Ggra9504.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9504.t1
Unique NameGgra9504.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length342
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:333046..334071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog15368.BRADI3G19010.1
PFAMsCCT,zf-B_box
Max annot lvl35493|Streptophyta
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009889,GO:0009909,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048580,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051239,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000026,GO:2000112,GO:2000241,GO:2001141
Evalue3.55e-09
EggNOG OGsCOG5641@1|root,KOG1601@2759|Eukaryota,37P0B@33090|Viridiplantae,3GBNA@35493|Streptophyta,3KZ9I@4447|Liliopsida,3IHF5@38820|Poales
DescriptionB-Box-type zinc finger
COG categoryK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9504Ggra9504Gracilaria gracilis GNS1m malegenetig00000873_pilon 333046..334071 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9504.t1.start1Ggra9504.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000873_pilon 333046..333048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9504.t1.CDS1Ggra9504.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000873_pilon 333046..334071 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9504.t1.exon1Ggra9504.t1.exon1Gracilaria gracilis GNS1m maleexontig00000873_pilon 333046..334071 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9504.t1.stop1Ggra9504.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000873_pilon 334069..334071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9504.t1Ggra9504.t1Gracilaria gracilis GNS1m malepolypeptidetig00000873_pilon 333046..334071 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9504.t1 ID=Ggra9504.t1|Name=Ggra9504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=342bp
MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLS
AAAAPPLHAAALSSSCDTLLDVSDSCTPPRLHQHTHPLLRLFSPCTTTTA
TTTATTTASTAPCDAPPSPPSPPHPYSYAPPESPPLHVPAWGLDALVPLF
PAAAAHSPPPPPPLLPPPLPPLLPSPPPPPLSDIADAFVKKEAETLLQSS
GYALDALVPQMHRTHLPPPQPPQPQLRRRSRPLPPRSTISTQSYAAVSVG
VGGGDGDDAAVVPLSLTALSAESSGGAAVGAGAGATSARARDRLAALQRF
RNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGRHAIVKR*
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spliced messenger RNA

>Ggra9504.t1 ID=Ggra9504.t1|Name=Ggra9504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000873_pilon:333046..334071+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTACGCTGTCCATCTGCGCGGCGTGTACAAGCGCGGACGCGGTGCT
GTACTGCGACGCAGACGCCGCCTTTCTGTGCGCGCCGTGCGACAGCGCCA
TCCACTCGGCCAACAAGCTGGCGCGTCGCCATCAGCGCGTgccgctcagc
gccgccgccgcgccgccgcttcacgccgccgcgctgtcctcctcgtgcga
cacgctgcttgacgtctccgacagctgcacgccgccgcgccTGCACCAGC
ACACCCACCCGTTGCTGCGCCTGTTCTCGCCATGcaccaccaccaccgcc
accaccaccgccaccaccaccGCTTccaccgcgccgtgcgacgcgccgcc
gtcgccgccgtcgccgccgcacccctactcgtacgcgccgcccgagtcgc
cgccgctgcACGTGCCCGCCTGGGGGCTGGACGCGCTGGTGCCGCTGTTC
Cccgccgccgccgcgcactcgccgccgccgccgccgccgctgctgccgcc
gccgctgccgccgctgctgccgtcgccgccgccgccgccgcTGAGCGACA
TTGCGGACGCCTTTGTGAAGAAGGAGGCCGAGACGCTGCTGCAGAGCTCG
GGCTACGCGCTGGACGCGCTGGTGCCGCAGATGCACCGCACGCACCTGCC
gccgccgcagccgccgcagccgcagctgcgccgccgcagccgccCGCTGC
CTCCGCGCAGCACCATCAGCACGCAGTCATACGCCGCGGTCAGCGTGggc
gtgggcgggggcgacggcgacgacgccgccgTGGTGCCGCTCAGTCTGAC
CGCGCTCAGCGCCGAGAGCAGCGGCGGCGCGGCTGTCGGTGCTGGCGCTG
GTGCCACCAGCGCGCGCGCGCGCGATCGGCTGGCGGCGCTGCAGCGCTTC
CGCAACAAGCGCGCCAACCGCAGCTTTCGCAAGCGCGTGCGCTACGCGTG
CCGCAAGCAGCTGGCCGACAGCCGCCCGCGCGTCAAGGGGCGCTTCGTGG
GGCGCCACGCCATCGTCAAGCGCTGA
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protein sequence of Ggra9504.t1

