCGCGCTTCTCCGCCG
GCGCACACGCCACCGCCGCGCTGCGCGACGCGCTGCGCGCCGCGCAGGCC
GCCGCCGACGTGGGCGCGCAGCGCGCCGCGCTGCAGTGGCTGGCGCGCGT
GGAGCCGCCGTGCCACGCCGCGTCGCTGCTACGCCACGCGCGCGACGCGC
CCGCTCTGGCGCGGCTGGCGCTGCTGTGCGACGCGCCGCCGCGCCCGCGC
GCGCTGGCGTCGTCGCTGCGCGCGTCCGTGGACGCGCTGCTGCTGGCGGC
CGCTGCGTGGCAGCTGCGCGCCGCGCTGCCCACCGCGCTGGGCGTTGCGC
GCAGCGCGGTGCGGCGCGCGCAACTGCAACACGCGCCGCCTGCCGAGCTG
GCGCGCGCCGCCGTCGCGCTCGCAGAGCTCACCGCCGCCGACGGCCACGC
GCCGCGCGCAGAGCGCCTGCTGCTACGCTGCATGGCGCGAGTGCAGGCAG
CGGCGGCGGCGGCGGCGGCGTCCACCGTGGCGCCGGAGCTGCTGTCGCTG
CGTCGCGCGCTCACCGCCGTGCGCTTCGAGCGCGCCGTGGCCGCGGCGCA
GCTGGTGCGCGCCGACACGCTGCGCCGGCGGCTGCATGCGTTTGCGGCGG
CGGCGCAGGCGCACGCGCTGGCGCTCAGCGCGCCGGACGTGGCGCTGGAC
GCGCTGCGCGCCGACGCACGCTGGCTGTTGGCGCGCGGCCACGCGCGCGC
CGCCGCCGCCGCCGCGCTGGCGCTGGCGCGCCGCGCCGCCGCGCTCGGAC
GCGCGTGGCGCGTGGCAGACGCGCTGCGCGTGCGCGCAGACGCGCTGCTG
GCGGGCGGCGACGGCGCCGGCGCGCTGGCGCACGCGCTGCACGCCGCGTC
GCTGGCGCACGCGCTGCGGCTGTGCGCGCCGCGCGTGCGCGCGCTGCTCA
GCGCGGTGCGCGCGCTGCTGCGCTTGAACGCGCGCGCCGCGCACGCGCTG
CGGCTGCTGCGACCGCTGCTGCCGCTCGCGCTGGAGGGGCTTGGCGCCGC
CGTGCGCGCGCAAGCGCTCTTGCTGTACGCGCACTGCGTGGCAAAGCGCG
CCGCGGAGCGCCGGCAGCGCCCGCCCGAGCAGGCGATGGCGCTGGCGCAG
CGCGCGCTCCACGCCTTTCGACAGCTGCGCCATGCTAACGGCGTGCGCGA
TTGTCTGTATACGCTGGCGCGCCTGTACCACTGCACGCAGCAGTTTGCTC
TGCGTAATCGCATGGCGTGTCTGTTTAGGCAGCACGTTCGCACAATTGGC
ACACCAGACGCTGTGCAACAAACAACAAACAGCCTCGTCGACCACGACCT
CGTCTAA

protein sequence of Ggra9487.t1

>Ggra9487.t1 ID=Ggra9487.t1|Name=Ggra9487.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=719bp
MNFIGRRRRSQRSSGGAIAIMEPAAAARFLSANNLLLALAASTPAIARTH
APFYPRLHQLIASAPPPHASLQRALSQLLVEPDAAAAAPYVRDGALPPAS
SPLPLARLLWLLLRRALSSPHALAQLVSLLELHTHAHAQLRVAYYQRHSR
VALFLRKAVVAFHSLSFESLMRLHDALRLQSEPPPPPHQLSTHARRLAAS
HPLPPPLFSQLQQHASRAAAAAAATAVEARSPLTMLTQLESARRADLSTA
LAATHRHFDTHAAQLPPHHAALALGILHARFSAGAHATAALRDALRAAQA
