Ggra2574.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2574.t1
Unique NameGgra2574.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length283
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:808910..809856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1280694.AUJQ01000007_gene1015
PFAMsMethyltransf_23
Max annot lvl186801|Clostridia
Evalue1.78e-27
EggNOG OGsCOG0500@1|root,COG2226@2|Bacteria,1VKY5@1239|Firmicutes,25Q1D@186801|Clostridia,3NHHK@46205|Pseudobutyrivibrio
DescriptionMethyltransferase domain
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2574Ggra2574Gracilaria gracilis GNS1m malegenetig00000005_pilon 808910..809856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2574.t1Ggra2574.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 808910..809856 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2574.t1.stop1Ggra2574.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 808910..808912 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2574.t1.CDS1Ggra2574.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 808910..809161 -
Ggra2574.t1.CDS2Ggra2574.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000005_pilon 809260..809856 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2574.t1.exon1Ggra2574.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 808910..809161 -
Ggra2574.t1.exon2Ggra2574.t1.exon2Gracilaria gracilis GNS1m maleexontig00000005_pilon 809260..809856 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2574.t1.intron1Ggra2574.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000005_pilon 809162..809259 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2574.t1.start1Ggra2574.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 809854..809856 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2574.t1 ID=Ggra2574.t1|Name=Ggra2574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=283bp
MPYLPKRLSTTFGNLREFRLITFLLLVSLLVNGFLSLCLGLYPPSVAVSQ
GNRQNSVTHCCGPGCRQSLNEAASEVTDHYDNHYFQWQTRLGREKAASRN
WNEFFETKPTDTVADLGAGGGHILATLNVSRRIAVEINPVARASIHSNYP
EQIETFTYPEDVPDHTVDIFFSTSAIEHFECPLTELREMTRKLRKGGRVI
IGIKNEGVQYAGSVKKDNIDQHLYTWNRQLLFNLLQTAGLHVTSVDPHIS
KVIKTGIEWTHPDNFTTYKTFIYHWARAIKKN*
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spliced messenger RNA

>Ggra2574.t1 ID=Ggra2574.t1|Name=Ggra2574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=849bp|location=Sequence derived from alignment at tig00000005_pilon:808910..809856- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGTACCTACCCAAGAGATTATCAACCACTTTCGGAAATCTGCGAGA
ATTCCGTCTGATCACTTTTCTCCTCCTGGTTTCCCTCCTGGTCAATGGGT
TTCTTTCTCTATGTTTGGGATTATATCCCCCGTCAGTCGCTGTATCCCAG
GGAAATCGACAAAACTCAGTAACACACTGTTGCGGTCCAGGATGTCGACA
ATCTCTGAACGAAGCTGCTAGTGAGGTAACTGATCATTATGATAATCATT
ACTTCCAATGGCAGACCCGCCTTGGTCGGGAAAAGGCTGCCTCACGTAAT
TGGAACGAGTTCTTTGAGACAAAACCAACTGACACAGTCGCTGATCTTGG
CGCTGGTGGTGGTCATATTTTGGCAACGCTGAATGTTTCTCGTCGTATTG
CTGTTGAGATTAACCCAGTTGCAAGGGCTTCTATCCACTCCAATTATCCG
GAGCAGATTGAGACGTTTACCTATCCCGAAGATGTTCCTGACCACACTGT
GGACATCTTCTTTTCGACAAGTGCAATCGAGCATTTTGAGTGTCCCCTTA
CCGAGCTCCGTGAGATGACAAGAAAACTTCGCAAAGGAGGTCGAGTGATA
ATTGGCATAAAGAACGAAGGTGTACAATATGCTGGCAGTGTGAAAAAGGA
TAATATAGATCAACATCTTTACACTTGGAATCGGCAGTTACTTTTCAATC
TTCTGCAGACTGCTGGCTTACATGTCACAAGTGTTGATCCCCACATCAGC
AAAGTCATTAAAACGGGAATAGAATGGACTCATCCCGACAACTTCACAAC
ATATAAGACGTTCATTTACCATTGGGCCAGAGCTATCAAGAAGAATTAG
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protein sequence of Ggra2574.t1