>Ggra9504.t1 ID=Ggra9504.t1|Name=Ggra9504.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=342bp
MSTLSICAACTSADAVLYCDADAAFLCAPCDSAIHSANKLARRHQRVPLS
AAAAPPLHAAALSSSCDTLLDVSDSCTPPRLHQHTHPLLRLFSPCTTTTA
TTTATTTASTAPCDAPPSPPSPPHPYSYAPPESPPLHVPAWGLDALVPLF
PAAAAHSPPPPPPLLPPPLPPLLPSPPPPPLSDIADAFVKKEAETLLQSS
GYALDALVPQMHRTHLPPPQPPQPQLRRRSRPLPPRSTISTQSYAAVSVG
VGGGDGDDAAVVPLSLTALSAESSGGAAVGAGAGATSARARDRLAALQRF
RNKRANRSFRKRVRYACRKQLADSRPRVKGRFVGRHAIVKR*
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mRNA from alignment at tig00000873_pilon:333046..334071+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9504.t1 ID=Ggra9504.t1|Name=Ggra9504.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1026bp|location=Sequence derived from alignment at tig00000873_pilon:333046..334071+ (Gracilaria gracilis GNS1m male)
ATGAGTACGCTGTCCATCTGCGCGGCGTGTACAAGCGCGGACGCGGTGCT
GTACTGCGACGCAGACGCCGCCTTTCTGTGCGCGCCGTGCGACAGCGCCA
TCCACTCGGCCAACAAGCTGGCGCGTCGCCATCAGCGCGTgccgctcagc
gccgccgccgcgccgccgcttcacgccgccgcgctgtcctcctcgtgcga
cacgctgcttgacgtctccgacagctgcacgccgccgcgccTGCACCAGC
ACACCCACCCGTTGCTGCGCCTGTTCTCGCCATGcaccaccaccaccgcc
accaccaccgccaccaccaccGCTTccaccgcgccgtgcgacgcgccgcc
gtcgccgccgtcgccgccgcacccctactcgtacgcgccgcccgagtcgc
cgccgctgcACGTGCCCGCCTGGGGGCTGGACGCGCTGGTGCCGCTGTTC
Cccgccgccgccgcgcactcgccgccgccgccgccgccgctgctgccgcc
gccgctgccgccgctgctgccgtcgccgccgccgccgccgcTGAGCGACA
TTGCGGACGCCTTTGTGAAGAAGGAGGCCGAGACGCTGCTGCAGAGCTCG
GGCTACGCGCTGGACGCGCTGGTGCCGCAGATGCACCGCACGCACCTGCC
gccgccgcagccgccgcagccgcagctgcgccgccgcagccgccCGCTGC
CTCCGCGCAGCACCATCAGCACGCAGTCATACGCCGCGGTCAGCGTGggc
gtgggcgggggcgacggcgacgacgccgccgTGGTGCCGCTCAGTCTGAC
CGCGCTCAGCGCCGAGAGCAGCGGCGGCGCGGCTGTCGGTGCTGGCGCTG
GTGCCACCAGCGCGCGCGCGCGCGATCGGCTGGCGGCGCTGCAGCGCTTC
CGCAACAAGCGCGCCAACCGCAGCTTTCGCAAGCGCGTGCGCTACGCGTG
CCGCAAGCAGCTGGCCGACAGCCGCCCGCGCGTCAAGGGGCGCTTCGTGG
GGCGCCACGCCATCGTCAAGCGCTGA
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Coding sequence (CDS) from alignment at tig00000873_pilon:333046..334071+

>Ggra9504.t1 ID=Ggra9504.t1|Name=Ggra9504.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1026bp|location=Sequence derived from alignment at tig00000873_pilon:333046..334071+ (Gracilaria gracilis GNS1m male)
ATGAGTACGCTGTCCATCTGCGCGGCGTGTACAAGCGCGGACGCGGTGCT
GTACTGCGACGCAGACGCCGCCTTTCTGTGCGCGCCGTGCGACAGCGCCA
TCCACTCGGCCAACAAGCTGGCGCGTCGCCATCAGCGCGTgccgctcagc
gccgccgccgcgccgccgcttcacgccgccgcgctgtcctcctcgtgcga
cacgctgcttgacgtctccgacagctgcacgccgccgcgccTGCACCAGC
ACACCCACCCGTTGCTGCGCCTGTTCTCGCCATGcaccaccaccaccgcc
accaccaccgccaccaccaccGCTTccaccgcgccgtgcgacgcgccgcc
gtcgccgccgtcgccgccgcacccctactcgtacgcgccgcccgagtcgc
cgccgctgcACGTGCCCGCCTGGGGGCTGGACGCGCTGGTGCCGCTGTTC
Cccgccgccgccgcgcactcgccgccgccgccgccgccgctgctgccgcc
gccgctgccgccgctgctgccgtcgccgccgccgccgccgcTGAGCGACA
TTGCGGACGCCTTTGTGAAGAAGGAGGCCGAGACGCTGCTGCAGAGCTCG
GGCTACGCGCTGGACGCGCTGGTGCCGCAGATGCACCGCACGCACCTGCC
gccgccgcagccgccgcagccgcagctgcgccgccgcagccgccCGCTGC
CTCCGCGCAGCACCATCAGCACGCAGTCATACGCCGCGGTCAGCGTGggc
gtgggcgggggcgacggcgacgacgccgccgTGGTGCCGCTCAGTCTGAC
CGCGCTCAGCGCCGAGAGCAGCGGCGGCGCGGCTGTCGGTGCTGGCGCTG
GTGCCACCAGCGCGCGCGCGCGCGATCGGCTGGCGGCGCTGCAGCGCTTC
CGCAACAAGCGCGCCAACCGCAGCTTTCGCAAGCGCGTGCGCTACGCGTG
CCGCAAGCAGCTGGCCGACAGCCGCCCGCGCGTCAAGGGGCGCTTCGTGG
GGCGCCACGCCATCGTCAAGCGCTGA
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