AADVGAQRAALQWLARVEPPCHAASLLRHARDAPALARLALLCDAPPRPR
ALASSLRASVDALLLAAAAWQLRAALPTALGVARSAVRRAQLQHAPPAEL
ARAAVALAELTAADGHAPRAERLLLRCMARVQAAAAAAAASTVAPELLSL
RRALTAVRFERAVAAAQLVRADTLRRRLHAFAAAAQAHALALSAPDVALD
ALRADARWLLARGHARAAAAAALALARRAAALGRAWRVADALRVRADALL
AGGDGAGALAHALHAASLAHALRLCAPRVRALLSAVRALLRLNARAAHAL
RLLRPLLPLALEGLGAAVRAQALLLYAHCVAKRAAERRQRPPEQAMALAQ
RALHAFRQLRHANGVRDCLYTLARLYHCTQQFALRNRMACLFRQHVRTIG
TPDAVQQTTNSLVDHDLV*

mRNA from alignment at tig00000873_pilon:163852..166008+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra9487.t1 ID=Ggra9487.t1|Name=Ggra9487.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000873_pilon:163852..166008+ (Gracilaria gracilis GNS1m male)
ATGAACTTCATCGGCCGCCGTCGCCGATCTCAGAGGAGCAGCGGAGGCGC
CATCGCCATCATGGAGCCGGCCGCGGCGGCGCGCTTCCTCAGCGCGAACA
ACTTGCTGCTGGCGCTGGCGGCGTCCACGCCGGCCATCGCGCGCACGCAC
GCGCCCTTCTACCCGCGGCTGCACCAGCTGATCGCGTCGGCGCCGCCGCC
GCACGCGTCGCTGCAGCGCGCGCTATCGCAGCTGTTGGTGGAGCCCGACG
CCGCCGCCGCCGCGCCGTACGTGCGCGACGGCGCGCTGCCGCCTGCGTCG
TCGCCGCTGCCGCTGGCGCGGCTGCTGTGGCTGCTGCTGCGCCGCGCGCT
GTCGTCGCCGCACGCGCTGGCGCAGCTGGTCTCGCTGCTGGAGCTGCACA
CGCACGCGCACGCGCAGCTGCGCGTCGCCTACTACCAGCGCCACTCGCGC
GTGGCGCTGTTCCTGCGCAAGGCCGTGGTCGCCTTCCACTCGCTGTCGTT
CGAGTCGCTCATGCGCCTGCACGACGCGCTGCGCCTCCAAAGCGAGCCGC
CGCCGCCGCCGCACCAGCTCAGCACGCACGCGCGTCGCCTCGCCGCGTCG
CACCCGCTACCGCCGCCGCTCTTCTCGCAGCTGCAGCAGCACGCATCGCG
CGCCGCCGCCGCCGCCGCTGCCACCGCCGTCGAGGCGCGCTCGCCGCTCA
CCATGCTGACGCAGCTAGAGAGCGCGCGTCGCGCCGATCTATCCACCGCA
CTCGCCGCCACTCACCGCCACTTTGACACGCACGCCGCGCAGCTACCGCC
GCACCACGCCGCGCTGGCGCTAGGCATTCTGCACGCGCGCTTCTCCGCCG
GCGCACACGCCACCGCCGCGCTGCGCGACGCGCTGCGCGCCGCGCAGGCC
GCCGCCGACGTGGGCGCGCAGCGCGCCGCGCTGCAGTGGCTGGCGCGCGT
GGAGCCGCCGTGCCACGCCGCGTCGCTGCTACGCCACGCGCGCGACGCGC
CCGCTCTGGCGCGGCTGGCGCTGCTGTGCGACGCGCCGCCGCGCCCGCGC
GCGCTGGCGTCGTCGCTGCGCGCGTCCGTGGACGCGCTGCTGCTGGCGGC
