Ggra9491.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra9491.t1
Unique NameGgra9491.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Homology
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A2V3J5P9 (Chlorophyll a-b binding protein 6, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5P9_9FLOR)

HSP 1 Score: 376 bits (965), Expect = 4.520e-131
Identity = 170/213 (79.81%), Postives = 193/213 (90.61%), Query Frame = 0
Query:    1 MVAFITPVVTGFSTALRGQAVCGSPRVSRSAVSMKISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPGHLY 213
            M AF+ P VTGFS +LRG+AVC +PRVSRSAVSMK+SP+MPFMEQP TLDD SI+GNVGFDPLNLSQVF+ KFMQEAEIKHCRVAML VLGY++PE F FPWGK+LNPIEAHDFFVKTGGMSQ+LLF+ F E+FG +AL  TL+G+RAPGYFGFDPLGLGKDPEKFK+YHLSE+KNGRLAMCAFGG YHATLLT QG  +QL++F+ALPGHLY
Sbjct:    1 MFAFVAPAVTGFSASLRGKAVCNAPRVSRSAVSMKVSPSMPFMEQPATLDDGSIVGNVGFDPLNLSQVFDLKFMQEAEIKHCRVAMLAVLGYVVPEFFLFPWGKTLNPIEAHDFFVKTGGMSQILLFVSFFEVFGTLALIRTLQGERAPGYFGFDPLGLGKDPEKFKRYHLSELKNGRLAMCAFGGFYHATLLTNQGVFEQLSNFKALPGHLY 213          
BLAST of Ggra9491.t1 vs. uniprot
Match: R7QUA5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUA5_CHOCR)

HSP 1 Score: 327 bits (837), Expect = 1.490e-111
Identity = 153/209 (73.21%), Postives = 175/209 (83.73%), Query Frame = 0
Query:    1 MVAFITPVVTGFSTALRGQAVCGSPRVSRSAVSMKISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALP 209
            M AF+ PVVTGFS++L G  VC +  VSR AVSMKISPAMPFMEQP +LDD SI GN GFDP NLS  FN K+MQEAEIKHCRVAMLGVLG +IPE+ +FP  K++ P EAHDFFVKTGGMSQ+LLF+ F EIFG++ALK TL+G RAPGYF FDPLGLGK+P+ FKKY LSEIKNGRLAMCAFGGLYHA L++K G +DQLTHFQ +P
Sbjct:    1 MTAFVAPVVTGFSSSLSGTRVCRAATVSRHAVSMKISPAMPFMEQPASLDDPSIPGNAGFDPFNLSGAFNLKWMQEAEIKHCRVAMLGVLGVVIPEIIRFPGVKAMTPTEAHDFFVKTGGMSQILLFVSFFEIFGSVALKATLDGTRAPGYFAFDPLGLGKNPDVFKKYQLSEIKNGRLAMCAFGGLYHAGLVSKTGVIDQLTHFQGVP 209          
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A7S0F4D6 (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F4D6_9CRYP)

HSP 1 Score: 211 bits (538), Expect = 9.390e-66
Identity = 107/220 (48.64%), Postives = 147/220 (66.82%), Query Frame = 0
Query:    2 VAFITPVVTGFSTALRGQAVCGSPRVSRSAVSM---------KISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGL--GKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPG 210
            ++F+    T  + A        +P  SR+AVS            S ++PF++QPT LD  S+ G+VGFDPL  S+VF+ K ++EAE+KH R+AML VLG+++ E + FP+   ++PIEAHD  VK+GGMSQ+LL+  FLEIFG IAL +T++G R PG F FDPLGL  GK+    +KY L+EIK+GRLAM AFGG  H   +TKQG  +QL +F+ +PG
Sbjct:   13 ISFLAAAATAAAFAPAPAGRLSAPAASRAAVSRGPRMAVFEGSFSESVPFLKQPTNLDG-SLPGDVGFDPLGFSEVFDVKVLREAELKHGRIAMLAVLGWLVQESYTFPFFDKVSPIEAHDLLVKSGGMSQILLWTSFLEIFGGIALFQTIQGSRYPGDFSFDPLGLSQGKNEANLEKYQLAEIKHGRLAMIAFGGFAHQYFITKQGVFEQLGNFKPIPG 231          
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A5J4ZAY0 (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4ZAY0_PORPP)

HSP 1 Score: 207 bits (526), Expect = 2.390e-64
Identity = 97/192 (50.52%), Postives = 134/192 (69.79%), Query Frame = 0
Query:   19 QAVCGSPRVSRSAVSMKISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPW--GKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 208
            ++VC S  V+ + + M  S +MPFME P  LD  S++G+VGFDPL  ++ F+ K+M+EAE+KHCR+ ML VLG+++ E+F+ P   G      +AHD+FV  G + Q+LLF+ F E+FG +AL ET++G R PG FGFDPL LGK+P  ++KY LSE+KNGRLAM A GG  H   + KQG L QL HF+ +
Sbjct:   19 RSVCSS--VAAAPMKMVTSKSMPFMEAPPALDG-SMVGDVGFDPLGFTRTFDVKWMREAELKHCRICMLAVLGFVVQEIFRLPMYSGAPKLATDAHDYFVSQGALKQILLFISFFEVFGTVALWETMQGTREPGVFGFDPLNLGKNPASYEKYALSELKNGRLAMIAVGGFIHQMWVYKQGVLYQLAHFKPM 207          
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A7S3A203 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A203_9RHOD)