>Ggra2574.t1 ID=Ggra2574.t1|Name=Ggra2574.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=283bp
MPYLPKRLSTTFGNLREFRLITFLLLVSLLVNGFLSLCLGLYPPSVAVSQ
GNRQNSVTHCCGPGCRQSLNEAASEVTDHYDNHYFQWQTRLGREKAASRN
WNEFFETKPTDTVADLGAGGGHILATLNVSRRIAVEINPVARASIHSNYP
EQIETFTYPEDVPDHTVDIFFSTSAIEHFECPLTELREMTRKLRKGGRVI
IGIKNEGVQYAGSVKKDNIDQHLYTWNRQLLFNLLQTAGLHVTSVDPHIS
KVIKTGIEWTHPDNFTTYKTFIYHWARAIKKN*
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mRNA from alignment at tig00000005_pilon:808910..809856-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2574.t1 ID=Ggra2574.t1|Name=Ggra2574.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=947bp|location=Sequence derived from alignment at tig00000005_pilon:808910..809856- (Gracilaria gracilis GNS1m male)
ATGCCGTACCTACCCAAGAGATTATCAACCACTTTCGGAAATCTGCGAGA
ATTCCGTCTGATCACTTTTCTCCTCCTGGTTTCCCTCCTGGTCAATGGGT
TTCTTTCTCTATGTTTGGGATTATATCCCCCGTCAGTCGCTGTATCCCAG
GGAAATCGACAAAACTCAGTAACACACTGTTGCGGTCCAGGATGTCGACA
ATCTCTGAACGAAGCTGCTAGTGAGGTAACTGATCATTATGATAATCATT
ACTTCCAATGGCAGACCCGCCTTGGTCGGGAAAAGGCTGCCTCACGTAAT
TGGAACGAGTTCTTTGAGACAAAACCAACTGACACAGTCGCTGATCTTGG
CGCTGGTGGTGGTCATATTTTGGCAACGCTGAATGTTTCTCGTCGTATTG
CTGTTGAGATTAACCCAGTTGCAAGGGCTTCTATCCACTCCAATTATCCG
GAGCAGATTGAGACGTTTACCTATCCCGAAGATGTTCCTGACCACACTGT
GGACATCTTCTTTTCGACAAGTGCAATCGAGCATTTTGAGTGTCCCCTTA
CCGAGCTCCGTGAGATGACAAGAAAACTTCGCAAAGGAGGTCGAGTGGTA
AGTTACTTCTCTGCAATTCCTCACAGAAGCTCTCTCGATTCTTCTTTCGA
GCAAATTCTCACCATGTTTCCCTTTGTTGCGCAATAATTCCGCAGATAAT
TGGCATAAAGAACGAAGGTGTACAATATGCTGGCAGTGTGAAAAAGGATA
ATATAGATCAACATCTTTACACTTGGAATCGGCAGTTACTTTTCAATCTT
CTGCAGACTGCTGGCTTACATGTCACAAGTGTTGATCCCCACATCAGCAA
AGTCATTAAAACGGGAATAGAATGGACTCATCCCGACAACTTCACAACAT
ATAAGACGTTCATTTACCATTGGGCCAGAGCTATCAAGAAGAATTAG
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Coding sequence (CDS) from alignment at tig00000005_pilon:808910..809856-

>Ggra2574.t1 ID=Ggra2574.t1|Name=Ggra2574.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=849bp|location=Sequence derived from alignment at tig00000005_pilon:808910..809856- (Gracilaria gracilis GNS1m male)
ATGCCGTACCTACCCAAGAGATTATCAACCACTTTCGGAAATCTGCGAGA
ATTCCGTCTGATCACTTTTCTCCTCCTGGTTTCCCTCCTGGTCAATGGGT
TTCTTTCTCTATGTTTGGGATTATATCCCCCGTCAGTCGCTGTATCCCAG
GGAAATCGACAAAACTCAGTAACACACTGTTGCGGTCCAGGATGTCGACA
ATCTCTGAACGAAGCTGCTAGTGAGGTAACTGATCATTATGATAATCATT
ACTTCCAATGGCAGACCCGCCTTGGTCGGGAAAAGGCTGCCTCACGTAAT
TGGAACGAGTTCTTTGAGACAAAACCAACTGACACAGTCGCTGATCTTGG
CGCTGGTGGTGGTCATATTTTGGCAACGCTGAATGTTTCTCGTCGTATTG
CTGTTGAGATTAACCCAGTTGCAAGGGCTTCTATCCACTCCAATTATCCG
GAGCAGATTGAGACGTTTACCTATCCCGAAGATGTTCCTGACCACACTGT
GGACATCTTCTTTTCGACAAGTGCAATCGAGCATTTTGAGTGTCCCCTTA
CCGAGCTCCGTGAGATGACAAGAAAACTTCGCAAAGGAGGTCGAGTGATA
ATTGGCATAAAGAACGAAGGTGTACAATATGCTGGCAGTGTGAAAAAGGA
TAATATAGATCAACATCTTTACACTTGGAATCGGCAGTTACTTTTCAATC
TTCTGCAGACTGCTGGCTTACATGTCACAAGTGTTGATCCCCACATCAGC
AAAGTCATTAAAACGGGAATAGAATGGACTCATCCCGACAACTTCACAAC
ATATAAGACGTTCATTTACCATTGGGCCAGAGCTATCAAGAAGAATTAG
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