CGCTGCGTGGCAGCTGCGCGCCGCGCTGCCCACCGCGCTGGGCGTTGCGC
GCAGCGCGGTGCGGCGCGCGCAACTGCAACACGCGCCGCCTGCCGAGCTG
GCGCGCGCCGCCGTCGCGCTCGCAGAGCTCACCGCCGCCGACGGCCACGC
GCCGCGCGCAGAGCGCCTGCTGCTACGCTGCATGGCGCGAGTGCAGGCAG
CGGCGGCGGCGGCGGCGGCGTCCACCGTGGCGCCGGAGCTGCTGTCGCTG
CGTCGCGCGCTCACCGCCGTGCGCTTCGAGCGCGCCGTGGCCGCGGCGCA
GCTGGTGCGCGCCGACACGCTGCGCCGGCGGCTGCATGCGTTTGCGGCGG
CGGCGCAGGCGCACGCGCTGGCGCTCAGCGCGCCGGACGTGGCGCTGGAC
GCGCTGCGCGCCGACGCACGCTGGCTGTTGGCGCGCGGCCACGCGCGCGC
CGCCGCCGCCGCCGCGCTGGCGCTGGCGCGCCGCGCCGCCGCGCTCGGAC
GCGCGTGGCGCGTGGCAGACGCGCTGCGCGTGCGCGCAGACGCGCTGCTG
GCGGGCGGCGACGGCGCCGGCGCGCTGGCGCACGCGCTGCACGCCGCGTC
GCTGGCGCACGCGCTGCGGCTGTGCGCGCCGCGCGTGCGCGCGCTGCTCA
GCGCGGTGCGCGCGCTGCTGCGCTTGAACGCGCGCGCCGCGCACGCGCTG
CGGCTGCTGCGACCGCTGCTGCCGCTCGCGCTGGAGGGGCTTGGCGCCGC
CGTGCGCGCGCAAGCGCTCTTGCTGTACGCGCACTGCGTGGCAAAGCGCG
CCGCGGAGCGCCGGCAGCGCCCGCCCGAGCAGGCGATGGCGCTGGCGCAG
CGCGCGCTCCACGCCTTTCGACAGCTGCGCCATGCTAACGGCGTGCGCGA
TTGTCTGTATACGCTGGCGCGCCTGTACCACTGCACGCAGCAGTTTGCTC
TGCGTAATCGCATGGCGTGTCTGTTTAGGCAGCACGTTCGCACAATTGGC
ACACCAGACGCTGTGCAACAAACAACAAACAGCCTCGTCGACCACGACCT
CGTCTAA

Coding sequence (CDS) from alignment at tig00000873_pilon:163852..166008+

>Ggra9487.t1 ID=Ggra9487.t1|Name=Ggra9487.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2157bp|location=Sequence derived from alignment at tig00000873_pilon:163852..166008+ (Gracilaria gracilis GNS1m male)
ATGAACTTCATCGGCCGCCGTCGCCGATCTCAGAGGAGCAGCGGAGGCGC
CATCGCCATCATGGAGCCGGCCGCGGCGGCGCGCTTCCTCAGCGCGAACA
ACTTGCTGCTGGCGCTGGCGGCGTCCACGCCGGCCATCGCGCGCACGCAC
GCGCCCTTCTACCCGCGGCTGCACCAGCTGATCGCGTCGGCGCCGCCGCC
GCACGCGTCGCTGCAGCGCGCGCTATCGCAGCTGTTGGTGGAGCCCGACG
CCGCCGCCGCCGCGCCGTACGTGCGCGACGGCGCGCTGCCGCCTGCGTCG
TCGCCGCTGCCGCTGGCGCGGCTGCTGTGGCTGCTGCTGCGCCGCGCGCT
GTCGTCGCCGCACGCGCTGGCGCAGCTGGTCTCGCTGCTGGAGCTGCACA