HSP 1 Score: 204 bits (520), Expect = 1.820e-63
Identity = 100/184 (54.35%), Postives = 128/184 (69.57%), Query Frame = 0
Query:   29 RSAVSMKISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPWG---KSLNPIEAHDFFVKTGGMSQLLLFL-GFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 208
            +  V+M  S AMPFME P  LD  ++ G+ GFDPL L+  F+ K+MQEAEIKH R+ ML  LG+++PE+F  PW    K +  ++AHD+FVKTGG++Q+ LF+ G+  I G  AL+ T+EG RAPG FGFDPLGLGKDP K KK    E+ NGRLAMCA GG  H   + KQG LDQL HF+ +
Sbjct:   24 KGVVTMLQSKAMPFMEAPPALDG-TLPGDNGFDPLGLTNYFDIKWMQEAEIKHGRICMLATLGFLVPELFTLPWAYFPKGILAVDAHDYFVKTGGLAQVNLFISGWEAIIGVAALQATMEGKRAPGDFGFDPLGLGKDPAKMKKNQTVELINGRLAMCAIGGFIHQQWIYKQGILDQLLHFKPM 206          
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A7S1TDA8 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TDA8_9RHOD)

HSP 1 Score: 205 bits (522), Expect = 3.290e-63
Identity = 99/186 (53.23%), Postives = 134/186 (72.04%), Query Frame = 0
Query:   27 VSRSA--VSMKISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFP--WGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 208
            VS+S   V+MK+S +MPFME P  LD  S+ G++GFDPL L++VF+ ++M+E+E+KH R+AML  +G+++ E F  P  +  S+  ++AHD+FVKTGGMSQLLLFL  LE+ G +AL ET++G R PGYFGFDPL   KD    KK+  +E+KNGRLAM A GG  H   + K G +D LTHF+AL
Sbjct:   62 VSKSVRGVTMKLSESMPFMEAPPALDG-SMAGDIGFDPLGLTKVFDIRWMRESELKHGRIAMLACVGFLVQEAFTLPAPYFPSMLAVDAHDYFVKTGGMSQLLLFLSALEVIGTVALAETMQGTREPGYFGFDPLNFSKDEASTKKFAENEVKNGRLAMIAIGGFIHYEWMYKTGIIDGLTHFKAL 246          
BLAST of Ggra9491.t1 vs. uniprot
Match: A8KCP5 (Light harvesting complex protein 5 n=3 Tax=Guillardia theta TaxID=55529 RepID=A8KCP5_GUITH)

HSP 1 Score: 202 bits (514), Expect = 3.570e-62
Identity = 102/200 (51.00%), Postives = 136/200 (68.00%), Query Frame = 0
Query:   24 SPRVSRSAVSM---------KISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGL--GKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPGHL 212
            +P  SR+A+S            S ++PF++QPT LD  S+ G+VGFDPL  S+VF+ K ++EAE+KH R+AML VLG+++ E + FP+   ++PIEAHD  VK+GGMSQ+LL+  FLEIFG IAL +T++G R PG F FDPLGL  GK+    +KY L+EIK+GRLAM AFGG  H   +TKQG  +QL      P  L
Sbjct:   27 APAASRAAISRGPRMAVFEGSFSESVPFLKQPTNLDG-SLPGDVGFDPLGFSEVFDVKVLREAELKHGRIAMLAVLGWLVQESYTFPFFDKVSPIEAHDLLVKSGGMSQILLWTSFLEIFGGIALFQTIQGTRYPGDFSFDPLGLSAGKNEANLEKYQLAEIKHGRLAMIAFGGFAHQYFITKQGVFEQLGTSSPSPASL 225          
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A7S0MBH1 (Hypothetical protein n=4 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MBH1_9CRYP)

HSP 1 Score: 196 bits (497), Expect = 1.250e-59
Identity = 92/189 (48.68%), Postives = 130/189 (68.78%), Query Frame = 0
Query:   26 RVSRSAVSMKI----SPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALPG 210
            R SRSA  +K+    S A+PF+++P+ LD  ++ G+VGFDPL  S VF+ + ++EAE+KH R AML VLG+I+ EV+ FP+   L P++AHD+FV  GG  Q++ ++ F+E+FG +AL ETL+G RAPG F FDPL L KD     +Y L+EIK+ RLAM A GG  H  ++TK   L+QL +FQ +  
Sbjct:   44 RASRSACGLKMQGDFSAAVPFLKRPSNLDG-TLTGDVGFDPLGFSDVFDLRVLREAELKHGRFAMLAVLGFIVQEVYTFPFFPKLAPVDAHDYFVTQGGGQQIIFWISFVELFGVVALFETLQGKRAPGDFSFDPLNLAKDEATLDRYRLAEIKHSRLAMIAIGGFVHQAIITKTPVLEQLANFQPIQS 231          
BLAST of Ggra9491.t1 vs. uniprot
Match: Q9M441 (Light-harvesting protein n=2 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9M441_GALSU)