CGCACGCGCACGCGCAGCTGCGCGTCGCCTACTACCAGCGCCACTCGCGC
GTGGCGCTGTTCCTGCGCAAGGCCGTGGTCGCCTTCCACTCGCTGTCGTT
CGAGTCGCTCATGCGCCTGCACGACGCGCTGCGCCTCCAAAGCGAGCCGC
CGCCGCCGCCGCACCAGCTCAGCACGCACGCGCGTCGCCTCGCCGCGTCG
CACCCGCTACCGCCGCCGCTCTTCTCGCAGCTGCAGCAGCACGCATCGCG
CGCCGCCGCCGCCGCCGCTGCCACCGCCGTCGAGGCGCGCTCGCCGCTCA
CCATGCTGACGCAGCTAGAGAGCGCGCGTCGCGCCGATCTATCCACCGCA
CTCGCCGCCACTCACCGCCACTTTGACACGCACGCCGCGCAGCTACCGCC
GCACCACGCCGCGCTGGCGCTAGGCATTCTGCACGCGCGCTTCTCCGCCG
GCGCACACGCCACCGCCGCGCTGCGCGACGCGCTGCGCGCCGCGCAGGCC
GCCGCCGACGTGGGCGCGCAGCGCGCCGCGCTGCAGTGGCTGGCGCGCGT
GGAGCCGCCGTGCCACGCCGCGTCGCTGCTACGCCACGCGCGCGACGCGC
CCGCTCTGGCGCGGCTGGCGCTGCTGTGCGACGCGCCGCCGCGCCCGCGC
GCGCTGGCGTCGTCGCTGCGCGCGTCCGTGGACGCGCTGCTGCTGGCGGC
CGCTGCGTGGCAGCTGCGCGCCGCGCTGCCCACCGCGCTGGGCGTTGCGC
GCAGCGCGGTGCGGCGCGCGCAACTGCAACACGCGCCGCCTGCCGAGCTG
GCGCGCGCCGCCGTCGCGCTCGCAGAGCTCACCGCCGCCGACGGCCACGC
GCCGCGCGCAGAGCGCCTGCTGCTACGCTGCATGGCGCGAGTGCAGGCAG
CGGCGGCGGCGGCGGCGGCGTCCACCGTGGCGCCGGAGCTGCTGTCGCTG
CGTCGCGCGCTCACCGCCGTGCGCTTCGAGCGCGCCGTGGCCGCGGCGCA
GCTGGTGCGCGCCGACACGCTGCGCCGGCGGCTGCATGCGTTTGCGGCGG
CGGCGCAGGCGCACGCGCTGGCGCTCAGCGCGCCGGACGTGGCGCTGGAC
GCGCTGCGCGCCGACGCACGCTGGCTGTTGGCGCGCGGCCACGCGCGCGC
CGCCGCCGCCGCCGCGCTGGCGCTGGCGCGCCGCGCCGCCGCGCTCGGAC
GCGCGTGGCGCGTGGCAGACGCGCTGCGCGTGCGCGCAGACGCGCTGCTG
GCGGGCGGCGACGGCGCCGGCGCGCTGGCGCACGCGCTGCACGCCGCGTC
GCTGGCGCACGCGCTGCGGCTGTGCGCGCCGCGCGTGCGCGCGCTGCTCA
GCGCGGTGCGCGCGCTGCTGCGCTTGAACGCGCGCGCCGCGCACGCGCTG
CGGCTGCTGCGACCGCTGCTGCCGCTCGCGCTGGAGGGGCTTGGCGCCGC
CGTGCGCGCGCAAGCGCTCTTGCTGTACGCGCACTGCGTGGCAAAGCGCG
CCGCGGAGCGCCGGCAGCGCCCGCCCGAGCAGGCGATGGCGCTGGCGCAG
CGCGCGCTCCACGCCTTTCGACAGCTGCGCCATGCTAACGGCGTGCGCGA
TTGTCTGTATACGCTGGCGCGCCTGTACCACTGCACGCAGCAGTTTGCTC
TGCGTAATCGCATGGCGTGTCTGTTTAGGCAGCACGTTCGCACAATTGGC
ACACCAGACGCTGTGCAACAAACAACAAACAGCCTCGTCGACCACGACCT
CGTCTAA