HSP 1 Score: 197 bits (500), Expect = 3.450e-59
Identity = 93/176 (52.84%), Postives = 125/176 (71.02%), Query Frame = 0
Query:   35 KISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFP--WGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQAL 208
            K S A+PFM  P  LD  ++ G+VGFDPL  + VF+ K+M+EAE+KHCR+AML  LG+++ E++ FP  +   + P+ AHD +VKTGGMSQ+LLF+ F EI    A+ + +EG R PG F FDPLGLGKDP+ F+KY  SE++NGRLAM A GG  H   +TKQG  +QL +F+ L
Sbjct:  126 KWSKALPFMLWPKNLDG-TMAGDVGFDPLGFTNVFDVKWMREAELKHCRIAMLAALGFMVQELWTFPHPYFSKVPPVLAHDVYVKTGGMSQILLFVIFFEIISVFAVSQMMEGKREPGVFHFDPLGLGKDPDTFRKYEWSELRNGRLAMIAVGGFIHQYWVTKQGIFEQLANFKPL 300          
BLAST of Ggra9491.t1 vs. uniprot
Match: A0A5J4YN76 (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YN76_PORPP)

HSP 1 Score: 194 bits (492), Expect = 4.490e-59
Identity = 102/214 (47.66%), Postives = 141/214 (65.89%), Query Frame = 0
Query:    1 MVAFITPVVTGFSTALRGQAVCGSPRVSRSAVSMKISPAMPFMEQPTTLDDDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQFPW--GKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIF-GAIALKETLEG--DRAPGYFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLDQLTHFQALP 209
            M AF++ +    ++  RG AVC  P  ++ ++  K S ++PFME P  LD  S++G+VGFDPL  S   + KF++EAE+KHCR+ ML  LG I+ EV+QFP+  G      +AHD+FVK G ++Q+LLF  F+E+  G   + +T+ G  DRAPGYF FDPLGLGKD  KF++Y LSE+KNGRLAM A GG  H   + K   L+QL+  + LP
Sbjct:    8 MAAFVSSLGLARASVGRG-AVCTKPGSAQLSMMAK-SKSVPFMEAPAALDG-SMVGDVGFDPLGFSNYIDLKFLREAELKHCRICMLAALGIIVQEVYQFPFYSGAPRLATDAHDYFVKFGSLNQILLFASFIELVAGTPGIIQTMRGETDRAPGYFAFDPLGLGKDKAKFERYQLSELKNGRLAMIAVGGFIHQAWMAKVPVLEQLSTGKLLP 218          
The following BLAST results are available for this feature:
BLAST of Ggra9491.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5P94.520e-13179.81Chlorophyll a-b binding protein 6, chloroplastic n... [more]
R7QUA51.490e-11173.21Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0F4D69.390e-6648.64Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A5J4ZAY02.390e-6450.52Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
A0A7S3A2031.820e-6354.35Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S1TDA83.290e-6353.23Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A8KCP53.570e-6251.00Light harvesting complex protein 5 n=3 Tax=Guillar... [more]
A0A7S0MBH11.250e-5948.68Hypothetical protein n=4 Tax=Cryptomonas curvata T... [more]
Q9M4413.450e-5952.84Light-harvesting protein n=2 Tax=Galdieria sulphur... [more]
A0A5J4YN764.490e-5947.66Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 35..212
e-value: 2.9E-45
score: 156.6
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 27..202
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 140..213
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 103..121
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 84..102
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..83
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..139
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 34..211
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 46..190
e-value: 2.4E-38
score: 132.2
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 27..202

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000873_piloncontigtig00000873_pilon:173545..174278 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9491.t1Ggra9491.t1Gracilaria gracilis GNS1m malemRNAtig00000873_pilon 173545..174278 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra9491.t1 ID=Ggra9491.t1|Name=Ggra9491.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MVAFITPVVTGFSTALRGQAVCGSPRVSRSAVSMKISPAMPFMEQPTTLD
DDSIIGNVGFDPLNLSQVFNFKFMQEAEIKHCRVAMLGVLGYIIPEVFQF
PWGKSLNPIEAHDFFVKTGGMSQLLLFLGFLEIFGAIALKETLEGDRAPG
YFGFDPLGLGKDPEKFKKYHLSEIKNGRLAMCAFGGLYHATLLTKQGTLD
QLTHFQALPGHLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln